Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN01G1472 Fragaria x ananassa HOM05D007705 ORTHO05D009720 2.8e-58 228.4 115 100.0
FAN06G1047 Fragaria x ananassa HOM05D007705 ORTHO05D009720 1.7e-39 166.0 115 80.0
FvH4_7g14160 Fragaria vesca HOM05D007705 ORTHO05D009720 5.5e-30 134.4 115 68.7
FAN03G0317 Fragaria x ananassa HOM05D007705 ORTHO05D009720 5.5e-30 134.4 115 68.7
FAN06G1915 Fragaria x ananassa HOM05D007705 ORTHO05D009720 5.5e-30 134.4 115 68.7
FAN10G2029 Fragaria x ananassa HOM05D007705 ORTHO05D009720 5.5e-30 134.4 115 68.7
FAN10G0144 Fragaria x ananassa HOM05D003942 ORTHO05D004527 2.3e-28 129.0 114 65.8
RcHm_v2.0_Chr1g0355061 Rosa chinensis HOM05D007705 ORTHO05D009720 1.6e-26 122.9 115 61.7
RcHm_v2.0_Chr1g0354811 Rosa chinensis HOM05D007705 ORTHO05D009720 3.7e-26 121.7 115 61.7
Prupe.2G168000 Prunus persica HOM05D007705 ORTHO05D009720 4.6e-21 104.8 115 53.9
RcHm_v2.0_Chr4g0404631 Rosa chinensis HOM05D007705 ORTHO05D009720 1.3e-20 103.2 113 55.8
Ciclev10023145m.g Citrus clementina HOM05D007705 ORTHO05D009720 4.3e-19 98.2 116 51.7
TWI14G1368 Tripterygium wilfordii HOM05D007705 ORTHO05D009720 4.3e-19 98.2 113 51.3
Atru.chr5.465 Acer truncatum HOM05D007705 ORTHO05D009720 9.7e-19 97.1 115 50.4
FAN10G1187 Fragaria x ananassa HOM05D007705 ORTHO05D009720 9.7e-19 97.1 115 54.8
Sed0019596 Sechium edule HOM05D007705 ORTHO05D009720 8.2e-18 94.0 115 47.8
MD07G1139100 Malus domestica HOM05D007705 ORTHO05D009720 1.1e-17 93.6 115 47.8
CANSAT56G1956 Cannabis sativa HOM05D007705 ORTHO05D009720 1.4e-17 93.2 116 49.1
COL.COLO4_12699 Corchorus olitorius HOM05D007705 ORTHO05D009720 6.9e-17 90.9 151 41.1
Nn1g01504 Nelumbo nucifera HOM05D007705 ORTHO05D009720 9.0e-17 90.5 115 48.7
Duzib133G1093 Durio zibethinus HOM05D007705 ORTHO05D009720 1.2e-16 90.1 115 49.6
Rhsim07G0016500 Rhododendron simsii HOM05D007705 ORTHO05D009720 1.2e-16 90.1 118 50.8
Thecc.01G360600 Theobroma cacao HOM05D007705 ORTHO05D009720 1.2e-16 90.1 115 49.6
Cc02_g37860 Coffea canephora HOM05D007705 ORTHO05D009720 1.5e-16 89.7 115 47.8
MSTRG.28220 Avicennia marina HOM05D007705 ORTHO05D009720 2.6e-16 89.0 115 45.2
Cpa.g.sc18.244 Carica papaya HOM05D007705 ORTHO05D009720 3.4e-16 88.6 111 50.5
ClCG05G001590 Citrullus lanatus HOM05D007705 ORTHO05D009720 7.7e-16 87.4 115 47.0
CiPaw.01G059800 Carya illinoinensis HOM05D007705 ORTHO05D009720 1.3e-15 86.7 115 46.1
Sabra14G0060000 Salix brachista HOM05D007705 ORTHO05D009720 1.3e-15 86.7 97 48.5
Sed0007089 Sechium edule HOM05D007705 ORTHO05D009720 2.2e-15 85.9 115 44.3
VMungo0331G1758 Vigna mungo HOM05D007705 ORTHO05D009720 2.9e-15 85.5 134 43.3
Gohir.D08G152400 Gossypium hirsutum HOM05D007705 ORTHO05D009720 5.0e-15 84.7 115 47.0
Migut.N01439 Erythranthe guttata HOM05D007705 ORTHO05D009720 6.5e-15 84.3 116 44.8
Lj3g0020568 Lotus japonicus HOM05D007705 ORTHO05D009720 8.5e-15 84.0 115 44.3
Peaxi162Scf00008g02124 Petunia axillaris HOM05D007705 ORTHO05D009720 8.5e-15 84.0 113 46.0
Glyma.18G231800 Glycine max HOM05D007705 ORTHO05D009720 1.9e-14 82.8 115 46.1
CsaV3_3G008980 Cucumis sativus L. HOM05D007705 ORTHO05D009720 2.5e-14 82.4 113 43.4
PGR031G2440 Punica granatum HOM05D007705 ORTHO05D009720 2.5e-14 82.4 115 45.2
Aqoxy2G01039 Aquilegia oxysepala HOM05D007705 ORTHO05D009720 3.2e-14 82.0 115 45.2
MELO3C006116.2 Cucumis melo HOM05D007705 ORTHO05D009720 3.2e-14 82.0 113 43.4
TPR.G15966 Trifolium pratense HOM05D007705 ORTHO05D009720 3.2e-14 82.0 115 42.6
CSS0048404 Camellia sinensis var. sinensis HOM05D007705 ORTHO05D009720 4.2e-14 81.6 92 52.2
Gohir.A08G130900 Gossypium hirsutum HOM05D007705 ORTHO05D009720 4.2e-14 81.6 115 44.3
Lsat_1_v5_gn_4_36241 Lactuca sativa HOM05D007705 ORTHO05D009720 4.2e-14 81.6 110 48.2
Eucgr.D02283 Eucalyptus grandis HOM05D007705 ORTHO05D009720 5.5e-14 81.3 101 48.5
HanXRQChr16g0522821 Helianthus annuus HOM05D007705 ORTHO05D009720 7.2e-14 80.9 115 47.0
SalBow5G0166 Salvia bowleyana HOM05D007705 ORTHO05D009720 9.4e-14 80.5 113 38.9
CAN.G116.6 Capsicum annuum HOM05D007705 ORTHO05D009720 1.2e-13 80.1 113 43.4
GSVIVG01026894001 Vitis vinifera HOM05D007705 ORTHO05D009720 1.6e-13 79.7 98 48.0
Gorai.004G158300 Gossypium raimondii HOM05D007705 ORTHO05D009720 2.1e-13 79.3 115 46.1
Hund16929 Selenicereus undatus HOM05D007705 ORTHO05D009720 2.1e-13 79.3 115 42.6
Phvul.010G097400 Phaseolus vulgaris HOM05D007705 ORTHO05D009720 2.7e-13 79.0 115 43.5
Sc23g0003000 Simmondsia chinensis HOM05D007705 ORTHO05D009720 2.7e-13 79.0 99 46.5
arahy.Tifrunner.gnm1.ann1.SPA1YZ Arachis hypogaea HOM05D007705 ORTHO05D009720 4.6e-13 78.2 115 41.7
Lalb_Chr17g0339761 Lupinus albus HOM05D007705 ORTHO05D009720 4.6e-13 78.2 115 43.5
Medtr8g031010 Medicago truncatula HOM05D007705 ORTHO05D009720 4.6e-13 78.2 115 42.6
arahy.Tifrunner.gnm1.ann1.P4N769 Arachis hypogaea HOM05D007705 ORTHO05D009720 6.1e-13 77.8 115 41.7
PGSC0003DMG400010270 Solanum tuberosum HOM05D007705 ORTHO05D009720 6.1e-13 77.8 113 43.4
FAN28G2457 Fragaria x ananassa HOM05D007705 ORTHO05D009720 7.9e-13 77.4 38 97.4
Manes.01G258400 Manihot esculenta HOM05D007705 ORTHO05D009720 7.9e-13 77.4 94 48.9
Carub.0006s3673 Capsella rubella HOM05D007705 ORTHO05D009720 1.8e-12 76.3 101 45.5
EL10Ac1g00428 Beta vulgaris HOM05D003942 ORTHO05D004527 3.0e-12 75.5 111 40.5
Aa31LG1G11090 Aethionema arabicum HOM05D007705 ORTHO05D009720 8.8e-12 73.9 100 43.0
AUR62004343 Chenopodium quinoa HOM05D007705 ORTHO05D009720 1.1e-11 73.6 111 39.6
AT4G00530 Arabidopsis thaliana HOM05D007705 ORTHO05D009720 1.5e-11 73.2 101 43.6
Glyma.03G010900 Glycine max HOM05D007705 ORTHO05D009720 1.5e-11 73.2 115 41.7
THA.LOC104801441 Tarenaya hassleriana HOM05D007705 ORTHO05D009720 1.5e-11 73.2 109 42.2
Ah.05g180700 Amaranthus hybridus HOM05D007705 ORTHO05D009720 2.0e-11 72.8 112 42.0
AL6G52940 Arabidopsis lyrata HOM05D007705 ORTHO05D009720 2.0e-11 72.8 101 44.6
CDE02G0341 Ceratophyllum demersum HOM05D007705 ORTHO05D009720 3.3e-11 72.0 101 42.6
Nitab4.5_0007064g0050 Nicotiana tabacum HOM05D007705 ORTHO05D009720 3.3e-11 72.0 38 89.5
arahy.Tifrunner.gnm1.ann1.ELVS11 Arachis hypogaea HOM05D007705 ORTHO05D009720 4.3e-11 71.6 116 39.7
arahy.Tifrunner.gnm1.ann1.5FJ7GX Arachis hypogaea HOM05D007705 ORTHO05D009720 5.7e-11 71.2 116 40.5
Potri.014G082800 Populus trichocarpa HOM05D007705 ORTHO05D009720 5.7e-11 71.2 93 44.1
Thhalv10009285m.g Eutrema salsugineum HOM05D007705 ORTHO05D009720 1.3e-10 70.1 96 43.8
PSO478G4887 Papaver somniferum HOM05D007705 ORTHO05D009720 1.3e-10 70.1 102 40.2
CARHR248690 Cardamine hirsuta HOM05D007705 ORTHO05D009720 1.7e-10 69.7 97 43.3
BcaB03g13609 Brassica carinata HOM05D007705 ORTHO05D009720 4.8e-10 68.2 96 43.8
Nitab4.5_0000386g0120 Nicotiana tabacum HOM05D007705 ORTHO05D009720 4.8e-10 68.2 38 86.8
A10p00310 Brassica napus HOM05D007705 ORTHO05D009720 6.3e-10 67.8 93 45.2
C05p00320 Brassica napus HOM05D007705 ORTHO05D009720 6.3e-10 67.8 93 45.2
BolC5t28822H Brassica oleracea HOM05D007705 ORTHO05D009720 6.3e-10 67.8 93 45.2
BraA10t42308Z Brassica rapa HOM05D007705 ORTHO05D009720 6.3e-10 67.8 93 45.2
Sp1g00580 Schrenkiella parvula HOM05D007705 ORTHO05D009720 6.3e-10 67.8 96 43.8
CARHR000600 Cardamine hirsuta HOM05D007705 ORTHO05D009720 1.4e-09 66.6 94 42.6
arahy.Tifrunner.gnm1.ann1.UQ99Y2 Arachis hypogaea HOM05D007705 ORTHO05D009720 2.4e-09 65.9 115 36.5
unitig_22.g6810 Utricularia gibba HOM05D007705 ORTHO05D009720 6.9e-09 64.3 116 39.7
AT1G01725 Arabidopsis thaliana HOM05D007705 ORTHO05D009720 2.0e-08 62.8 94 39.4
arahy.Tifrunner.gnm1.ann1.1PM303 Arachis hypogaea HOM05D007705 ORTHO05D009720 2.0e-08 62.8 94 39.4
ATR0680G396 Amborella trichopoda HOM05D007705 ORTHO05D009720 2.6e-08 62.4 101 38.6
Hma1.2p1_0001F.1_g001390 Hydrangea macrophylla HOM05D007705 ORTHO05D009720 7.7e-08 60.8 38 71.1
MBI18_g25521_MAGBIO Magnolia biondii HOM05D007705 ORTHO05D009720 7.7e-08 60.8 112 38.4
SHI13438 Sapria himalayana HOM05D007705 ORTHO05D009720 8.5e-07 57.4 38 63.2
ECA234G1137 Erigeron canadensis HOM05D003942 ORTHO05D004527 5.5e-06 54.7 83 42.2


User provided reference genes

Program Settings