Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN01G1391 Fragaria x ananassa HOM05D004051 ORTHO05D004480 2.5e-40 168.3 83 100.0
FvH4_7g31780 Fragaria vesca HOM05D004051 ORTHO05D004480 8.8e-38 159.8 80 97.5
FAN10G0142 Fragaria x ananassa HOM05D004051 ORTHO05D004480 3.7e-36 154.5 80 95.0
FAN10G1914 Fragaria x ananassa HOM05D004051 ORTHO05D004480 1.0e-33 146.4 92 82.6
FAN03G1224 Fragaria x ananassa HOM05D004051 ORTHO05D004480 5.0e-33 144.1 75 94.7
RcHm_v2.0_Chr1g0381011 Rosa chinensis HOM05D004051 ORTHO05D004480 1.4e-32 142.5 80 88.8
FAN06G1266 Fragaria x ananassa HOM05D004051 ORTHO05D004480 2.9e-25 118.2 69 84.1
MD01G1219400 Malus domestica HOM05D004051 ORTHO05D004480 2.1e-23 112.1 80 73.8
CiPaw.05G252200 Carya illinoinensis HOM05D004051 ORTHO05D004480 2.4e-19 98.6 83 62.7
CiPaw.05G255100 Carya illinoinensis HOM05D004051 ORTHO05D004480 2.4e-19 98.6 83 62.7
FAN06G1557 Fragaria x ananassa HOM05D004051 ORTHO05D004480 7.0e-19 97.1 54 90.7
Manes.06G159300 Manihot esculenta HOM05D004051 ORTHO05D004480 1.2e-18 96.3 79 63.3
CiPaw.05G255500 Carya illinoinensis HOM05D004051 ORTHO05D004480 1.6e-18 95.9 83 61.4
CANSAT21G2574 Cannabis sativa HOM05D004051 ORTHO05D004480 3.5e-18 94.7 83 60.2
Thecc.03G195700 Theobroma cacao HOM05D004051 ORTHO05D004480 4.5e-18 94.4 88 58.0
Sed0007169 Sechium edule HOM05D004051 ORTHO05D004480 5.9e-18 94.0 88 58.0
Gorai.004G111400 Gossypium raimondii HOM05D004051 ORTHO05D004480 7.7e-18 93.6 90 55.6
Gohir.D08G104000 Gossypium hirsutum HOM05D004051 ORTHO05D004480 1.0e-17 93.2 90 55.6
Ciclev10006352m.g Citrus clementina HOM05D004051 ORTHO05D004480 1.3e-17 92.8 74 64.9
Hund04853 Selenicereus undatus HOM05D004051 ORTHO05D004480 1.7e-17 92.4 82 56.1
Actinidia03163 Actinidia chinensis HOM05D004051 ORTHO05D004480 2.2e-17 92.0 88 56.8
Dinv29295 Davidia involucrata HOM05D004051 ORTHO05D004480 3.8e-17 91.3 85 57.6
QL09p009613 Quercus lobata HOM05D004051 ORTHO05D004480 5.0e-17 90.9 81 60.5
Potri.012G011600 Populus trichocarpa HOM05D004051 ORTHO05D004480 1.5e-16 89.4 89 56.2
TAR629G1304 Trochodendron aralioides HOM05D004051 ORTHO05D004480 1.5e-16 89.4 86 57.0
Gohir.A08G096024 Gossypium hirsutum HOM05D004051 ORTHO05D004480 1.9e-16 89.0 90 53.3
AUR62019374 Chenopodium quinoa HOM05D004051 ORTHO05D004480 2.5e-16 88.6 83 56.6
ClCG01G000480 Citrullus lanatus HOM05D004051 ORTHO05D004480 2.5e-16 88.6 83 56.6
Nn1g01872 Nelumbo nucifera HOM05D004051 ORTHO05D004480 3.2e-16 88.2 85 56.5
Rhsim09G0205000 Rhododendron simsii HOM05D004051 ORTHO05D004480 4.2e-16 87.8 86 57.0
arahy.Tifrunner.gnm1.ann1.T1KBZJ Arachis hypogaea HOM05D004051 ORTHO05D004480 9.4e-16 86.7 85 58.8
A02p40750 Brassica napus HOM05D004051 ORTHO05D004480 1.2e-15 86.3 82 56.1
BcaB07g29898 Brassica carinata HOM05D004051 ORTHO05D004480 2.7e-15 85.1 82 54.9
HanXRQChr03g0083481 Helianthus annuus HOM05D004051 ORTHO05D004480 2.7e-15 85.1 85 58.8
Phvul.002G298100 Phaseolus vulgaris HOM05D004051 ORTHO05D004480 2.7e-15 85.1 81 58.0
Atru.chr1.148 Acer truncatum HOM05D004051 ORTHO05D004480 3.6e-15 84.7 79 57.0
AL6G35560 Arabidopsis lyrata HOM05D004051 ORTHO05D004480 3.6e-15 84.7 76 59.2
CDE09G0659 Ceratophyllum demersum HOM05D004051 ORTHO05D004480 4.7e-15 84.3 82 53.7
PGR042G3499 Punica granatum HOM05D004051 ORTHO05D004480 4.7e-15 84.3 85 52.9
CARHR189350 Cardamine hirsuta HOM05D004051 ORTHO05D004480 6.1e-15 84.0 76 59.2
arahy.Tifrunner.gnm1.ann1.E0UY0G Arachis hypogaea HOM05D004051 ORTHO05D004480 8.0e-15 83.6 85 57.6
Carub.0006s2191 Capsella rubella HOM05D004051 ORTHO05D004480 8.0e-15 83.6 76 59.2
BcaNung01214 Brassica carinata HOM05D004051 ORTHO05D004480 1.0e-14 83.2 78 56.4
Sp2g23150 Schrenkiella parvula HOM05D004051 ORTHO05D004480 1.0e-14 83.2 79 55.7
Thhalv10005218m.g Eutrema salsugineum HOM05D004051 ORTHO05D004480 1.4e-14 82.8 82 53.7
Sopen08g030650 Solanum pennellii HOM05D004051 ORTHO05D004480 1.4e-14 82.8 83 53.0
Dinv37531 Davidia involucrata HOM05D004051 ORTHO05D004480 1.8e-14 82.4 80 57.5
Oeu054023.1 Olea europaea HOM05D004051 ORTHO05D004480 1.8e-14 82.4 76 60.5
AT5G24165 Arabidopsis thaliana HOM05D004051 ORTHO05D004480 2.3e-14 82.0 76 57.9
MELO3C005880.2 Cucumis melo HOM05D004051 ORTHO05D004480 2.3e-14 82.0 82 56.1
ECA240G0536 Erigeron canadensis HOM05D004051 ORTHO05D004480 2.3e-14 82.0 87 56.3
GSVIVG01038715001 Vitis vinifera HOM05D004051 ORTHO05D004480 2.3e-14 82.0 70 58.6
BcaNung01808 Brassica carinata HOM05D004051 ORTHO05D004480 3.0e-14 81.6 82 53.7
CSS0008906 Camellia sinensis var. sinensis HOM05D004051 ORTHO05D004480 3.0e-14 81.6 82 54.9
CDE02G2345 Ceratophyllum demersum HOM05D004051 ORTHO05D004480 6.8e-14 80.5 77 53.2
Cc08_g16090 Coffea canephora HOM05D004051 ORTHO05D004480 6.8e-14 80.5 82 57.3
DCAR_010606 Daucus carota HOM05D004051 ORTHO05D004480 6.8e-14 80.5 79 57.0
MBI06_g08462_MAGBIO Magnolia biondii HOM05D004051 ORTHO05D004480 6.8e-14 80.5 84 53.6
Sc13g0009750 Simmondsia chinensis HOM05D004051 ORTHO05D004480 6.8e-14 80.5 79 55.7
Duzib205G1876 Durio zibethinus HOM05D004051 ORTHO05D004480 8.8e-14 80.1 83 55.4
Gohir.D12G237933 Gossypium hirsutum HOM05D004051 ORTHO05D004480 8.8e-14 80.1 83 55.4
Gorai.008G254600 Gossypium raimondii HOM05D004051 ORTHO05D004480 8.8e-14 80.1 83 55.4
Nn3g19011 Nelumbo nucifera HOM05D004051 ORTHO05D004480 8.8e-14 80.1 78 55.1
Prupe.2G311800 Prunus persica HOM05D004051 ORTHO05D004480 8.8e-14 80.1 63 65.1
EL10Ac3g05304 Beta vulgaris HOM05D004051 ORTHO05D004480 1.2e-13 79.7 78 53.8
GSVIVG01019535001 Vitis vinifera HOM05D004051 ORTHO05D004480 1.5e-13 79.3 84 53.6
Lalb_Chr05g0224141 Lupinus albus HOM05D004051 ORTHO05D004480 2.0e-13 79.0 76 55.3
Solyc08g082390.3 Solanum lycopersicum HOM05D004051 ORTHO05D004480 2.0e-13 79.0 83 51.8
unitig_88.g27640 Utricularia gibba HOM05D004051 ORTHO05D004480 2.6e-13 78.6 79 57.0
Dinv38829 Davidia involucrata HOM05D004051 ORTHO05D004480 3.4e-13 78.2 80 56.2
Phvul.002G164300 Phaseolus vulgaris HOM05D004051 ORTHO05D004480 3.4e-13 78.2 79 54.4
Actinidia22162 Actinidia chinensis HOM05D004051 ORTHO05D004480 4.4e-13 77.8 82 53.7
Psat7g025560 Pisum sativum HOM05D004051 ORTHO05D004480 4.4e-13 77.8 79 53.2
TPR.G25572 Trifolium pratense HOM05D004051 ORTHO05D004480 5.7e-13 77.4 84 53.6
Gohir.A12G236600 Gossypium hirsutum HOM05D004051 ORTHO05D004480 9.8e-13 76.6 83 54.2
Prupe.5G120400 Prunus persica HOM05D004051 ORTHO05D004480 9.8e-13 76.6 83 54.2
HPP92_020160 Vanilla planifolia HOM05D004051 ORTHO05D004480 9.8e-13 76.6 92 46.7
Ah.07g197450 Amaranthus hybridus HOM05D004051 ORTHO05D004480 1.3e-12 76.3 81 50.6
Glyma.01G225400 Glycine max HOM05D004051 ORTHO05D004480 1.3e-12 76.3 84 51.2
Manes.02G009700 Manihot esculenta HOM05D004051 ORTHO05D004480 1.3e-12 76.3 82 57.3
Potri.003G140300 Populus trichocarpa HOM05D004051 ORTHO05D004480 1.3e-12 76.3 81 54.3
Thecc.03G298400 Theobroma cacao HOM05D004051 ORTHO05D004480 1.3e-12 76.3 83 51.8
THA.LOC104821369 Tarenaya hassleriana HOM05D004051 ORTHO05D004480 1.7e-12 75.9 84 47.6
Ciclev10023430m.g Citrus clementina HOM05D004051 ORTHO05D004480 2.8e-12 75.1 81 55.6
CSS0023187 Camellia sinensis var. sinensis HOM05D004051 ORTHO05D004480 3.7e-12 74.7 82 52.4
Glyma.11G017600 Glycine max HOM05D004051 ORTHO05D004480 3.7e-12 74.7 80 55.0
QL02p030350 Quercus lobata HOM05D004051 ORTHO05D004480 3.7e-12 74.7 80 56.2
Sed0004965 Sechium edule HOM05D004051 ORTHO05D004480 3.7e-12 74.7 86 53.5
arahy.Tifrunner.gnm1.ann1.ZDLG37 Arachis hypogaea HOM05D004051 ORTHO05D004480 4.8e-12 74.3 83 53.0
Oeu063517.1 Olea europaea HOM05D004051 ORTHO05D004480 4.8e-12 74.3 84 48.8
LjContig00312_ERROPOS870357g0027890 Lotus japonicus HOM05D004051 ORTHO05D004480 6.3e-12 73.9 79 50.6
CARHR231280 Cardamine hirsuta HOM05D004051 ORTHO05D004480 8.3e-12 73.6 76 52.6
BcaNung04241 Brassica carinata HOM05D004051 ORTHO05D004480 1.1e-11 73.2 74 52.7
RcHm_v2.0_Chr7g0194731 Rosa chinensis HOM05D004051 ORTHO05D004480 1.1e-11 73.2 80 52.5
Solyc08g008330.3 Solanum lycopersicum HOM05D004051 ORTHO05D004480 1.1e-11 73.2 84 50.0
Sopen08g004210 Solanum pennellii HOM05D004051 ORTHO05D004480 1.1e-11 73.2 84 50.0
TWI81G0780 Tripterygium wilfordii HOM05D004051 ORTHO05D004480 1.1e-11 73.2 82 53.7
CiPaw.11G121000 Carya illinoinensis HOM05D004051 ORTHO05D004480 1.4e-11 72.8 79 50.6
FvH4_5g04640 Fragaria vesca HOM05D004051 ORTHO05D004480 1.4e-11 72.8 80 52.5
FAN08G0063 Fragaria x ananassa HOM05D004051 ORTHO05D004480 1.4e-11 72.8 80 52.5
FAN18G0508 Fragaria x ananassa HOM05D004051 ORTHO05D004480 1.4e-11 72.8 80 52.5
MD06G1107300 Malus domestica HOM05D004051 ORTHO05D004480 1.4e-11 72.8 79 53.2
EL10Ac5g12918 Beta vulgaris HOM05D004051 ORTHO05D004480 2.4e-11 72.0 78 52.6
PSO063G6907 Papaver somniferum HOM05D004051 ORTHO05D004480 3.1e-11 71.6 76 52.6
HanXRQChr13g0415281 Helianthus annuus HOM05D004051 ORTHO05D004480 4.1e-11 71.2 76 51.3
Ca_17505_v3 Cicer arietinum L. HOM05D000749 ORTHO05D005685 5.4e-11 70.9 78 53.8
Thhalv10026982m.g Eutrema salsugineum HOM05D004051 ORTHO05D004480 7.0e-11 70.5 76 51.3
vmacro11468 Vaccinium macrocarpon HOM05D004051 ORTHO05D004480 7.0e-11 70.5 77 50.6
HPP92_020177 Vanilla planifolia HOM05D004051 ORTHO05D004480 7.0e-11 70.5 89 44.9
BcaNung01095 Brassica carinata HOM05D004051 ORTHO05D004480 9.1e-11 70.1 76 51.3
BcaNung04081 Brassica carinata HOM05D004051 ORTHO05D004480 9.1e-11 70.1 76 51.3
DCAR_006488 Daucus carota HOM05D004051 ORTHO05D004480 9.1e-11 70.1 78 53.8
Gohir.D12G237800 Gossypium hirsutum HOM05D004051 ORTHO05D004480 9.1e-11 70.1 78 52.6
Actinidia04200 Actinidia chinensis HOM05D004051 ORTHO05D004480 1.2e-10 69.7 80 50.0
BcaC09g50935 Brassica carinata HOM05D004051 ORTHO05D004480 1.2e-10 69.7 76 51.3
Lj4g0013283 Lotus japonicus HOM05D004051 ORTHO05D004480 1.2e-10 69.7 74 48.6
Aa31LG11G3430 Aethionema arabicum HOM05D004051 ORTHO05D004480 1.6e-10 69.3 78 48.7
AT4G23885 Arabidopsis thaliana HOM05D004051 ORTHO05D004480 1.6e-10 69.3 76 51.3
PGR042G1109 Punica granatum HOM05D004051 ORTHO05D004480 1.6e-10 69.3 78 55.1
VMungo0251G1927 Vigna mungo HOM05D000749 ORTHO05D005685 1.6e-10 69.3 75 53.3
C07p43550 Brassica napus HOM05D004051 ORTHO05D004480 2.0e-10 68.9 77 49.4
Sp7g21840 Schrenkiella parvula HOM05D004051 ORTHO05D004480 3.5e-10 68.2 74 52.7
PGSC0003DMG400012279 Solanum tuberosum HOM05D004051 ORTHO05D004480 3.5e-10 68.2 83 49.4
TWI15G0384 Tripterygium wilfordii HOM05D004051 ORTHO05D004480 3.5e-10 68.2 82 51.2
AL7G29460 Arabidopsis lyrata HOM05D004051 ORTHO05D004480 5.9e-10 67.4 76 47.4
BolC7t44882H Brassica oleracea HOM05D004051 ORTHO05D004480 5.9e-10 67.4 77 48.1
Migut.A00641 Erythranthe guttata HOM05D004051 ORTHO05D004480 5.9e-10 67.4 87 49.4
THA.LOC104815090 Tarenaya hassleriana HOM05D004051 ORTHO05D004480 5.9e-10 67.4 83 47.0
Hma1.2p1_1461F.1_g285050 Hydrangea macrophylla HOM05D004051 ORTHO05D004480 7.7e-10 67.0 76 50.0
Hma1.2p1_2808F.1_g328863 Hydrangea macrophylla HOM05D004051 ORTHO05D004480 7.7e-10 67.0 76 50.0
Peaxi162Scf00102g01842 Petunia axillaris HOM05D004051 ORTHO05D004480 7.7e-10 67.0 79 50.6
COL.COLO4_10706 Corchorus olitorius HOM05D004051 ORTHO05D004480 1.3e-09 66.2 72 54.2
Duzib084G0187 Durio zibethinus HOM05D000749 ORTHO05D005685 1.3e-09 66.2 78 50.0
Atru.chr9.1978 Acer truncatum HOM05D004051 ORTHO05D004480 1.7e-09 65.9 74 51.4
Atru.chr9.1993 Acer truncatum HOM05D004051 ORTHO05D004480 1.7e-09 65.9 74 51.4
Medtr8g099465 Medicago truncatula HOM05D004051 ORTHO05D004480 2.9e-09 65.1 71 50.7
Carub.0007s1723 Capsella rubella HOM05D004051 ORTHO05D004480 3.8e-09 64.7 74 50.0
Eucgr.E00869 Eucalyptus grandis HOM05D004051 ORTHO05D004480 3.8e-09 64.7 76 50.0
Sc01g0010310 Simmondsia chinensis HOM05D004051 ORTHO05D004480 3.8e-09 64.7 80 50.0
A06p35000 Brassica napus HOM05D004051 ORTHO05D004480 5.0e-09 64.3 77 46.8
BraA06t26423Z Brassica rapa HOM05D004051 ORTHO05D004480 6.5e-09 63.9 77 46.8
A01p15190 Brassica napus HOM05D004051 ORTHO05D004480 8.5e-09 63.5 73 49.3
BraA01t01457Z Brassica rapa HOM05D004051 ORTHO05D004480 8.5e-09 63.5 73 49.3
A03p54820 Brassica napus HOM05D004051 ORTHO05D004480 1.1e-08 63.2 71 49.3
ClCG01G001670 Citrullus lanatus HOM05D004051 ORTHO05D004480 1.1e-08 63.2 84 45.2
PGSC0003DMG400005791 Solanum tuberosum HOM05D004051 ORTHO05D004480 1.1e-08 63.2 85 44.7
FAN13G0943 Fragaria x ananassa HOM05D004051 ORTHO05D004480 1.5e-08 62.8 77 48.1
C07p53180 Brassica napus HOM05D004051 ORTHO05D004480 1.9e-08 62.4 73 45.2
BraA03t14549Z Brassica rapa HOM05D004051 ORTHO05D004480 2.5e-08 62.0 71 47.9
MD06G1107200 Malus domestica HOM05D004051 ORTHO05D004480 2.5e-08 62.0 74 47.3
Ah.12g052570 Amaranthus hybridus HOM05D000749 ORTHO05D005685 4.2e-08 61.2 76 47.4
AUR62010843 Chenopodium quinoa HOM05D004051 ORTHO05D004480 5.5e-08 60.8 73 47.9
FAN18G2387 Fragaria x ananassa HOM05D004051 ORTHO05D004480 5.5e-08 60.8 74 48.6
AUR62006115 Chenopodium quinoa HOM05D004051 ORTHO05D004480 9.4e-08 60.1 52 55.8
BcaC03g18002 Brassica carinata HOM05D016815 ORTHO05D020093 1.2e-07 59.7 65 52.3
Aa31LG6G7140 Aethionema arabicum HOM05D004051 ORTHO05D004480 1.6e-07 59.3 75 48.0
C01p19120 Brassica napus HOM05D004051 ORTHO05D004480 1.6e-07 59.3 73 46.6
SalBow1G7115 Salvia bowleyana HOM05D004051 ORTHO05D004480 1.6e-07 59.3 83 44.6
SGA_v2.0_scaffold96G29014 Striga asiatica HOM05D004051 ORTHO05D004480 1.6e-07 59.3 84 44.0
Sabra03G0101300 Salix brachista HOM05D004051 ORTHO05D004480 2.7e-07 58.5 92 39.1
SalBow1G2120 Salvia bowleyana HOM05D004051 ORTHO05D004480 3.6e-07 58.2 83 44.6
BolC1t01838H Brassica oleracea HOM05D004051 ORTHO05D004480 6.1e-07 57.4 71 46.5
Zm00001eb277870 Zea mays HOM05D004051 ORTHO05D004480 8.0e-07 57.0 96 42.7
AagrBONN_evm.TU.Sc2ySwM_369.239 Anthoceros agrestis HOM05D004051 ORTHO05D004480 1.0e-06 56.6 81 40.7
Cfa016383 Carpinus fangiana HOM05D021618 ORTHO05D004480 1.4e-06 56.2 65 46.2
CsaV3_5G001830 Cucumis sativus L. HOM05D000749 ORTHO05D005685 4.0e-06 54.7 90 41.1
Eucgr.C00183 Eucalyptus grandis HOM05D004051 ORTHO05D004480 4.0e-06 54.7 59 50.8
Lj2A167G43 Lonicera japonica HOM05D004051 ORTHO05D004480 6.8e-06 53.9 63 50.8
Zm00001eb383200 Zea mays HOM05D004051 ORTHO05D004480 6.8e-06 53.9 89 39.3


User provided reference genes

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