Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN01G1544 Fragaria x ananassa HOM05D006954 ORTHO05D008729 0.0e+00 1130.2 652 100.0
FAN10G2562 Fragaria x ananassa HOM05D006954 ORTHO05D008729 3.6e-296 1021.1 675 87.4
FAN03G1627 Fragaria x ananassa HOM05D006954 ORTHO05D008729 2.4e-292 1008.4 662 86.3
FAN06G0609 Fragaria x ananassa HOM05D006954 ORTHO05D008729 3.4e-286 988.0 655 84.9
FAN10G3525 Fragaria x ananassa HOM05D006954 ORTHO05D008729 3.9e-282 974.5 679 83.1
FAN06G1022 Fragaria x ananassa HOM05D006954 ORTHO05D008729 4.3e-281 971.1 655 83.8
RcHm_v2.0_Chr1g0349021 Rosa chinensis HOM05D006954 ORTHO05D008729 6.3e-224 781.2 592 76.7
Prupe.2G137000 Prunus persica HOM05D006954 ORTHO05D008729 1.6e-166 590.5 640 57.5
MD02G1210900 Malus domestica HOM05D006954 ORTHO05D008729 3.1e-162 576.2 607 57.2
MD07G1114400 Malus domestica HOM05D006954 ORTHO05D008729 1.2e-161 574.3 611 56.8
Cfa011147 Carpinus fangiana HOM05D001088 ORTHO05D002099 9.1e-114 415.2 556 52.3
CiPaw.14G025200 Carya illinoinensis HOM05D006954 ORTHO05D008729 5.5e-111 406.0 491 53.0
Haze_02712 Corylus avellana HOM05D006954 ORTHO05D008729 2.1e-110 404.1 476 55.3
QL04p036098 Quercus lobata HOM05D006954 ORTHO05D008729 3.8e-104 383.3 496 51.4
QL04p036667 Quercus lobata HOM05D006954 ORTHO05D008729 2.3e-101 374.0 497 50.3
QL04p036448 Quercus lobata HOM05D006954 ORTHO05D008729 4.0e-101 373.2 497 50.5
TWI59G0609 Tripterygium wilfordii HOM05D006954 ORTHO05D008729 2.2e-99 367.5 622 43.7
Dinv43668 Davidia involucrata HOM05D006954 ORTHO05D008729 2.9e-88 330.5 608 42.8
Thecc.01G384400 Theobroma cacao HOM05D006954 ORTHO05D008729 4.3e-87 326.6 599 42.1
Duzib133G0753 Durio zibethinus HOM05D006954 ORTHO05D008729 7.3e-87 325.9 601 41.1
Atru.chr5.233 Acer truncatum HOM05D006954 ORTHO05D008729 7.8e-81 305.8 564 40.1
Gohir.D07G153000 Gossypium hirsutum HOM05D006954 ORTHO05D008729 8.9e-77 292.4 546 43.6
Gohir.A07G147000 Gossypium hirsutum HOM05D006954 ORTHO05D008729 4.4e-76 290.0 546 43.2
TAR375G0455 Trochodendron aralioides HOM05D006954 ORTHO05D008729 1.6e-73 281.6 376 48.1
COL.COLO4_12483 Corchorus olitorius HOM05D006954 ORTHO05D008729 4.6e-73 280.0 512 41.2
TAR375G1092 Trochodendron aralioides HOM05D006954 ORTHO05D008729 7.8e-73 279.3 605 37.7
Gorai.001G175100 Gossypium raimondii HOM05D006954 ORTHO05D008729 3.0e-72 277.3 546 42.5
Ciclev10023836m.g Citrus clementina HOM05D006638 ORTHO05D008246 1.9e-71 274.6 525 40.0
Dinv21639 Davidia involucrata HOM05D006954 ORTHO05D008729 4.7e-62 243.4 346 47.1
GSVIVG01018156001 Vitis vinifera HOM05D006638 ORTHO05D008246 1.7e-59 235.0 508 39.0
Glyma.11G167382 Glycine max HOM05D006954 ORTHO05D008729 4.6e-57 226.9 328 46.0
Solyc01g090850.3 Solanum lycopersicum HOM05D006954 ORTHO05D008729 6.0e-57 226.5 414 40.3
PGSC0003DMG400026019 Solanum tuberosum HOM05D006954 ORTHO05D008729 1.7e-56 224.9 408 40.2
QL12p012133 Quercus lobata HOM05D006954 ORTHO05D008729 5.1e-56 223.4 340 43.5
Sopen01g036590 Solanum pennellii HOM05D006954 ORTHO05D008729 4.3e-55 220.3 409 39.4
Manes.01G080700 Manihot esculenta HOM05D006954 ORTHO05D008729 1.4e-53 215.3 334 43.7
Ah.05g173790 Amaranthus hybridus HOM05D006954 ORTHO05D008729 8.9e-53 212.6 390 42.1
Oeu009770.1 Olea europaea HOM05D006954 ORTHO05D008729 1.2e-52 212.2 406 39.7
Oeu031219.1 Olea europaea HOM05D006954 ORTHO05D008729 6.4e-51 206.5 226 51.3
CAN.G1872.2 Capsicum annuum HOM05D006954 ORTHO05D008729 3.2e-50 204.1 407 38.3
VMungo1383G2724 Vigna mungo HOM05D006954 ORTHO05D008729 2.3e-48 198.0 330 41.5
AUR62013686 Chenopodium quinoa HOM05D006954 ORTHO05D008729 6.6e-48 196.4 321 43.3
AUR62004161 Chenopodium quinoa HOM05D006954 ORTHO05D008729 2.5e-47 194.5 340 41.8
Peaxi162Scf00803g00025 Petunia axillaris HOM05D006954 ORTHO05D008729 4.3e-47 193.7 352 41.2
Rhsim07G0108500 Rhododendron simsii HOM05D001088 ORTHO05D002099 1.3e-46 192.2 375 40.5
Rhsim07G0031700 Rhododendron simsii HOM05D001088 ORTHO05D002099 2.1e-46 191.4 384 39.1
EL10Ac1g00835 Beta vulgaris HOM05D006954 ORTHO05D008729 4.8e-46 190.3 537 35.9
Phvul.008G143700 Phaseolus vulgaris HOM05D006954 ORTHO05D008729 8.1e-46 189.5 399 38.8
arahy.Tifrunner.gnm1.ann1.UR8A7Q Arachis hypogaea HOM05D006954 ORTHO05D008729 2.6e-44 184.5 287 42.9
Nitab4.5_0011151g0020 Nicotiana tabacum HOM05D006954 ORTHO05D008729 1.3e-43 182.2 659 31.1
vmacro14083 Vaccinium macrocarpon HOM05D006954 ORTHO05D008729 1.3e-43 182.2 317 41.6
Nitab4.5_0000859g0170 Nicotiana tabacum HOM05D006954 ORTHO05D008729 3.8e-43 180.6 368 39.1
Ciclev10019520m.g Citrus clementina HOM05D006954 ORTHO05D008729 4.9e-43 180.3 327 40.1
Phvul.010G071500 Phaseolus vulgaris HOM05D006954 ORTHO05D008729 8.4e-43 179.5 403 34.7
QL04p036188 Quercus lobata HOM05D006954 ORTHO05D008729 1.4e-42 178.7 423 36.9
arahy.Tifrunner.gnm1.ann1.LN378K Arachis hypogaea HOM05D006954 ORTHO05D008729 1.9e-42 178.3 309 41.7
Hma1.2p1_0041F.1_g025380 Hydrangea macrophylla HOM05D006954 ORTHO05D008729 2.4e-42 177.9 310 40.6
Lalb_Chr07g0190311 Lupinus albus HOM05D006954 ORTHO05D008729 4.6e-41 173.7 400 36.0
Hund17048 Selenicereus undatus HOM05D006954 ORTHO05D008729 1.8e-40 171.8 539 33.2
PSO017G4363 Papaver somniferum HOM05D006954 ORTHO05D008729 5.1e-40 170.2 400 35.8
Aqoxy7G00762 Aquilegia oxysepala HOM05D006954 ORTHO05D008729 1.1e-39 169.1 351 37.9
Glyma.01G134400 Glycine max HOM05D006954 ORTHO05D008729 3.3e-39 167.5 334 38.9
Actinidia27466 Actinidia chinensis HOM05D001088 ORTHO05D002099 1.1e-37 162.5 408 36.5
Lalb_Chr01g0021361 Lupinus albus HOM05D006954 ORTHO05D008729 1.8e-37 161.8 550 31.6
Glyma.03G033300 Glycine max HOM05D006954 ORTHO05D008729 3.1e-37 161.0 351 38.2
PSO170G0413 Papaver somniferum HOM05D006954 ORTHO05D008729 2.6e-36 157.9 366 36.1
Hma1.2p1_0316F.1_g123150 Hydrangea macrophylla HOM05D006954 ORTHO05D008729 4.5e-36 157.1 340 35.9
Lj3g0019070 Lotus japonicus HOM05D006954 ORTHO05D008729 2.2e-35 154.8 343 35.0
SalBow5G1520 Salvia bowleyana HOM05D006954 ORTHO05D008729 8.4e-35 152.9 295 39.3
Sc02g0002800 Simmondsia chinensis HOM05D006954 ORTHO05D008729 3.2e-34 151.0 357 38.1
Lj8P262T33 Lonicera japonica HOM05D006954 ORTHO05D008729 2.1e-33 148.3 304 41.1
Duzib205G0178 Durio zibethinus HOM05D006954 ORTHO05D008729 3.5e-33 147.5 363 37.2
Lj6C70T9 Lonicera japonica HOM05D006954 ORTHO05D008729 2.3e-32 144.8 337 38.0
Oeu026406.1 Olea europaea HOM05D006954 ORTHO05D008729 3.9e-32 144.1 331 36.6
DCAR_006832 Daucus carota HOM05D001088 ORTHO05D002099 2.5e-31 141.4 316 38.6
Duzib136G0004 Durio zibethinus HOM05D006954 ORTHO05D008729 1.3e-30 139.0 367 37.1
Lj2A217G32 Lonicera japonica HOM05D006954 ORTHO05D008729 1.6e-30 138.7 301 36.9
Psat0s3685g0160 Pisum sativum HOM05D006954 ORTHO05D008729 1.6e-30 138.7 397 31.7
Eucgr.E00424 Eucalyptus grandis HOM05D006954 ORTHO05D008729 2.1e-30 138.3 329 36.2
Ca_19859_v3 Cicer arietinum L. HOM05D006954 ORTHO05D008729 4.8e-30 137.1 350 33.1
TAR636G1544 Trochodendron aralioides HOM05D006954 ORTHO05D008729 1.4e-29 135.6 326 35.0
PGR042G3906 Punica granatum HOM05D006954 ORTHO05D008729 2.4e-29 134.8 375 33.3
RcHm_v2.0_Chr7g0203321 Rosa chinensis HOM05D006954 ORTHO05D008729 5.3e-29 133.7 364 32.7
Prupe.5G069800 Prunus persica HOM05D006954 ORTHO05D008729 1.2e-28 132.5 354 31.6
MBI04_g09501_MAGBIO Magnolia biondii HOM05D006954 ORTHO05D008729 4.9e-27 127.1 344 33.4
HanXRQChr16g0511611 Helianthus annuus HOM05D006954 ORTHO05D008729 1.9e-26 125.2 362 32.6
SHI20280 Sapria himalayana HOM05D006954 ORTHO05D008729 2.5e-26 124.8 290 33.8
ECA233G0962 Erigeron canadensis HOM05D006954 ORTHO05D008729 2.3e-24 118.2 316 32.6
SGA_v2.0_scaffold11G05525 Striga asiatica HOM05D006954 ORTHO05D008729 1.5e-23 115.5 354 32.5
FvH4_5g18930 Fragaria vesca HOM05D006954 ORTHO05D008729 2.5e-23 114.8 346 33.5
FAN04G0536 Fragaria x ananassa HOM05D006954 ORTHO05D008729 4.3e-23 114.0 354 31.6
FAN18G2950 Fragaria x ananassa HOM05D006954 ORTHO05D008729 1.6e-22 112.1 346 33.2
HPP92_008568 Vanilla planifolia HOM05D006954 ORTHO05D008729 2.1e-22 111.7 341 33.7
FAN13G0002 Fragaria x ananassa HOM05D006954 ORTHO05D008729 4.8e-22 110.5 339 32.4
COL.COLO4_37173 Corchorus olitorius HOM05D006954 ORTHO05D008729 2.4e-21 108.2 359 30.1
HanXRQChr06g0168891 Helianthus annuus HOM05D006954 ORTHO05D008729 3.1e-21 107.8 205 37.1
HanXRQChr06g0169051 Helianthus annuus HOM05D006954 ORTHO05D008729 3.1e-21 107.8 205 37.1
Lsat_1_v5_gn_7_8881 Lactuca sativa HOM05D006954 ORTHO05D008729 3.1e-21 107.8 205 36.1
TPR.G4994 Trifolium pratense HOM05D006954 ORTHO05D008246 3.1e-21 107.8 382 29.3
CDE11G0492 Ceratophyllum demersum HOM05D006954 ORTHO05D008729 1.7e-19 102.1 372 31.5
Nn6g33957 Nelumbo nucifera HOM05D006954 ORTHO05D008729 5.0e-19 100.5 227 36.1
arahy.Tifrunner.gnm1.ann1.ADMQ1S Arachis hypogaea HOM05D006954 ORTHO05D008729 1.4e-18 99.0 225 33.3
arahy.Tifrunner.gnm1.ann1.7WP6A4 Arachis hypogaea HOM05D006954 ORTHO05D008729 9.3e-18 96.3 224 32.1
Zm00001eb023500 Zea mays HOM05D006954 ORTHO05D008729 7.9e-17 93.2 440 29.3
Thecc.03G251300 Theobroma cacao HOM05D006954 ORTHO05D008729 1.0e-16 92.8 84 57.1
ECA236G3196 Erigeron canadensis HOM05D006954 ORTHO05D008729 1.3e-16 92.4 470 28.9
Nitab4.5_0000618g0050 Nicotiana tabacum HOM05D020458 ORTHO05D022160 2.3e-16 91.7 307 31.9
Lj9P565T15 Lonicera japonica HOM05D006954 ORTHO05D008729 8.7e-16 89.7 277 28.9
FvH4_7g26910 Fragaria vesca HOM05D018285 ORTHO05D020673 3.3e-15 87.8 69 63.8
Zm00001eb391500 Zea mays HOM05D006954 ORTHO05D008729 3.3e-15 87.8 385 27.0
Nitab4.5_0001076g0060 Nicotiana tabacum HOM05D020458 ORTHO05D022160 1.5e-12 79.0 366 29.2
Solyc06g060730.3 Solanum lycopersicum HOM05D020458 ORTHO05D022160 3.4e-12 77.8 92 40.2
CDE09G0910 Ceratophyllum demersum HOM05D006954 ORTHO05D008729 6.5e-11 73.6 324 29.6
PGSC0003DMG400011881 Solanum tuberosum HOM05D020458 ORTHO05D022160 1.1e-10 72.8 117 34.2
Sopen06g020850 Solanum pennellii HOM05D020458 ORTHO05D022160 3.2e-10 71.2 123 33.3
Actinidia22764 Actinidia chinensis HOM05D006954 ORTHO05D008729 1.6e-09 68.9 328 28.4
Nn3g17397 Nelumbo nucifera HOM05D005220 ORTHO05D006082 6.1e-09 67.0 189 28.6
Thecc.03G097300 Theobroma cacao HOM05D005220 ORTHO05D006082 6.1e-09 67.0 232 28.0
ATR0317G083 Amborella trichopoda HOM05D006954 ORTHO05D008729 1.0e-08 66.2 419 26.5
Cfa019301 Carpinus fangiana HOM05D005220 ORTHO05D006082 3.9e-08 64.3 189 30.7
MELO3C017209.2 Cucumis melo HOM05D005220 ORTHO05D006082 5.1e-08 63.9 212 26.4
Aqoxy3G03583 Aquilegia oxysepala HOM05D005220 ORTHO05D006082 8.8e-08 63.2 189 27.5
Hma1.2p1_0481F.1_g161950 Hydrangea macrophylla HOM05D005220 ORTHO05D006082 8.8e-08 63.2 244 27.5
Potri.017G091700 Populus trichocarpa HOM05D005220 ORTHO05D006082 1.5e-07 62.4 192 26.6
Oeu010241.1 Olea europaea HOM05D005220 ORTHO05D006082 2.6e-07 61.6 198 27.3
Haze_07684 Corylus avellana HOM05D005220 ORTHO05D006082 4.4e-07 60.8 230 28.7
FAN18G2755 Fragaria x ananassa HOM05D006409 ORTHO05D008250 4.4e-07 60.8 200 25.5
Dinv33817 Davidia involucrata HOM05D005220 ORTHO05D006082 5.7e-07 60.5 185 28.1
Sabra17G0080700 Salix brachista HOM05D005220 ORTHO05D006082 5.7e-07 60.5 189 27.5
TAR636G1204 Trochodendron aralioides HOM05D005220 ORTHO05D006082 5.7e-07 60.5 189 28.0
Cc07_g04000 Coffea canephora HOM05D005220 ORTHO05D006082 7.4e-07 60.1 195 28.2
FvH4_5g14276 Fragaria vesca HOM05D005220 ORTHO05D006082 1.3e-06 59.3 185 26.5
CSS0002601 Camellia sinensis var. sinensis HOM05D005220 ORTHO05D006082 1.7e-06 58.9 240 25.4
Ciclev10020317m.g Citrus clementina HOM05D005220 ORTHO05D006082 1.7e-06 58.9 207 25.6
CDE10G0382 Ceratophyllum demersum HOM05D005220 ORTHO05D006082 2.2e-06 58.5 234 24.8
FAN13G1588 Fragaria x ananassa HOM05D006409 ORTHO05D008250 2.2e-06 58.5 185 27.0
TAR629G0541 Trochodendron aralioides HOM05D005220 ORTHO05D006082 2.2e-06 58.5 285 27.7
CiPaw.04G057500 Carya illinoinensis HOM05D005220 ORTHO05D006082 3.7e-06 57.8 183 27.9
TAR622G0939 Trochodendron aralioides HOM05D005220 ORTHO05D006082 3.7e-06 57.8 183 27.9
Oeu062150.1 Olea europaea HOM05D005220 ORTHO05D006082 6.3e-06 57.0 198 25.3


User provided reference genes

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