Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN01G1631 Fragaria x ananassa HOM05D006344 ORTHO05D007744 2.2e-282 974.9 479 100.0
FvH4_7g10380 Fragaria vesca HOM05D006344 ORTHO05D007744 7.0e-273 943.3 479 97.1
FAN06G2435 Fragaria x ananassa HOM05D006344 ORTHO05D007744 7.0e-273 943.3 479 97.1
FAN10G0415 Fragaria x ananassa HOM05D006344 ORTHO05D007744 2.1e-272 941.8 479 97.1
FAN10G1159 Fragaria x ananassa HOM05D006344 ORTHO05D007744 1.7e-271 938.7 479 96.7
FAN03G0097 Fragaria x ananassa HOM05D006344 ORTHO05D007744 1.7e-266 922.2 528 88.4
FAN06G3766 Fragaria x ananassa HOM05D006344 ORTHO05D007744 4.1e-265 917.5 479 95.0
RcHm_v2.0_Chr1g0348081 Rosa chinensis HOM05D006344 ORTHO05D007744 5.1e-255 884.0 481 90.2
MD07G1109900 Malus domestica HOM05D006344 ORTHO05D007744 1.7e-218 762.7 498 76.3
Prupe.2G133500 Prunus persica HOM05D006344 ORTHO05D007744 1.4e-212 743.0 506 74.1
CANSAT25G2006 Cannabis sativa HOM05D006344 ORTHO05D007744 2.7e-184 649.0 500 65.4
QL04p029920 Quercus lobata HOM05D006344 ORTHO05D007744 2.7e-184 649.0 496 67.3
VMungo0331G0733 Vigna mungo HOM05D006344 ORTHO05D007744 1.1e-180 637.1 498 66.1
Cfa011061 Carpinus fangiana HOM05D006344 ORTHO05D007744 9.1e-180 634.0 511 65.4
Haze_02860 Corylus avellana HOM05D006344 ORTHO05D007744 1.6e-179 633.3 513 64.7
Potri.002G138600 Populus trichocarpa HOM05D006344 ORTHO05D007744 2.0e-179 632.9 511 63.8
Phvul.010G046700 Phaseolus vulgaris HOM05D006344 ORTHO05D007744 2.5e-177 625.9 494 65.6
CSS0047635 Camellia sinensis var. sinensis HOM05D006344 ORTHO05D007744 4.7e-176 621.7 482 66.6
Lj3g0017960 Lotus japonicus HOM05D006344 ORTHO05D007744 2.3e-175 619.4 487 65.9
Manes.05G055800 Manihot esculenta HOM05D006344 ORTHO05D007744 2.3e-175 619.4 506 63.0
CSS0005629 Camellia sinensis var. sinensis HOM05D006344 ORTHO05D007744 3.0e-175 619.0 459 68.0
Glyma.12G152700 Glycine max HOM05D006344 ORTHO05D007744 2.2e-173 612.8 487 65.5
Eucgr.D01222 Eucalyptus grandis HOM05D006344 ORTHO05D007744 2.4e-172 609.4 436 68.8
Sabra02G0107400 Salix brachista HOM05D006344 ORTHO05D007744 2.4e-172 609.4 532 60.3
arahy.Tifrunner.gnm1.ann1.6KIV37 Arachis hypogaea HOM05D006344 ORTHO05D007744 5.9e-171 604.7 488 64.5
Glyma.06G240000 Glycine max HOM05D006344 ORTHO05D007744 5.9e-171 604.7 493 64.5
arahy.Tifrunner.gnm1.ann1.7K9T15 Arachis hypogaea HOM05D006344 ORTHO05D007744 1.3e-170 603.6 507 62.7
Duzib133G0621 Durio zibethinus HOM05D006344 ORTHO05D007744 1.3e-170 603.6 488 63.7
Thecc.01G396400 Theobroma cacao HOM05D006344 ORTHO05D007744 1.9e-169 599.7 484 65.1
Lalb_Chr12g0210531 Lupinus albus HOM05D006344 ORTHO05D007744 3.6e-168 595.5 484 64.0
EL10Ac1g00751 Beta vulgaris HOM05D006344 ORTHO05D007744 8.0e-168 594.3 455 66.4
Oeu011251.1 Olea europaea HOM05D006344 ORTHO05D007744 1.0e-167 594.0 453 65.8
vmacro13505 Vaccinium macrocarpon HOM05D006344 ORTHO05D007744 1.0e-167 594.0 495 63.2
Cc02_g25170 Coffea canephora HOM05D006344 ORTHO05D007744 3.1e-167 592.4 512 60.5
Duzib138G0679 Durio zibethinus HOM05D006344 ORTHO05D007744 3.1e-167 592.4 528 61.0
ECA234G3853 Erigeron canadensis HOM05D006344 ORTHO05D007744 3.1e-167 592.4 467 66.0
THA.LOC104802498 Tarenaya hassleriana HOM05D006344 ORTHO05D007744 3.1e-167 592.4 492 60.8
MELO3C005945.2 Cucumis melo HOM05D006344 ORTHO05D007744 8.9e-167 590.9 501 61.5
Migut.B01523 Erythranthe guttata HOM05D006344 ORTHO05D007744 8.9e-167 590.9 496 63.3
Nn1g00813 Nelumbo nucifera HOM05D006344 ORTHO05D007744 1.5e-166 590.1 461 66.4
GSVIVG01018294001 Vitis vinifera HOM05D006344 ORTHO05D007744 1.5e-166 590.1 367 76.6
MSTRG.20684 Avicennia marina HOM05D006344 ORTHO05D007744 4.4e-166 588.6 472 63.6
TPR.G32142 Trifolium pratense HOM05D006344 ORTHO05D007744 9.8e-166 587.4 500 61.8
Ca_14805_v3 Cicer arietinum L. HOM05D006344 ORTHO05D007744 1.3e-165 587.0 495 62.0
Gohir.A12G097600 Gossypium hirsutum HOM05D006344 ORTHO05D007744 1.3e-165 587.0 507 61.9
SGA_v2.0_scaffold52G19234 Striga asiatica HOM05D006344 ORTHO05D007744 2.2e-165 586.3 448 65.2
Medtr8g007155 Medicago truncatula HOM05D006344 ORTHO05D007744 2.9e-165 585.9 506 62.3
Gohir.D12G100600 Gossypium hirsutum HOM05D006344 ORTHO05D007744 3.7e-165 585.5 509 62.1
Ciclev10019814m.g Citrus clementina HOM05D006344 ORTHO05D007744 4.9e-165 585.1 464 64.0
TWI23G1150 Tripterygium wilfordii HOM05D006344 ORTHO05D007744 8.3e-165 584.3 473 63.2
Thhalv10001417m.g Eutrema salsugineum HOM05D006344 ORTHO05D007744 1.1e-164 583.9 445 66.3
Sp4g26830 Schrenkiella parvula HOM05D006344 ORTHO05D007744 5.4e-164 581.6 479 63.7
Sopen10g011810 Solanum pennellii HOM05D006344 ORTHO05D007744 1.2e-163 580.5 478 61.7
Sc26g0001660 Simmondsia chinensis HOM05D006344 ORTHO05D007744 2.0e-163 579.7 423 67.8
BcaB02g08857 Brassica carinata HOM05D006344 ORTHO05D007744 4.6e-163 578.6 424 67.5
A05p04940 Brassica napus HOM05D006344 ORTHO05D007744 6.0e-163 578.2 483 62.5
Aqoxy3G02683 Aquilegia oxysepala HOM05D006344 ORTHO05D007744 7.8e-163 577.8 509 61.1
HanXRQChr17g0562521 Helianthus annuus HOM05D006344 ORTHO05D007744 7.8e-163 577.8 508 60.0
CiPaw.14G019800 Carya illinoinensis HOM05D006344 ORTHO05D007744 1.7e-162 576.6 485 63.3
Gorai.008G109500 Gossypium raimondii HOM05D006344 ORTHO05D007744 1.7e-162 576.6 505 62.4
SalBow8G3479 Salvia bowleyana HOM05D006344 ORTHO05D007744 2.3e-162 576.2 463 63.7
Dinv44052 Davidia involucrata HOM05D006344 ORTHO05D007744 5.0e-162 575.1 386 72.5
Lsat_1_v5_gn_4_39300 Lactuca sativa HOM05D006344 ORTHO05D007744 5.0e-162 575.1 435 66.0
Psat4g223640 Pisum sativum HOM05D006344 ORTHO05D007744 8.6e-162 574.3 478 62.6
PSO782G2130 Papaver somniferum HOM05D006344 ORTHO05D007744 1.1e-161 573.9 452 64.4
CARHR139980 Cardamine hirsuta HOM05D006344 ORTHO05D007744 1.6e-160 570.1 429 66.7
BraA05t19467Z Brassica rapa HOM05D006344 ORTHO05D007744 2.1e-160 569.7 483 61.7
AUR62013752 Chenopodium quinoa HOM05D006344 ORTHO05D007744 3.6e-160 568.9 480 61.0
AUR62023399 Chenopodium quinoa HOM05D006344 ORTHO05D007744 4.7e-160 568.5 429 64.8
C04p05760 Brassica napus HOM05D006344 ORTHO05D007744 8.1e-160 567.8 433 65.4
Rhsim07G0037100 Rhododendron simsii HOM05D006344 ORTHO05D007744 8.9e-159 564.3 503 60.0
AL4G43840 Arabidopsis lyrata HOM05D006344 ORTHO05D007744 1.2e-158 563.9 434 66.1
BcaC02g12272 Brassica carinata HOM05D006344 ORTHO05D007744 2.6e-158 562.8 433 64.0
BolC4t22205H Brassica oleracea HOM05D006344 ORTHO05D007744 2.6e-158 562.8 433 64.0
Hund17097 Selenicereus undatus HOM05D006344 ORTHO05D007744 3.4e-158 562.4 462 61.9
AT2G44760 Arabidopsis thaliana HOM05D006344 ORTHO05D007744 4.9e-157 558.5 427 65.1
unitig_0.g1343 Utricularia gibba HOM05D006344 ORTHO05D007744 4.1e-156 555.4 481 60.5
TAR375G1150 Trochodendron aralioides HOM05D006344 ORTHO05D007744 5.4e-156 555.1 515 58.8
Nitab4.5_0000228g0070 Nicotiana tabacum HOM05D006344 ORTHO05D007744 1.3e-154 550.4 543 56.2
Aa31LG1G26310 Aethionema arabicum HOM05D006344 ORTHO05D007744 3.9e-154 548.9 478 59.0
ATR0665G564 Amborella trichopoda HOM05D006344 ORTHO05D007744 5.1e-154 548.5 486 59.1
Carub.0004s2733 Capsella rubella HOM05D006344 ORTHO05D007744 1.2e-152 543.9 432 63.9
COL.COLO4_12394 Corchorus olitorius HOM05D006344 ORTHO05D007744 2.8e-152 542.7 360 72.2
ClCG05G000130 Citrullus lanatus HOM05D006344 ORTHO05D007744 1.3e-149 533.9 487 58.1
Zm00001eb427880 Zea mays HOM05D006344 ORTHO05D007744 3.2e-148 529.3 450 59.3
DCAR_025059 Daucus carota HOM05D006344 ORTHO05D007744 6.0e-147 525.0 446 60.1
CsaV3_3G007240 Cucumis sativus L. HOM05D006344 ORTHO05D007744 1.5e-145 520.4 692 44.8
Sed0012570 Sechium edule HOM05D006344 ORTHO05D007744 1.5e-145 520.4 428 61.9
Os04g0545200 Oryza sativa ssp. japonica HOM05D006344 ORTHO05D007744 2.1e-144 516.5 455 57.4
HPP92_012970 Vanilla planifolia HOM05D006344 ORTHO05D007744 8.1e-144 514.6 449 59.0
COL.COLO4_10415 Corchorus olitorius HOM05D006344 ORTHO05D007744 7.6e-142 508.1 432 61.3
PGR004G1920 Punica granatum HOM05D006344 ORTHO05D007744 6.6e-138 495.0 494 55.7
Actinidia18353 Actinidia chinensis HOM05D006344 ORTHO05D007744 2.8e-136 489.6 421 62.0
CDE06G1994 Ceratophyllum demersum HOM05D006344 ORTHO05D007744 1.7e-133 480.3 422 57.8
Cpa.g.sc22.25 Carica papaya HOM05D006344 ORTHO05D007744 4.9e-133 478.8 386 63.0
Lj9C555G1 Lonicera japonica HOM05D006344 ORTHO05D007744 1.3e-114 417.5 259 75.7
Nitab4.5_0009461g0020 Nicotiana tabacum HOM05D006344 ORTHO05D007744 2.4e-111 406.8 335 60.3
Atru.chr5.116 Acer truncatum HOM05D006344 ORTHO05D007744 2.4e-95 353.6 242 71.5
Peaxi162Scf00103g00911 Petunia axillaris HOM05D006344 ORTHO05D007744 7.2e-84 315.5 195 75.4
Peaxi162Scf00103g00912 Petunia axillaris HOM05D006344 ORTHO05D007744 5.9e-78 295.8 314 53.2
Solyc10g037890.3 Solanum lycopersicum HOM05D006344 ORTHO05D007744 6.1e-75 285.8 184 73.9
PGSC0003DMG400026373 Solanum tuberosum HOM05D006344 ORTHO05D007744 1.7e-72 277.7 309 51.5
Solyc10g037900.1 Solanum lycopersicum HOM05D006344 ORTHO05D007744 3.1e-71 273.5 283 53.0
SEGI_37248 Sequoiadendron giganteum HOM05D006344 ORTHO05D007744 1.3e-69 268.1 226 55.8
Pp3c5_3810 Physcomitrium patens HOM05D006344 ORTHO05D007744 9.4e-68 261.9 584 32.2
CAN.G768.2 Capsicum annuum HOM05D006344 ORTHO05D007744 8.0e-67 258.8 310 49.7
PGSC0003DMG400003447 Solanum tuberosum HOM05D006344 ORTHO05D007744 6.3e-64 249.2 164 71.3
AagrBONN_evm.TU.Sc2ySwM_117.1538 Anthoceros agrestis HOM05D006344 ORTHO05D007744 1.5e-52 211.5 562 27.0
SMO340G0133 Selaginella moellendorffii HOM05D002542 ORTHO05D007744 1.9e-52 211.1 450 30.4
Mapoly0089s0048 Marchantia polymorpha HOM05D006344 ORTHO05D007744 5.6e-52 209.5 598 28.8
Atru.chr5.115 Acer truncatum HOM05D006344 ORTHO05D007744 6.8e-50 202.6 260 48.8
Lj9A555T32 Lonicera japonica HOM05D006344 ORTHO05D007744 5.4e-39 166.4 124 70.2
SMO356G0573 Selaginella moellendorffii HOM05D002542 ORTHO05D005078 1.0e-37 162.2 364 29.9
SEGI_14599 Sequoiadendron giganteum HOM05D006344 ORTHO05D007744 7.6e-33 146.0 152 51.3
HanXRQChr09g0257941 Helianthus annuus HOM05D006344 ORTHO05D007744 8.1e-27 125.9 108 59.3
SEGI_30390 Sequoiadendron giganteum HOM05D006344 ORTHO05D007744 8.4e-24 115.9 89 60.7
Actinidia26517 Actinidia chinensis HOM05D006344 ORTHO05D007744 3.5e-22 110.5 61 77.0
CDE06G0422 Ceratophyllum demersum HOM05D006344 ORTHO05D007744 7.6e-17 92.8 58 67.2
Peaxi162Scf00562g00069 Petunia axillaris HOM05D006344 ORTHO05D007744 5.1e-13 80.1 139 36.0
CBR_g48168 Chara braunii HOM05D006344 ORTHO05D007744 6.7e-13 79.7 156 34.0
Peaxi162Scf00562g00611 Petunia axillaris HOM05D006344 ORTHO05D007744 9.6e-12 75.9 86 55.8
BcaB08g35012 Brassica carinata HOM05D006344 ORTHO05D007744 4.0e-10 70.5 101 40.6
CBR_g48169 Chara braunii HOM05D006344 ORTHO05D007744 2.6e-09 67.8 79 41.8
COL.COLO4_10413 Corchorus olitorius HOM05D006344 ORTHO05D007744 9.9e-09 65.9 63 55.6
HanXRQChr01g0015371 Helianthus annuus HOM05D000263 ORTHO05D000213 8.4e-08 62.8 42 66.7
Lsat_1_v5_gn_7_20540 Lactuca sativa HOM05D003720 ORTHO05D007744 1.2e-06 58.9 30 86.7


User provided reference genes

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