Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN01G1916 Fragaria x ananassa HOM05D005711 ORTHO05D007125 2.3e-268 928.3 464 100.0
FAN24G0778 Fragaria x ananassa HOM05D005711 ORTHO05D007125 3.1e-185 652.1 385 87.0
FvH4_2g02670 Fragaria vesca HOM05D005711 ORTHO05D007125 5.4e-185 651.4 385 87.0
FAN15G2563 Fragaria x ananassa HOM05D005711 ORTHO05D007125 3.3e-182 642.1 385 86.2
FAN20G1206 Fragaria x ananassa HOM05D005711 ORTHO05D007125 4.7e-181 638.3 385 85.5
RcHm_v2.0_Chr7g0177161 Rosa chinensis HOM05D005711 ORTHO05D007125 5.0e-167 591.7 385 77.9
RcHm_v2.0_Chr6g0247071 Rosa chinensis HOM05D005711 ORTHO05D007125 1.7e-162 576.6 385 76.6
Prupe.8G156400 Prunus persica HOM05D005711 ORTHO05D007125 2.5e-142 509.6 384 67.4
FvH4_7g07942 Fragaria vesca HOM05D005711 ORTHO05D007125 2.4e-140 503.1 282 90.4
MD05G1111300 Malus domestica HOM05D005711 ORTHO05D007125 3.4e-139 499.2 384 65.9
FAN27G3244 Fragaria x ananassa HOM05D005711 ORTHO05D007125 2.0e-131 473.4 248 94.4
TAR633G2044 Trochodendron aralioides HOM05D005711 ORTHO05D007125 2.6e-115 419.9 400 57.0
CiPaw.09G035700 Carya illinoinensis HOM05D005711 ORTHO05D007125 5.9e-115 418.7 389 56.3
CANSAT80G2574 Cannabis sativa HOM05D005711 ORTHO05D007125 2.9e-114 416.4 387 56.8
QL07p021385 Quercus lobata HOM05D005711 ORTHO05D007125 2.9e-114 416.4 389 56.8
GSVIVG01033319001 Vitis vinifera HOM05D005711 ORTHO05D007125 2.5e-113 413.3 393 55.5
Dinv24132 Davidia involucrata HOM05D005711 ORTHO05D007125 7.2e-113 411.8 392 54.8
Thecc.05G160700 Theobroma cacao HOM05D005711 ORTHO05D007125 3.9e-111 406.0 397 55.2
Duzib093G0922 Durio zibethinus HOM05D005711 ORTHO05D007125 6.7e-111 405.2 393 55.7
Cfa016851 Carpinus fangiana HOM05D005711 ORTHO05D007125 1.1e-110 404.4 390 55.6
Haze_19901 Corylus avellana HOM05D005711 ORTHO05D007125 2.5e-110 403.3 389 55.8
Potri.006G054100 Populus trichocarpa HOM05D005711 ORTHO05D007125 1.5e-107 394.0 394 52.8
TWI53G1199 Tripterygium wilfordii HOM05D005711 ORTHO05D007125 1.4e-105 387.5 426 51.9
Lj2C380T2 Lonicera japonica HOM05D005711 ORTHO05D007125 9.4e-105 384.8 391 53.7
COL.COLO4_28164 Corchorus olitorius HOM05D005711 ORTHO05D007125 2.1e-104 383.6 392 53.6
Manes.09G026800 Manihot esculenta HOM05D005711 ORTHO05D007125 4.6e-104 382.5 392 53.3
Gohir.A01G196500 Gossypium hirsutum HOM05D005711 ORTHO05D007125 2.3e-103 380.2 395 52.9
Gorai.002G230200 Gossypium raimondii HOM05D005711 ORTHO05D007125 2.5e-102 376.7 395 52.4
Glyma.19G141900 Glycine max HOM05D005711 ORTHO05D007125 4.3e-102 375.9 387 51.7
Actinidia09354 Actinidia chinensis HOM05D005711 ORTHO05D007125 6.3e-101 372.1 393 50.6
Cpa.g.sc92.19 Carica papaya HOM05D005711 ORTHO05D007125 1.8e-100 370.5 395 51.6
Nn7g36123 Nelumbo nucifera HOM05D005711 ORTHO05D007125 2.6e-99 366.7 421 48.5
Lj1g0025810 Lotus japonicus HOM05D005711 ORTHO05D007125 2.2e-98 363.6 386 50.5
CSS0036262 Camellia sinensis var. sinensis HOM05D005711 ORTHO05D007125 5.0e-98 362.5 394 50.3
Phvul.001G135900 Phaseolus vulgaris HOM05D005711 ORTHO05D007125 3.2e-97 359.8 387 50.1
Ca_08477_v3 Cicer arietinum L. HOM05D005711 ORTHO05D007125 6.1e-96 355.5 386 48.4
VMungo1383G1829 Vigna mungo HOM05D005711 ORTHO05D007125 3.0e-95 353.2 386 49.2
Ciclev10004212m.g Citrus clementina HOM05D005711 ORTHO05D007125 5.1e-95 352.4 392 49.0
Lalb_Chr20g0110821 Lupinus albus HOM05D005711 ORTHO05D007125 6.7e-95 352.1 387 48.8
Sc25g0005260 Simmondsia chinensis HOM05D005711 ORTHO05D007125 2.0e-94 350.5 386 47.2
TPR.G3825 Trifolium pratense HOM05D005711 ORTHO05D007125 4.4e-94 349.4 386 47.4
Aqoxy7G01800 Aquilegia oxysepala HOM05D005711 ORTHO05D007125 5.7e-94 349.0 410 48.0
arahy.Tifrunner.gnm1.ann1.7A57YA Arachis hypogaea HOM05D005711 ORTHO05D007125 2.2e-93 347.1 385 48.3
Medtr7g092130 Medicago truncatula HOM05D005711 ORTHO05D007125 2.2e-93 347.1 412 45.4
Psat3g071760 Pisum sativum HOM05D005711 ORTHO05D007125 4.8e-93 345.9 381 47.5
CsaV3_4G031330 Cucumis sativus L. HOM05D005711 ORTHO05D007125 2.0e-91 340.5 390 49.5
THA.LOC104802271 Tarenaya hassleriana HOM05D005711 ORTHO05D007125 2.0e-91 340.5 394 47.2
AL5G39150 Arabidopsis lyrata HOM05D005711 ORTHO05D007125 7.7e-91 338.6 391 47.3
arahy.Tifrunner.gnm1.ann1.FZG2LY Arachis hypogaea HOM05D005711 ORTHO05D007125 7.7e-91 338.6 384 47.7
AT3G57570 Arabidopsis thaliana HOM05D005711 ORTHO05D007125 1.1e-89 334.7 386 47.4
Sed0005844 Sechium edule HOM05D005711 ORTHO05D007125 1.1e-89 334.7 396 49.0
Cc06_g17000 Coffea canephora HOM05D005711 ORTHO05D007125 1.9e-89 334.0 393 48.6
Migut.J01777 Erythranthe guttata HOM05D005711 ORTHO05D007125 1.9e-89 334.0 401 44.6
A09p50460 Brassica napus HOM05D005711 ORTHO05D007125 4.2e-89 332.8 381 47.0
SGA_v2.0_scaffold69G23097 Striga asiatica HOM05D005711 ORTHO05D007125 2.1e-88 330.5 408 45.3
BraA09t40497Z Brassica rapa HOM05D005711 ORTHO05D007125 3.6e-88 329.7 392 45.9
EL10Ac3g07027 Beta vulgaris HOM05D005711 ORTHO05D007125 1.4e-87 327.8 398 44.7
PGR004G1983 Punica granatum HOM05D005711 ORTHO05D007125 1.8e-87 327.4 386 49.0
MSTRG.6443 Avicennia marina HOM05D005711 ORTHO05D007125 3.0e-87 326.6 377 45.4
PSO782G5466 Papaver somniferum HOM05D005711 ORTHO05D007125 4.0e-87 326.2 397 47.1
AUR62026001 Chenopodium quinoa HOM05D005711 ORTHO05D007125 6.7e-87 325.5 395 44.8
Rhsim03G0016500 Rhododendron simsii HOM05D005711 ORTHO05D007125 1.1e-86 324.7 409 46.5
HanXRQChr13g0390691 Helianthus annuus HOM05D005711 ORTHO05D007125 2.0e-86 323.9 384 46.1
Carub.0005s2441 Capsella rubella HOM05D005711 ORTHO05D007125 5.7e-86 322.4 386 46.1
Eucgr.A02387 Eucalyptus grandis HOM05D005711 ORTHO05D007125 1.3e-85 321.2 391 47.3
ECA248G2859 Erigeron canadensis HOM05D005711 ORTHO05D007125 3.7e-85 319.7 390 45.6
MELO3C009042.2 Cucumis melo HOM05D005711 ORTHO05D007125 6.3e-85 318.9 372 51.3
C08p33160 Brassica napus HOM05D005711 ORTHO05D007125 7.7e-83 312.0 414 43.2
BolC8t50918H Brassica oleracea HOM05D005711 ORTHO05D007125 7.7e-83 312.0 414 43.2
Aa31LG10G12390 Aethionema arabicum HOM05D005711 ORTHO05D007125 1.9e-81 307.4 393 44.8
CDE10G0401 Ceratophyllum demersum HOM05D005711 ORTHO05D007125 2.5e-81 307.0 405 43.5
Rhsim03G0016100 Rhododendron simsii HOM05D005711 ORTHO05D007125 3.2e-81 306.6 391 45.8
Gohir.D01G186800 Gossypium hirsutum HOM05D005711 ORTHO05D007125 4.2e-81 306.2 247 60.7
ClCG04G000840 Citrullus lanatus HOM05D005711 ORTHO05D007125 3.0e-79 300.1 367 48.5
AUR62024408 Chenopodium quinoa HOM05D005711 ORTHO05D007125 9.8e-78 295.0 431 40.1
DCAR_009055 Daucus carota HOM05D005711 ORTHO05D007125 9.8e-78 295.0 393 44.5
Ah.13g076290 Amaranthus hybridus HOM05D005711 ORTHO05D007125 1.8e-76 290.8 402 41.5
ATR0605G192 Amborella trichopoda HOM05D005711 ORTHO05D007125 7.7e-75 285.4 409 39.4
Oeu018003.1 Olea europaea HOM05D005711 ORTHO05D007125 1.6e-72 277.7 396 41.4
Sp5g05020 Schrenkiella parvula HOM05D005711 ORTHO05D007125 1.6e-72 277.7 348 46.0
Thhalv10005777m.g Eutrema salsugineum HOM05D005711 ORTHO05D007125 2.5e-65 253.8 247 53.0
SalBow6G5243 Salvia bowleyana HOM05D005711 ORTHO05D007125 2.1e-64 250.8 332 41.3
Nitab4.5_0002510g0050 Nicotiana tabacum HOM05D005711 ORTHO05D007125 2.0e-62 244.2 394 37.6
Lsat_1_v5_gn_5_162580 Lactuca sativa HOM05D005711 ORTHO05D007125 3.2e-60 236.9 350 40.3
BcaC07g40362 Brassica carinata HOM05D005711 ORTHO05D007125 7.8e-59 232.3 284 44.4
FvH4_7g07941 Fragaria vesca HOM05D005711 ORTHO05D007125 5.4e-52 209.5 106 100.0
CARHR167810 Cardamine hirsuta HOM05D005711 ORTHO05D007125 9.5e-49 198.7 245 46.9
vmacro07878 Vaccinium macrocarpon HOM05D005711 ORTHO05D007125 1.6e-48 198.0 267 44.9
Pp3c13_4080 Physcomitrium patens HOM05D005711 ORTHO05D007125 3.1e-47 193.7 421 31.1
Rhsim05G0135200 Rhododendron simsii HOM05D005711 ORTHO05D007125 3.2e-44 183.7 446 32.7
Solyc03g063700.1 Solanum lycopersicum HOM05D005711 ORTHO05D007125 1.0e-42 178.7 241 41.9
Mapoly0169s0013 Marchantia polymorpha HOM05D005711 ORTHO05D007125 1.7e-42 177.9 247 37.2
Peaxi162Scf00650g00112 Petunia axillaris HOM05D005711 ORTHO05D007125 3.0e-42 177.2 397 32.5
Atru.chr1.1044 Acer truncatum HOM05D005711 ORTHO05D007125 6.8e-39 166.0 136 61.8
Nitab4.5_0005201g0010 Nicotiana tabacum HOM05D005711 ORTHO05D007125 4.6e-35 153.3 214 42.1
Rhsim03G0014800 Rhododendron simsii HOM05D005711 ORTHO05D007125 7.3e-33 146.0 248 37.5
CARHR167800 Cardamine hirsuta HOM05D005711 ORTHO05D007125 2.1e-32 144.4 129 54.3
Rhsim03G0017400 Rhododendron simsii HOM05D005711 ORTHO05D007125 6.2e-32 142.9 241 36.9
PGSC0003DMG402011958 Solanum tuberosum HOM05D005711 ORTHO05D007125 1.5e-30 138.3 207 39.6
Rhsim03G0097300 Rhododendron simsii HOM05D005711 ORTHO05D007125 3.4e-30 137.1 303 33.3
PGSC0003DMG401011958 Solanum tuberosum HOM05D005711 ORTHO05D007125 1.4e-28 131.7 132 48.5
Sabra06G0038400 Salix brachista HOM05D005711 ORTHO05D007125 1.3e-24 118.6 103 61.2
SEGI_00323 Sequoiadendron giganteum HOM05D005711 ORTHO05D007125 1.4e-23 115.2 233 35.2
vmacro07877 Vaccinium macrocarpon HOM05D005711 ORTHO05D007125 5.4e-20 103.2 68 70.6
Thecc.05G160900 Theobroma cacao HOM05D005711 ORTHO05D007125 1.3e-18 98.6 83 62.7
CBR_g41427 Chara braunii HOM05D005711 ORTHO05D007125 1.2e-14 85.5 184 29.9
SMO356G0176 Selaginella moellendorffii HOM05D005711 ORTHO05D007125 2.0e-14 84.7 225 31.1
SEGI_36353 Sequoiadendron giganteum HOM05D005711 ORTHO05D007125 3.4e-14 84.0 74 54.1
vmacro22370 Vaccinium macrocarpon HOM05D005711 ORTHO05D007125 1.1e-12 79.0 72 56.9
arahy.Tifrunner.gnm1.ann1.N4MAIX Arachis hypogaea HOM05D005711 ORTHO05D007125 2.1e-11 74.7 62 56.5
BcaC07g40361 Brassica carinata HOM05D005711 ORTHO05D007125 3.0e-10 70.9 55 61.8
Thecc.05G161000 Theobroma cacao HOM05D005711 ORTHO05D007125 3.1e-07 60.8 43 65.1
SalBow4G0785 Salvia bowleyana HOM05D005711 ORTHO05D007125 7.6e-06 56.2 88 37.5


User provided reference genes

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