Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN01G1792 Fragaria x ananassa HOM05D007286 ORTHO05D008955 1.2e-189 666.4 349 100.0
FAN03G2081 Fragaria x ananassa HOM05D007286 ORTHO05D008955 4.5e-184 647.9 349 98.0
FvH4_7g05350 Fragaria vesca HOM05D007286 ORTHO05D008955 1.4e-153 546.6 332 89.2
FAN10G0279 Fragaria x ananassa HOM05D000139 ORTHO05D008955 1.2e-136 490.3 263 98.5
FAN06G0358 Fragaria x ananassa HOM05D007286 ORTHO05D008955 6.5e-135 484.6 279 92.1
FAN03G1022 Fragaria x ananassa HOM05D007286 ORTHO05D008955 3.6e-133 478.8 279 91.0
FvH4_7g04960 Fragaria vesca HOM05D007286 ORTHO05D008955 6.1e-133 478.0 279 91.0
FAN10G3167 Fragaria x ananassa HOM05D007286 ORTHO05D008955 8.0e-133 477.6 279 90.7
RcHm_v2.0_Chr1g0331161 Rosa chinensis HOM05D007286 ORTHO05D008955 4.4e-115 418.7 275 82.5
Prupe.2G060300 Prunus persica HOM05D007286 ORTHO05D008955 2.9e-74 283.1 275 64.7
MD02G1265200 Malus domestica HOM05D007286 ORTHO05D008955 8.4e-74 281.6 278 62.9
FvH4_c21g00040 Fragaria vesca HOM05D000564 ORTHO05D008955 3.5e-64 249.6 281 56.6
CANSAT56G4194 Cannabis sativa HOM05D007286 ORTHO05D008955 8.2e-53 211.8 284 51.4
CANSAT56G1680 Cannabis sativa HOM05D007286 ORTHO05D008955 2.4e-52 210.3 284 51.4
Ciclev10000662m.g Citrus clementina HOM05D007286 ORTHO05D008955 1.3e-47 194.5 284 51.1
QL04p050581 Quercus lobata HOM05D007286 ORTHO05D008955 1.7e-45 187.6 292 48.6
TWI38G1128 Tripterygium wilfordii HOM05D007286 ORTHO05D008955 1.5e-43 181.0 282 47.9
GSVIVG01027344001 Vitis vinifera HOM05D007286 ORTHO05D008955 5.9e-43 179.1 286 45.1
Cfa010442 Carpinus fangiana HOM05D007286 ORTHO05D008955 5.0e-42 176.0 283 47.3
Nn7g37274 Nelumbo nucifera HOM05D007286 ORTHO05D008955 5.0e-42 176.0 347 41.8
TAR555G0002 Trochodendron aralioides HOM05D007286 ORTHO05D008955 1.4e-41 174.5 303 44.9
PGR142G0126 Punica granatum HOM05D007286 ORTHO05D008955 2.1e-40 170.6 288 46.5
Haze_03401 Corylus avellana HOM05D007286 ORTHO05D008955 7.9e-40 168.7 306 45.1
arahy.Tifrunner.gnm1.ann1.5NH7JH Arachis hypogaea HOM05D007286 ORTHO05D008955 3.9e-39 166.4 301 41.5
arahy.Tifrunner.gnm1.ann1.VD1ICN Arachis hypogaea HOM05D007286 ORTHO05D008955 3.9e-39 166.4 301 42.5
Lalb_Chr19g0132561 Lupinus albus HOM05D007286 ORTHO05D008955 1.5e-38 164.5 301 42.2
CSS0007228 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 2.0e-38 164.1 287 44.3
CSS0046865 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D008955 2.0e-38 164.1 287 44.3
Hma1.2p1_0233F.1_g097980 Hydrangea macrophylla HOM05D007286 ORTHO05D008955 9.7e-38 161.8 296 43.2
Glyma.15G221400 Glycine max HOM05D007286 ORTHO05D008955 2.8e-37 160.2 292 41.8
Eucgr.G02637 Eucalyptus grandis HOM05D007286 ORTHO05D008955 3.7e-37 159.8 295 44.1
Rhsim07G0072400 Rhododendron simsii HOM05D007286 ORTHO05D008955 2.4e-36 157.1 291 41.9
Manes.10G063001 Manihot esculenta HOM05D000188 ORTHO05D000362 3.1e-36 156.8 280 46.1
Medtr8g044120 Medicago truncatula HOM05D007286 ORTHO05D008955 1.5e-35 154.5 279 42.7
CiPaw.13G047300 Carya illinoinensis HOM05D007286 ORTHO05D008955 2.0e-35 154.1 291 43.6
Psat4g141960 Pisum sativum HOM05D007286 ORTHO05D008955 3.4e-35 153.3 276 42.0
Potri.010G247100 Populus trichocarpa HOM05D007286 ORTHO05D008955 7.7e-35 152.1 285 43.2
Glyma.08G227900 Glycine max HOM05D007286 ORTHO05D008955 1.9e-33 147.5 288 41.7
Sabra10G0192500 Salix brachista HOM05D007286 ORTHO05D008955 1.2e-32 144.8 287 40.8
vmacro23447 Vaccinium macrocarpon HOM05D007286 ORTHO05D008955 2.7e-32 143.7 319 39.5
MBI19_g06405_MAGBIO Magnolia biondii HOM05D007286 ORTHO05D008955 3.6e-32 143.3 347 36.6
vmacro13789 Vaccinium macrocarpon HOM05D007286 ORTHO05D008955 8.0e-32 142.1 319 39.2
Sabra08G0007300 Salix brachista HOM05D007286 ORTHO05D008955 1.0e-31 141.7 299 40.5
Phvul.011G187500 Phaseolus vulgaris HOM05D007286 ORTHO05D008955 2.3e-31 140.6 280 38.2
Lsat_1_v5_gn_5_41960 Lactuca sativa HOM05D007286 ORTHO05D008955 3.0e-31 140.2 292 42.8
Potri.008G012000 Populus trichocarpa HOM05D007286 ORTHO05D008955 3.0e-31 140.2 290 40.0
Lj3g0009162 Lotus japonicus HOM05D007286 ORTHO05D008955 3.9e-31 139.8 276 41.3
Ca_12172_v3 Cicer arietinum L. HOM05D007286 ORTHO05D008955 1.3e-29 134.8 316 37.0
COL.COLO4_28923 Corchorus olitorius HOM05D007286 ORTHO05D008955 1.3e-29 134.8 296 40.5
PGSC0003DMG401027501 Solanum tuberosum HOM05D007286 ORTHO05D008955 2.2e-29 134.0 278 40.3
Solyc01g096890.4 Solanum lycopersicum HOM05D007286 ORTHO05D008955 3.7e-29 133.3 274 40.9
Sopen01g040600 Solanum pennellii HOM05D007286 ORTHO05D008955 1.1e-28 131.7 274 40.5
ECA246G2791 Erigeron canadensis HOM05D000076 ORTHO05D002730 1.4e-28 131.3 279 41.6
Atru.chr12.1143 Acer truncatum HOM05D007286 ORTHO05D008955 3.1e-28 130.2 265 39.6
Dinv20486 Davidia involucrata HOM05D007286 ORTHO05D008955 5.3e-28 129.4 125 59.2
Aqoxy1G00088 Aquilegia oxysepala HOM05D007286 ORTHO05D008955 9.1e-28 128.6 295 38.6
FAN07G2858 Fragaria x ananassa HOM05D006537 ORTHO05D008186 5.9e-27 125.9 82 84.1
CAN.G134.51 Capsicum annuum HOM05D007286 ORTHO05D008955 2.2e-26 124.0 270 41.5
MELO3C012308.2 Cucumis melo HOM05D007286 ORTHO05D008955 2.2e-26 124.0 319 37.0
Sed0010854 Sechium edule HOM05D007286 ORTHO05D008955 6.5e-26 122.5 308 35.1
Nitab4.5_0005056g0090 Nicotiana tabacum HOM05D007286 ORTHO05D008955 1.1e-25 121.7 295 39.0
Cfa000528 Carpinus fangiana HOM05D007286 ORTHO05D008955 1.5e-25 121.3 247 42.1
ClCG05G022150 Citrullus lanatus HOM05D007286 ORTHO05D008955 1.5e-25 121.3 319 37.6
TPR.G36317 Trifolium pratense HOM05D007286 ORTHO05D008955 2.1e-24 117.5 158 47.5
Nitab4.5_0001611g0060 Nicotiana tabacum HOM05D007286 ORTHO05D008955 4.7e-24 116.3 293 38.2
Duzib128G1558 Durio zibethinus HOM05D000138 ORTHO05D008955 5.2e-23 112.8 291 37.8
Peaxi162Scf00647g00320 Petunia axillaris HOM05D007286 ORTHO05D008955 5.2e-23 112.8 286 38.5
Actinidia12136 Actinidia chinensis HOM05D007286 ORTHO05D008955 6.7e-23 112.5 300 36.7
CsaV3_5G034980 Cucumis sativus L. HOM05D007286 ORTHO05D008955 8.8e-23 112.1 319 35.7
AUR62041274 Chenopodium quinoa HOM05D007286 ORTHO05D008955 1.5e-22 111.3 361 32.7
HanXRQChr07g0192711 Helianthus annuus HOM05D007286 ORTHO05D008955 2.0e-22 110.9 333 34.8
DCAR_025313 Daucus carota HOM05D007286 ORTHO05D008955 3.3e-22 110.2 327 33.3
VMungo1127G0495 Vigna mungo HOM05D007286 ORTHO05D008955 7.5e-22 109.0 242 38.8
AUR62034104 Chenopodium quinoa HOM05D007286 ORTHO05D008955 1.7e-21 107.8 300 35.3
ATR0307G001 Amborella trichopoda HOM05D007286 ORTHO05D008955 3.1e-20 103.6 302 34.4
Sc09g0004920 Simmondsia chinensis HOM05D007286 ORTHO05D008955 4.1e-20 103.2 282 36.2
PSO339G4644 Papaver somniferum HOM05D007286 ORTHO05D008955 2.3e-15 87.4 250 37.2
Thecc.10G130100 Theobroma cacao HOM05D007286 ORTHO05D008955 4.0e-15 86.7 288 34.0
Cc07_g21330 Coffea canephora HOM05D007286 ORTHO05D008955 8.8e-15 85.5 303 34.0
Gorai.009G301600 Gossypium raimondii HOM05D007286 ORTHO05D008955 4.8e-13 79.7 302 32.1
Gohir.A05G285500 Gossypium hirsutum HOM05D007286 ORTHO05D008955 8.3e-13 79.0 230 34.8
Gohir.D05G286600 Gossypium hirsutum HOM05D007286 ORTHO05D008955 1.1e-12 78.6 302 32.1
Dinv30991 Davidia involucrata HOM05D007286 ORTHO05D008955 4.1e-12 76.6 79 58.2
Dinv31112 Davidia involucrata HOM05D007286 ORTHO05D008955 4.1e-12 76.6 79 58.2
Hund06829 Selenicereus undatus HOM05D007286 ORTHO05D008955 4.5e-11 73.2 315 30.2
HPP92_026688 Vanilla planifolia HOM05D007286 ORTHO05D008955 2.8e-08 63.9 282 30.9
Migut.B01162 Erythranthe guttata HOM05D007286 ORTHO05D008955 6.1e-08 62.8 321 26.8
SEGI_40207 Sequoiadendron giganteum HOM05D005518 ORTHO05D001269 1.8e-07 61.2 252 32.9
EL10Ac4g08793 Beta vulgaris HOM05D007286 ORTHO05D008955 3.0e-07 60.5 250 31.2
HPP92_018000 Vanilla planifolia HOM05D007286 ORTHO05D008955 4.0e-07 60.1 280 32.9
Cpa.g.sc54.34 Carica papaya HOM05D007286 ORTHO05D008955 6.8e-07 59.3 46 67.4
MSTRG.20479 Avicennia marina HOM05D007286 ORTHO05D008955 2.0e-06 57.8 288 30.2
CSS0031701 Camellia sinensis var. sinensis HOM05D005518 ORTHO05D001269 5.7e-06 56.2 238 30.3


User provided reference genes

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