Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN01G1889 Fragaria x ananassa HOM05D001997 ORTHO05D004620 0.0e+00 1194.5 647 100.0
FAN06G3325 Fragaria x ananassa HOM05D001997 ORTHO05D004620 0.0e+00 1163.7 647 97.4
FvH4_7g14000 Fragaria vesca HOM05D001997 ORTHO05D004620 0.0e+00 1158.7 647 97.2
FAN10G2611 Fragaria x ananassa HOM05D001997 ORTHO05D004620 0.0e+00 1156.4 647 97.1
FAN10G3464 Fragaria x ananassa HOM05D001997 ORTHO05D004620 0.0e+00 1156.4 647 97.1
FAN03G0113 Fragaria x ananassa HOM05D001997 ORTHO05D004620 0.0e+00 1155.6 647 96.8
FAN10G4317 Fragaria x ananassa HOM05D001997 ORTHO05D004620 0.0e+00 1152.9 647 96.8
FAN06G4213 Fragaria x ananassa HOM05D001997 ORTHO05D004620 0.0e+00 1152.5 647 96.6
RcHm_v2.0_Chr1g0354651 Rosa chinensis HOM05D001997 ORTHO05D004620 0.0e+00 1085.5 647 89.5
MD07G1139400 Malus domestica HOM05D001997 ORTHO05D004620 3.5e-251 871.7 647 73.0
Prupe.2G167200 Prunus persica HOM05D001997 ORTHO05D004620 6.9e-247 857.4 647 73.0
Cfa015772 Carpinus fangiana HOM05D001997 ORTHO05D004620 1.0e-234 817.0 647 67.1
QL10p047463 Quercus lobata HOM05D001997 ORTHO05D004620 2.6e-230 802.4 646 65.0
Haze_00722 Corylus avellana HOM05D001997 ORTHO05D004620 1.0e-226 790.4 637 66.7
Sabra17G0022600 Salix brachista HOM05D001997 ORTHO05D004620 8.5e-221 770.8 647 62.3
Potri.017G035700 Populus trichocarpa HOM05D001997 ORTHO05D004620 2.5e-220 769.2 647 62.4
Potri.007G124700 Populus trichocarpa HOM05D001997 ORTHO05D004620 3.2e-220 768.8 653 61.7
CANSAT21G1219 Cannabis sativa HOM05D001997 ORTHO05D004620 5.5e-220 768.1 648 63.6
Hma1.2p1_0597F.1_g186510 Hydrangea macrophylla HOM05D001997 ORTHO05D004620 6.1e-219 764.6 650 62.3
Manes.04G048600 Manihot esculenta HOM05D001997 ORTHO05D004620 6.7e-218 761.1 649 61.0
Atru.chr3.1570 Acer truncatum HOM05D001997 ORTHO05D004620 1.5e-217 760.0 647 62.0
Atru.chr3.1589 Acer truncatum HOM05D001997 ORTHO05D004620 1.5e-217 760.0 647 62.0
Ciclev10019328m.g Citrus clementina HOM05D001997 ORTHO05D004620 1.1e-212 743.8 647 61.1
Dinv22695 Davidia involucrata HOM05D001997 ORTHO05D004620 1.4e-210 736.9 646 61.1
CiPaw.02G056300 Carya illinoinensis HOM05D001997 ORTHO05D004620 3.3e-209 732.3 636 61.8
Duzib093G0427 Durio zibethinus HOM05D001997 ORTHO05D004620 3.3e-209 732.3 649 61.6
TWI36G0125 Tripterygium wilfordii HOM05D001997 ORTHO05D004620 2.2e-208 729.6 647 60.0
Lj6C60T7 Lonicera japonica HOM05D001997 ORTHO05D004620 1.1e-207 727.2 651 59.8
Rhsim09G0030400 Rhododendron simsii HOM05D001997 ORTHO05D004620 2.4e-207 726.1 651 59.9
Gorai.006G186500 Gossypium raimondii HOM05D001997 ORTHO05D004620 8.0e-203 711.1 649 59.5
Gorai.004G087500 Gossypium raimondii HOM05D001997 ORTHO05D004620 2.0e-201 706.4 648 58.8
Gohir.D08G083300 Gossypium hirsutum HOM05D001997 ORTHO05D004620 1.3e-200 703.7 649 58.7
TAR622G0498 Trochodendron aralioides HOM05D001997 ORTHO05D004620 1.8e-199 699.9 652 58.6
Gohir.A08G074100 Gossypium hirsutum HOM05D001997 ORTHO05D004620 2.4e-199 699.5 648 58.8
TAR636G0474 Trochodendron aralioides HOM05D001997 ORTHO05D004620 1.2e-198 697.2 652 58.6
PGR044G1365 Punica granatum HOM05D001997 ORTHO05D004620 7.7e-198 694.5 648 57.9
Actinidia35961 Actinidia chinensis HOM05D001997 ORTHO05D004620 6.1e-195 684.9 650 57.2
CSS0007184 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D004620 8.0e-195 684.5 616 60.1
Peaxi162Scf00375g00082 Petunia axillaris HOM05D001997 ORTHO05D004620 5.7e-193 678.3 651 58.4
Sc19g0002180 Simmondsia chinensis HOM05D001997 ORTHO05D004620 1.8e-191 673.3 647 56.4
Sopen06g029850 Solanum pennellii HOM05D001997 ORTHO05D004620 1.0e-189 667.5 661 56.4
Nitab4.5_0010690g0010 Nicotiana tabacum HOM05D001997 ORTHO05D004620 2.9e-189 666.0 651 57.1
Glyma.11G094600 Glycine max HOM05D001997 ORTHO05D004620 6.5e-189 664.8 643 57.5
Cc01_g08750 Coffea canephora HOM05D001997 ORTHO05D004620 8.5e-189 664.5 677 55.7
Lsat_1_v5_gn_6_55020 Lactuca sativa HOM05D001997 ORTHO05D004620 1.1e-188 664.1 647 55.6
PGSC0003DMG400026903 Solanum tuberosum HOM05D001997 ORTHO05D004620 7.2e-188 661.4 661 56.1
Thecc.05G002900 Theobroma cacao HOM05D001997 ORTHO05D004620 7.2e-188 661.4 649 55.9
THA.LOC104802304 Tarenaya hassleriana HOM05D001997 ORTHO05D004620 3.6e-187 659.1 649 56.1
MSTRG.17660 Avicennia marina HOM05D001997 ORTHO05D004620 3.7e-184 649.0 666 54.4
Oeu015677.2 Olea europaea HOM05D001997 ORTHO05D004620 3.7e-184 649.0 671 54.8
AT2G43250 Arabidopsis thaliana HOM05D001997 ORTHO05D004620 1.2e-182 644.0 644 55.0
Lj3g0010188 Lotus japonicus HOM05D001997 ORTHO05D004620 1.6e-182 643.7 668 54.3
CARHR138340 Cardamine hirsuta HOM05D001997 ORTHO05D004620 1.0e-181 641.0 647 54.6
Thhalv10001801m.g Eutrema salsugineum HOM05D001997 ORTHO05D004620 6.6e-181 638.3 648 53.9
Phvul.011G023500 Phaseolus vulgaris HOM05D001997 ORTHO05D004620 6.6e-181 638.3 653 55.3
AUR62035000 Chenopodium quinoa HOM05D001997 ORTHO05D004620 1.9e-180 636.7 652 53.2
Sp4g25380 Schrenkiella parvula HOM05D001997 ORTHO05D004620 2.1e-179 633.3 647 54.1
VMungo1127G1251 Vigna mungo HOM05D001997 ORTHO05D004620 2.1e-179 633.3 650 54.5
Ca_26058_v3 Cicer arietinum L. HOM05D001997 ORTHO05D004620 3.6e-179 632.5 666 52.9
MSTRG.12412 Avicennia marina HOM05D001997 ORTHO05D004620 8.0e-179 631.3 659 54.0
HanXRQChr02g0057961 Helianthus annuus HOM05D001997 ORTHO05D004620 1.5e-177 627.1 647 53.8
MBI11_g35030_MAGBIO Magnolia biondii HOM05D001997 ORTHO05D004620 2.0e-177 626.7 648 53.5
Glyma.03G127700 Glycine max HOM05D001997 ORTHO05D004620 9.8e-177 624.4 659 54.2
Psat7g172720 Pisum sativum HOM05D001997 ORTHO05D004620 3.7e-176 622.5 661 52.5
arahy.Tifrunner.gnm1.ann1.JTZ133 Arachis hypogaea HOM05D001997 ORTHO05D004620 6.3e-176 621.7 638 52.7
ECA233G5997 Erigeron canadensis HOM05D001997 ORTHO05D004620 8.3e-176 621.3 644 53.0
Dinv05995 Davidia involucrata HOM05D001997 ORTHO05D004620 2.4e-175 619.8 642 53.4
Ca_30128_v3 Cicer arietinum L. HOM05D001997 ORTHO05D004620 3.1e-175 619.4 654 52.9
TPR.G13756 Trifolium pratense HOM05D001997 ORTHO05D004620 2.0e-174 616.7 664 53.2
AL4G41910 Arabidopsis lyrata HOM05D001997 ORTHO05D004620 1.7e-173 613.6 644 53.3
A04p32530 Brassica napus HOM05D001997 ORTHO05D004620 4.7e-171 605.5 648 53.1
BcaC02g07197 Brassica carinata HOM05D001997 ORTHO05D004620 6.1e-171 605.1 639 53.4
C04p70220 Brassica napus HOM05D001997 ORTHO05D004620 6.1e-171 605.1 647 52.7
BolC4t28526H Brassica oleracea HOM05D001997 ORTHO05D004620 8.0e-171 604.7 639 53.4
BraA04t18717Z Brassica rapa HOM05D001997 ORTHO05D004620 5.2e-170 602.1 649 53.2
HanXRQChr07g0186151 Helianthus annuus HOM05D001997 ORTHO05D004620 1.5e-169 600.5 644 52.2
Ah.05g167000 Amaranthus hybridus HOM05D001997 ORTHO05D004620 3.4e-169 599.4 637 52.3
Aqoxy7G03960 Aquilegia oxysepala HOM05D001997 ORTHO05D004620 7.0e-167 591.7 654 50.5
Sabra17G0022300 Salix brachista HOM05D001997 ORTHO05D004620 9.2e-167 591.3 581 56.1
Medtr4g076620 Medicago truncatula HOM05D001997 ORTHO05D004620 2.7e-166 589.7 661 51.3
SGA_v2.0_scaffold16G07570 Striga asiatica HOM05D001997 ORTHO05D004620 7.8e-166 588.2 660 53.3
AUR62037461 Chenopodium quinoa HOM05D001997 ORTHO05D004620 1.3e-165 587.4 652 51.1
Migut.N02417 Erythranthe guttata HOM05D001997 ORTHO05D004620 6.6e-165 585.1 662 52.0
BcaB06g29293 Brassica carinata HOM05D001997 ORTHO05D004620 6.2e-163 578.6 614 54.9
PSO675G0019 Papaver somniferum HOM05D001997 ORTHO05D004620 4.4e-161 572.4 675 48.4
PSO017G4366 Papaver somniferum HOM05D001997 ORTHO05D004620 2.4e-159 566.6 673 48.0
DCAR_010832 Daucus carota HOM05D001997 ORTHO05D004620 2.1e-158 563.5 603 52.7
arahy.Tifrunner.gnm1.ann1.7X5TTD Arachis hypogaea HOM05D001997 ORTHO05D004620 7.8e-158 561.6 648 50.0
Medtr4g076640 Medicago truncatula HOM05D001997 ORTHO05D004620 1.9e-156 557.0 642 49.5
Nitab4.5_0002368g0100 Nicotiana tabacum HOM05D001997 ORTHO05D004620 4.3e-156 555.8 567 55.9
TPR.G13749 Trifolium pratense HOM05D001997 ORTHO05D004620 1.4e-154 550.8 666 48.2
Carub.0004s2573 Capsella rubella HOM05D001997 ORTHO05D004620 6.8e-154 548.5 646 49.8
Oeu048804.2 Olea europaea HOM05D001997 ORTHO05D004620 1.5e-153 547.4 638 48.9
Lj4g0020139 Lotus japonicus HOM05D001997 ORTHO05D004620 1.2e-150 537.7 639 50.1
CDE08G0116 Ceratophyllum demersum HOM05D001997 ORTHO05D004620 2.7e-150 536.6 641 48.4
unitig_22.g6172 Utricularia gibba HOM05D001997 ORTHO05D004620 6.0e-150 535.4 664 48.9
Glyma.12G021000 Glycine max HOM05D001997 ORTHO05D004620 4.3e-148 529.3 629 50.4
HPP92_007608 Vanilla planifolia HOM05D001997 ORTHO05D004620 1.2e-147 527.7 645 46.7
Gohir.D09G164700 Gossypium hirsutum HOM05D001997 ORTHO05D004620 6.0e-142 508.8 469 59.9
Gohir.A09G169000 Gossypium hirsutum HOM05D001997 ORTHO05D004620 1.9e-140 503.8 469 59.7
ATR0743G280 Amborella trichopoda HOM05D001997 ORTHO05D004620 4.8e-139 499.2 673 45.8
Eucgr.A00056 Eucalyptus grandis HOM05D001997 ORTHO05D004620 6.4e-136 488.8 444 59.7
Os04g0490700 Oryza sativa ssp. japonica HOM05D001997 ORTHO05D004620 1.2e-134 484.6 677 43.0
Zm00001eb425530 Zea mays HOM05D001997 ORTHO05D004620 6.0e-134 482.3 685 43.5
Solyc06g073490.2 Solanum lycopersicum HOM05D001997 ORTHO05D004620 8.7e-133 478.4 441 59.9
Haze_01373 Corylus avellana HOM05D001997 ORTHO05D004620 3.6e-131 473.0 647 42.3
Cfa015264 Carpinus fangiana HOM05D001997 ORTHO05D004620 6.9e-130 468.8 649 42.4
Nn5g27952 Nelumbo nucifera HOM05D001997 ORTHO05D004620 4.5e-129 466.1 513 49.7
MD01G1056400 Malus domestica HOM05D001997 ORTHO05D004620 3.5e-126 456.4 399 60.7
Lalb_Chr01g0001101 Lupinus albus HOM05D001997 ORTHO05D004620 4.8e-123 446.0 430 56.0
SEGI_28245 Sequoiadendron giganteum HOM05D001997 ORTHO05D004620 3.4e-121 439.9 681 40.4
Thhalv10001772m.g Eutrema salsugineum HOM05D001997 ORTHO05D004620 2.1e-115 420.6 640 43.8
C08p23950 Brassica napus HOM05D001997 ORTHO05D004620 2.2e-107 394.0 645 40.9
Cpa.g.sc81.168 Carica papaya HOM05D001997 ORTHO05D004620 1.4e-106 391.3 648 39.2
Glyma.19G130251 Glycine max HOM05D001997 ORTHO05D004620 4.1e-106 389.8 349 60.2
SalBow3G0527 Salvia bowleyana HOM05D001997 ORTHO05D004620 1.6e-102 377.9 361 59.3
BraA05t19355Z Brassica rapa HOM05D001997 ORTHO05D004620 1.1e-98 365.2 632 40.2
A05p03690 Brassica napus HOM05D001997 ORTHO05D004620 3.4e-97 360.1 632 39.9
GSVIVG01013581001 Vitis vinifera HOM05D001997 ORTHO05D004620 3.4e-97 360.1 404 50.7
C04p04300 Brassica napus HOM05D001997 ORTHO05D004620 2.9e-96 357.1 636 40.1
BolC4t22066H Brassica oleracea HOM05D001997 ORTHO05D004620 1.2e-94 351.7 636 39.8
RcHm_v2.0_Chr1g0373181 Rosa chinensis HOM05D001997 ORTHO05D004620 1.2e-94 351.7 625 38.9
BcaC07g39373 Brassica carinata HOM05D001997 ORTHO05D004620 7.9e-94 349.0 624 38.9
BolC8t50019H Brassica oleracea HOM05D001997 ORTHO05D004620 2.3e-93 347.4 645 38.0
FvH4_7g26521 Fragaria vesca HOM05D001997 ORTHO05D004620 7.0e-90 335.9 625 38.6
A06p18770 Brassica napus HOM05D001997 ORTHO05D004620 3.5e-89 333.6 647 37.2
Mapoly0021s0032 Marchantia polymorpha HOM05D001997 ORTHO05D004620 5.3e-82 309.7 672 32.7
FAN06G2538 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.2e-81 308.5 627 37.6
FAN03G0465 Fragaria x ananassa HOM05D001997 ORTHO05D004620 2.9e-80 303.9 630 37.0
FAN10G3679 Fragaria x ananassa HOM05D001997 ORTHO05D004620 3.6e-78 297.0 459 42.3
FAN01G2316 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.1e-66 258.8 459 39.2
BcaNung06617 Brassica carinata HOM05D001997 ORTHO05D004620 7.0e-66 256.1 609 35.5
Pp3c13_12610 Physcomitrium patens HOM05D001997 ORTHO05D004620 4.9e-51 206.8 652 28.1
BraA06t24958Z Brassica rapa HOM05D001997 ORTHO05D004620 1.2e-49 202.2 462 34.0
TPR.G11744 Trifolium pratense HOM05D001997 ORTHO05D004620 1.9e-47 194.9 329 40.1
Actinidia28986 Actinidia chinensis HOM05D001997 ORTHO05D004620 2.0e-44 184.9 314 40.4
GSVIVG01013582001 Vitis vinifera HOM05D001997 ORTHO05D004620 1.3e-43 182.2 186 54.3
BcaB06g29296 Brassica carinata HOM05D001997 ORTHO05D004620 1.0e-40 172.6 202 53.0
BcaC07g39374 Brassica carinata HOM05D001997 ORTHO05D004620 2.2e-35 154.8 153 52.9
Lsat_1_v5_gn_5_125441 Lactuca sativa HOM05D001997 ORTHO05D004620 1.1e-34 152.5 121 68.6
CAN.G46.28 Capsicum annuum HOM05D001997 ORTHO05D004620 1.9e-34 151.8 115 66.1
CAN.G138.1 Capsicum annuum HOM05D001997 ORTHO05D004620 4.1e-34 150.6 134 59.7
SHI06486 Sapria himalayana HOM05D002588 ORTHO05D002979 1.1e-31 142.5 133 61.7
MD01G1056500 Malus domestica HOM05D001997 ORTHO05D004620 1.2e-30 139.0 90 75.6
C04p70240 Brassica napus HOM05D001997 ORTHO05D004620 3.1e-29 134.4 108 64.8
BcaB01g03399 Brassica carinata HOM05D001997 ORTHO05D004620 4.9e-27 127.1 384 29.9
CAN.G1014.21 Capsicum annuum HOM05D001997 ORTHO05D004620 1.9e-26 125.2 94 67.0
CAN.G765.4 Capsicum annuum HOM05D001997 ORTHO05D004620 4.6e-25 120.6 94 63.8
BcaB06g29294 Brassica carinata HOM05D001997 ORTHO05D004620 1.7e-24 118.6 155 47.7
BcaC02g07196 Brassica carinata HOM05D001997 ORTHO05D004620 4.3e-23 114.0 90 64.4
Dinv44213 Davidia involucrata HOM05D001997 ORTHO05D004620 8.1e-22 109.8 66 78.8
BcaB06g29295 Brassica carinata HOM05D001997 ORTHO05D004620 3.1e-21 107.8 90 62.2
BolC4t28528H Brassica oleracea HOM05D001997 ORTHO05D004620 5.3e-21 107.1 111 55.9
AagrBONN_evm.TU.Sc2ySwM_228.3298 Anthoceros agrestis HOM05D001997 ORTHO05D004620 1.2e-20 105.9 181 37.6
SalBow3G4162 Salvia bowleyana HOM05D001997 ORTHO05D004620 2.6e-20 104.8 97 54.6
BolC4t28530H Brassica oleracea HOM05D001997 ORTHO05D004620 1.4e-18 99.0 144 44.4
SalBow3G4229 Salvia bowleyana HOM05D001997 ORTHO05D004620 1.2e-17 95.9 113 48.7
Medtr4g076610 Medicago truncatula HOM05D001997 ORTHO05D004620 8.7e-16 89.7 85 52.9
Actinidia11446 Actinidia chinensis HOM05D001997 ORTHO05D004620 1.1e-15 89.4 196 36.2
SGA_v2.0_scaffold4G02500 Striga asiatica HOM05D001997 ORTHO05D004620 4.3e-15 87.4 70 60.0
SMO356G0473 Selaginella moellendorffii HOM05D001997 ORTHO05D004620 3.1e-13 81.3 217 31.3
C04p70260 Brassica napus HOM05D001997 ORTHO05D004620 5.3e-13 80.5 232 31.0
A04p32560 Brassica napus HOM05D001997 ORTHO05D004620 2.6e-12 78.2 232 30.6
BraA04t18720Z Brassica rapa HOM05D001997 ORTHO05D004620 2.6e-12 78.2 232 30.6
TPR.G290 Trifolium pratense HOM05D001997 ORTHO05D004620 2.4e-10 71.6 51 66.7
BcaC05g28816 Brassica carinata HOM05D001997 ORTHO05D004620 9.3e-10 69.7 80 50.0
FAN10G4060 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.2e-09 69.3 279 25.8
BcaNung06616 Brassica carinata HOM05D001997 ORTHO05D004620 1.6e-09 68.9 96 41.7
C03p28740 Brassica napus HOM05D001997 ORTHO05D004620 3.0e-08 64.7 60 53.3
Hund00190 Selenicereus undatus HOM05D001997 ORTHO05D004620 6.7e-08 63.5 121 38.0
BcaC01g05247 Brassica carinata HOM05D001997 ORTHO05D004620 2.5e-07 61.6 68 50.0


User provided reference genes

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