Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN01G1354 Fragaria x ananassa HOM05D001318 ORTHO05D001152 4.8e-108 394.4 190 100.0
FAN10G1440 Fragaria x ananassa HOM05D001318 ORTHO05D001152 6.8e-78 294.3 148 94.6
FvH4_7g31180 Fragaria vesca HOM05D001318 ORTHO05D001152 2.3e-70 269.2 152 89.5
FAN06G0745 Fragaria x ananassa HOM05D001318 ORTHO05D001152 2.3e-70 269.2 152 89.5
FAN06G4906 Fragaria x ananassa HOM05D001318 ORTHO05D001152 2.3e-70 269.2 152 89.5
FAN10G4115 Fragaria x ananassa HOM05D001318 ORTHO05D001152 2.3e-65 252.7 186 72.0
RcHm_v2.0_Chr1g0380221 Rosa chinensis HOM05D001318 ORTHO05D001152 8.7e-57 224.2 152 76.3
FAN03G0090 Fragaria x ananassa HOM05D001318 ORTHO05D001152 1.5e-48 196.8 146 71.2
Prupe.2G308500 Prunus persica HOM05D001318 ORTHO05D001152 1.5e-29 133.7 146 52.7
Aqoxy5G04208 Aquilegia oxysepala HOM05D001318 ORTHO05D001152 1.8e-22 110.2 156 40.4
MD07G1286500 Malus domestica HOM05D001318 ORTHO05D001152 3.4e-21 105.9 123 50.4
MD01G1216500 Malus domestica HOM05D001318 ORTHO05D001152 6.5e-20 101.7 123 51.2
Manes.05G023900 Manihot esculenta HOM05D001318 ORTHO05D001152 6.5e-20 101.7 147 44.2
GSVIVG01028709001 Vitis vinifera HOM05D001318 ORTHO05D001152 1.4e-19 100.5 154 40.3
FAN03G1438 Fragaria x ananassa HOM05D001318 ORTHO05D001152 4.2e-19 99.0 148 43.9
Manes.01G247000 Manihot esculenta HOM05D001318 ORTHO05D001152 5.5e-19 98.6 143 43.4
Ca_23541_v3 Cicer arietinum L. HOM05D001318 ORTHO05D001152 7.2e-19 98.2 145 44.1
Glyma.07G056500 Glycine max HOM05D001318 ORTHO05D001152 7.2e-19 98.2 153 42.5
FvH4_7g16290 Fragaria vesca HOM05D001318 ORTHO05D001152 9.4e-19 97.8 148 43.2
FAN06G1952 Fragaria x ananassa HOM05D001318 ORTHO05D001152 9.4e-19 97.8 148 43.2
FAN06G3084 Fragaria x ananassa HOM05D001318 ORTHO05D001152 9.4e-19 97.8 148 43.2
FAN10G1039 Fragaria x ananassa HOM05D001318 ORTHO05D001152 9.4e-19 97.8 148 43.2
FAN10G2334 Fragaria x ananassa HOM05D001318 ORTHO05D001152 9.4e-19 97.8 148 43.2
arahy.Tifrunner.gnm1.ann1.Z287JL Arachis hypogaea HOM05D001318 ORTHO05D001152 1.2e-18 97.4 154 42.9
arahy.Tifrunner.gnm1.ann1.1EFM0N Arachis hypogaea HOM05D001318 ORTHO05D001152 2.1e-18 96.7 154 42.9
Lj9C597T7 Lonicera japonica HOM05D001318 ORTHO05D001152 2.7e-18 96.3 156 41.7
VMungo0331G0636 Vigna mungo HOM05D001318 ORTHO05D001152 2.7e-18 96.3 154 41.6
MBI06_g05048_MAGBIO Magnolia biondii HOM05D001318 ORTHO05D001152 3.6e-18 95.9 153 42.5
Nn3g19027 Nelumbo nucifera HOM05D001318 ORTHO05D001152 7.9e-18 94.7 161 41.0
CiPaw.01G074900 Carya illinoinensis HOM05D001318 ORTHO05D001152 1.0e-17 94.4 158 38.0
Phvul.010G113000 Phaseolus vulgaris HOM05D001318 ORTHO05D001152 1.0e-17 94.4 144 43.1
PSO512G0001 Papaver somniferum HOM05D001318 ORTHO05D001152 1.8e-17 93.6 134 40.3
Rhsim01G0172000 Rhododendron simsii HOM05D001318 ORTHO05D001152 1.8e-17 93.6 151 43.0
TPR.G15350 Trifolium pratense HOM05D001318 ORTHO05D001152 2.3e-17 93.2 149 40.9
Glyma.19G255200 Glycine max HOM05D001318 ORTHO05D001152 3.0e-17 92.8 126 43.7
CDE10G0555 Ceratophyllum demersum HOM05D001318 ORTHO05D001152 3.9e-17 92.4 152 38.8
Haze_15644 Corylus avellana HOM05D001318 ORTHO05D001152 3.9e-17 92.4 160 38.8
Lsat_1_v5_gn_5_1601 Lactuca sativa HOM05D001318 ORTHO05D001152 3.9e-17 92.4 128 46.1
Psat4g160600 Pisum sativum HOM05D001318 ORTHO05D001152 5.1e-17 92.0 153 41.2
COL.COLO4_06296 Corchorus olitorius HOM05D001318 ORTHO05D001152 6.7e-17 91.7 152 42.1
Medtr8g027760 Medicago truncatula HOM05D001318 ORTHO05D001152 6.7e-17 91.7 155 40.0
Nitab4.5_0004485g0050 Nicotiana tabacum HOM05D001318 ORTHO05D001152 6.7e-17 91.7 159 39.6
Sopen01g006170 Solanum pennellii HOM05D001318 ORTHO05D001152 8.8e-17 91.3 158 37.3
PGSC0003DMG400009613 Solanum tuberosum HOM05D001318 ORTHO05D001152 8.8e-17 91.3 158 37.3
vmacro12680 Vaccinium macrocarpon HOM05D001318 ORTHO05D001152 8.8e-17 91.3 151 42.4
CDE10G0647 Ceratophyllum demersum HOM05D001318 ORTHO05D001152 1.1e-16 90.9 152 38.8
AUR62004477 Chenopodium quinoa HOM05D001318 ORTHO05D001152 1.1e-16 90.9 152 38.8
CsaV3_3G008120 Cucumis sativus L. HOM05D001318 ORTHO05D001152 1.1e-16 90.9 151 41.7
Nitab4.5_0000703g0030 Nicotiana tabacum HOM05D001318 ORTHO05D001152 1.1e-16 90.9 159 39.6
SalBow3G0525 Salvia bowleyana HOM05D001318 ORTHO05D001152 1.1e-16 90.9 159 39.6
Sed0000240 Sechium edule HOM05D001318 ORTHO05D001152 1.1e-16 90.9 151 42.4
TAR375G0770 Trochodendron aralioides HOM05D001318 ORTHO05D001152 1.1e-16 90.9 157 38.9
DCAR_008662 Daucus carota HOM05D001318 ORTHO05D001152 1.5e-16 90.5 131 44.3
HanXRQChr11g0334041 Helianthus annuus HOM05D001318 ORTHO05D001152 1.5e-16 90.5 143 42.0
CiPaw.02G040000 Carya illinoinensis HOM05D001318 ORTHO05D001152 2.0e-16 90.1 160 38.8
ECA246G1590 Erigeron canadensis HOM05D001318 ORTHO05D001152 2.0e-16 90.1 127 44.9
Glyma.16G025500 Glycine max HOM05D001318 ORTHO05D001152 2.5e-16 89.7 157 39.5
Gohir.A08G034100 Gossypium hirsutum HOM05D001318 ORTHO05D001152 2.5e-16 89.7 133 43.6
Gohir.D08G044600 Gossypium hirsutum HOM05D001318 ORTHO05D001152 2.5e-16 89.7 133 43.6
Gorai.004G043600 Gossypium raimondii HOM05D001318 ORTHO05D001152 2.5e-16 89.7 133 43.6
PSO135G0166 Papaver somniferum HOM05D001318 ORTHO05D001152 2.5e-16 89.7 132 41.7
PSO384G5067 Papaver somniferum HOM05D001318 ORTHO05D001152 2.5e-16 89.7 132 41.7
ClCG05G000890 Citrullus lanatus HOM05D001318 ORTHO05D001152 3.3e-16 89.4 152 41.4
HanXRQChr05g0159941 Helianthus annuus HOM05D001318 ORTHO05D001152 3.3e-16 89.4 131 45.8
Lj1g0023709 Lotus japonicus HOM05D001318 ORTHO05D001152 3.3e-16 89.4 154 37.7
Lalb_Chr04g0254451 Lupinus albus HOM05D001318 ORTHO05D001152 4.3e-16 89.0 153 39.2
TWI23G0869 Tripterygium wilfordii HOM05D001318 ORTHO05D001152 4.3e-16 89.0 155 36.8
Gohir.A12G111800 Gossypium hirsutum HOM05D001318 ORTHO05D001152 5.7e-16 88.6 131 42.0
Atru.chr5.656 Acer truncatum HOM05D001318 ORTHO05D001152 7.4e-16 88.2 154 40.3
Oeu004944.2 Olea europaea HOM05D001318 ORTHO05D001152 7.4e-16 88.2 131 42.7
Sed0018551 Sechium edule HOM05D001318 ORTHO05D001152 7.4e-16 88.2 151 39.7
Sc01g0002770 Simmondsia chinensis HOM05D001318 ORTHO05D001152 7.4e-16 88.2 153 37.9
Thecc.01G343900 Theobroma cacao HOM05D001318 ORTHO05D001152 7.4e-16 88.2 123 44.7
MSTRG.17335 Avicennia marina HOM05D001318 ORTHO05D001152 9.7e-16 87.8 152 40.1
CSS0025773 Camellia sinensis var. sinensis HOM05D001318 ORTHO05D001152 9.7e-16 87.8 151 41.7
CSS0039754 Camellia sinensis var. sinensis HOM05D001318 ORTHO05D001152 9.7e-16 87.8 151 41.7
Nn1g01886 Nelumbo nucifera HOM05D001318 ORTHO05D001152 9.7e-16 87.8 156 35.9
CAN.G38.30 Capsicum annuum HOM05D001318 ORTHO05D001152 1.3e-15 87.4 154 37.7
MELO3C006031.2 Cucumis melo HOM05D000122 ORTHO05D001152 1.3e-15 87.4 137 40.9
Gohir.D12G115100 Gossypium hirsutum HOM05D001318 ORTHO05D001152 1.3e-15 87.4 131 41.2
Oeu008693.3 Olea europaea HOM05D001318 ORTHO05D001152 1.7e-15 87.0 127 41.7
Gorai.008G124700 Gossypium raimondii HOM05D001318 ORTHO05D001152 2.2e-15 86.7 131 41.2
Ciclev10020704m.g Citrus clementina HOM05D001318 ORTHO05D001152 2.8e-15 86.3 122 44.3
Nitab4.5_0000141g0200 Nicotiana tabacum HOM05D001318 ORTHO05D001152 3.7e-15 85.9 157 38.2
Potri.002G169900 Populus trichocarpa HOM05D001318 ORTHO05D001152 3.7e-15 85.9 127 42.5
BcaNung05605 Brassica carinata HOM05D001318 ORTHO05D001152 4.8e-15 85.5 163 38.0
Lj3g0015948 Lotus japonicus HOM05D001318 ORTHO05D001152 4.8e-15 85.5 134 41.8
CANSAT56G2581 Cannabis sativa HOM05D001318 ORTHO05D001152 6.3e-15 85.1 142 41.5
Cc11_g03600 Coffea canephora HOM05D001318 ORTHO05D001152 6.3e-15 85.1 142 43.0
Lalb_Chr17g0342521 Lupinus albus HOM05D001318 ORTHO05D001152 6.3e-15 85.1 150 37.3
Hund16705 Selenicereus undatus HOM05D001318 ORTHO05D001152 6.3e-15 85.1 158 39.2
Hund27205 Selenicereus undatus HOM05D001318 ORTHO05D001152 6.3e-15 85.1 157 39.5
Aa31LG1G27760 Aethionema arabicum HOM05D001318 ORTHO05D001152 8.2e-15 84.7 154 39.0
Lalb_Chr10g0100471 Lupinus albus HOM05D001318 ORTHO05D001152 8.2e-15 84.7 146 39.0
PSO170G4448 Papaver somniferum HOM05D001318 ORTHO05D001152 8.2e-15 84.7 127 40.9
Oeu043211.2 Olea europaea HOM05D001318 ORTHO05D001152 1.1e-14 84.3 149 41.6
Sopen05g003230 Solanum pennellii HOM05D001318 ORTHO05D001152 1.1e-14 84.3 153 39.2
Dinv18740 Davidia involucrata HOM05D001318 ORTHO05D001152 1.4e-14 84.0 122 42.6
Potri.014G097800 Populus trichocarpa HOM05D001318 ORTHO05D001152 1.4e-14 84.0 127 41.7
SGA_v2.0_scaffold5G03012 Striga asiatica HOM05D001318 ORTHO05D001152 1.4e-14 84.0 159 38.4
Ah.05g179700 Amaranthus hybridus HOM05D001318 ORTHO05D001152 1.8e-14 83.6 163 35.6
EL10Ac1g00287 Beta vulgaris HOM05D001318 ORTHO05D001152 1.8e-14 83.6 158 36.1
CARHR141700 Cardamine hirsuta HOM05D001318 ORTHO05D001152 1.8e-14 83.6 146 39.7
DCAR_006971 Daucus carota HOM05D001318 ORTHO05D001152 1.8e-14 83.6 144 41.0
Nitab4.5_0003566g0040 Nicotiana tabacum HOM05D001318 ORTHO05D001152 1.8e-14 83.6 168 35.7
Prupe.2G186600 Prunus persica HOM05D001318 ORTHO05D001152 1.8e-14 83.6 168 36.3
Sabra02G0142400 Salix brachista HOM05D001318 ORTHO05D001152 1.8e-14 83.6 126 39.7
Thhalv10001501m.g Eutrema salsugineum HOM05D001318 ORTHO05D001152 2.4e-14 83.2 162 37.0
Solyc05g007270.4 Solanum lycopersicum HOM05D001318 ORTHO05D001152 2.4e-14 83.2 160 38.1
MSTRG.4811 Avicennia marina HOM05D001318 ORTHO05D001152 3.1e-14 82.8 158 38.0
Carub.0004s2912 Capsella rubella HOM05D001318 ORTHO05D001152 3.1e-14 82.8 151 39.7
Gorai.004G152200 Gossypium raimondii HOM05D001318 ORTHO05D001152 3.1e-14 82.8 128 40.6
MD07G1148300 Malus domestica HOM05D001318 ORTHO05D001152 3.1e-14 82.8 154 40.3
Oeu007902.1 Olea europaea HOM05D001318 ORTHO05D001152 3.1e-14 82.8 150 39.3
CAN.G1207.5 Capsicum annuum HOM05D001318 ORTHO05D001152 4.1e-14 82.4 133 40.6
Gohir.D08G146600 Gossypium hirsutum HOM05D001318 ORTHO05D001152 4.1e-14 82.4 131 40.5
Sp4g28440 Schrenkiella parvula HOM05D001318 ORTHO05D001152 4.1e-14 82.4 163 37.4
THA.LOC104817346 Tarenaya hassleriana HOM05D001318 ORTHO05D001152 4.1e-14 82.4 150 38.7
Eucgr.D02368 Eucalyptus grandis HOM05D001318 ORTHO05D001152 5.3e-14 82.0 133 40.6
Sabra14G0071600 Salix brachista HOM05D001318 ORTHO05D001152 5.3e-14 82.0 127 41.7
AL4G45720 Arabidopsis lyrata HOM05D001318 ORTHO05D001152 6.9e-14 81.6 150 38.7
BcaC02g12531 Brassica carinata HOM05D001318 ORTHO05D001152 6.9e-14 81.6 134 41.8
A05p01350 Brassica napus HOM05D001318 ORTHO05D001152 6.9e-14 81.6 134 41.8
C04p01530 Brassica napus HOM05D001318 ORTHO05D001152 6.9e-14 81.6 134 41.8
BolC4t21804H Brassica oleracea HOM05D001318 ORTHO05D001152 6.9e-14 81.6 134 41.8
BraA05t19133Z Brassica rapa HOM05D001318 ORTHO05D001152 6.9e-14 81.6 134 41.8
Dinv32575 Davidia involucrata HOM05D001318 ORTHO05D001152 6.9e-14 81.6 137 40.9
Peaxi162Scf00026g03111 Petunia axillaris HOM05D001318 ORTHO05D001152 6.9e-14 81.6 152 38.2
GSVIVG01027086001 Vitis vinifera HOM05D001318 ORTHO05D001152 9.1e-14 81.3 143 39.2
MELO3C022309.2 Cucumis melo HOM05D001318 ORTHO05D001152 1.2e-13 80.9 132 39.4
Migut.B01856 Erythranthe guttata HOM05D001318 ORTHO05D001152 1.2e-13 80.9 158 36.7
RcHm_v2.0_Chr1g0359301 Rosa chinensis HOM05D001318 ORTHO05D001152 1.5e-13 80.5 138 42.0
Gohir.A08G125700 Gossypium hirsutum HOM05D001318 ORTHO05D001152 2.0e-13 80.1 131 38.9
Manes.06G158400 Manihot esculenta HOM05D001318 ORTHO05D001152 2.0e-13 80.1 148 39.9
Sed0019577 Sechium edule HOM05D001318 ORTHO05D001152 2.0e-13 80.1 132 40.2
AT2G46420 Arabidopsis thaliana HOM05D001318 ORTHO05D001152 2.6e-13 79.7 150 38.0
THA.LOC104802063 Tarenaya hassleriana HOM05D001318 ORTHO05D001152 3.4e-13 79.3 151 36.4
ClCG06G002210 Citrullus lanatus HOM05D001318 ORTHO05D001152 4.5e-13 79.0 122 40.2
CsaV3_6G008290 Cucumis sativus L. HOM05D001318 ORTHO05D001152 4.5e-13 79.0 132 37.9
AT3G61700 Arabidopsis thaliana HOM05D001318 ORTHO05D001152 5.9e-13 78.6 134 40.3
CARHR172010 Cardamine hirsuta HOM05D001318 ORTHO05D001152 5.9e-13 78.6 132 40.2
Gohir.A11G096700 Gossypium hirsutum HOM05D001318 ORTHO05D001152 5.9e-13 78.6 150 35.3
PGR031G2986 Punica granatum HOM05D001318 ORTHO05D001152 5.9e-13 78.6 122 43.4
ATR0188G015 Amborella trichopoda HOM05D001318 ORTHO05D001152 7.7e-13 78.2 159 33.3
HPP92_020020 Vanilla planifolia HOM05D001318 ORTHO05D001152 7.7e-13 78.2 127 38.6
Carub.0005s2845 Capsella rubella HOM05D001318 ORTHO05D001152 1.0e-12 77.8 132 39.4
PGR031G2052 Punica granatum HOM05D001318 ORTHO05D001152 1.0e-12 77.8 122 43.4
arahy.Tifrunner.gnm1.ann1.QCV352 Arachis hypogaea HOM05D001318 ORTHO05D001152 1.3e-12 77.4 129 38.8
Duzib133G0755 Durio zibethinus HOM05D001318 ORTHO05D001152 1.7e-12 77.0 131 38.9
Gohir.D11G101400 Gossypium hirsutum HOM05D001318 ORTHO05D001152 2.2e-12 76.6 150 34.7
Gorai.007G108000 Gossypium raimondii HOM05D001318 ORTHO05D001152 2.2e-12 76.6 150 34.7
TWI59G0130 Tripterygium wilfordii HOM05D001318 ORTHO05D001152 2.2e-12 76.6 153 34.6
CDE03G0264 Ceratophyllum demersum HOM05D001318 ORTHO05D001152 5.0e-12 75.5 129 38.0
arahy.Tifrunner.gnm1.ann1.BNGT2Q Arachis hypogaea HOM05D001318 ORTHO05D001152 6.5e-12 75.1 129 38.0
Haze_00125 Corylus avellana HOM05D001318 ORTHO05D001152 6.5e-12 75.1 134 38.8
Oeu019763.2 Olea europaea HOM05D001318 ORTHO05D001152 1.4e-11 73.9 136 38.2
Lj7A501G46 Lonicera japonica HOM05D001318 ORTHO05D001152 1.9e-11 73.6 134 41.8
Lalb_Chr17g0342621 Lupinus albus HOM05D001318 ORTHO05D001152 1.9e-11 73.6 130 37.7
unitig_736.g22812 Utricularia gibba HOM05D001318 ORTHO05D001152 1.9e-11 73.6 155 35.5
Migut.N01552 Erythranthe guttata HOM05D001318 ORTHO05D001152 2.5e-11 73.2 117 39.3
Oeu050738.1 Olea europaea HOM05D001318 ORTHO05D001152 2.5e-11 73.2 158 33.5
AL5G44210 Arabidopsis lyrata HOM05D001318 ORTHO05D001152 3.2e-11 72.8 139 38.8
unitig_62.g23798 Utricularia gibba HOM05D001318 ORTHO05D001152 3.2e-11 72.8 151 35.1
MSTRG.20899 Avicennia marina HOM05D001318 ORTHO05D001152 5.5e-11 72.0 132 37.1
MSTRG.28255 Avicennia marina HOM05D001318 ORTHO05D001152 5.5e-11 72.0 140 37.9
Thhalv10006433m.g Eutrema salsugineum HOM05D001318 ORTHO05D001152 7.2e-11 71.6 132 40.2
A09p53790 Brassica napus HOM05D001318 ORTHO05D001152 9.4e-11 71.2 130 36.9
MD01G1079500 Malus domestica HOM05D001318 ORTHO05D001152 1.2e-10 70.9 132 38.6
Ca_29804_v3 Cicer arietinum L. HOM05D001318 ORTHO05D001152 2.1e-10 70.1 102 47.1
Sp5g01690 Schrenkiella parvula HOM05D001318 ORTHO05D001152 2.7e-10 69.7 131 38.9
Aa31LG10G15700 Aethionema arabicum HOM05D001318 ORTHO05D001152 3.6e-10 69.3 120 41.7
BcaC07g42606 Brassica carinata HOM05D001318 ORTHO05D001152 1.8e-09 67.0 120 38.3
CiPaw.06G008300 Carya illinoinensis HOM05D001318 ORTHO05D001152 3.0e-09 66.2 117 36.8
Zm00001eb338770 Zea mays HOM05D001318 ORTHO05D001152 7.4e-08 61.6 126 34.9
QL04p058035 Quercus lobata HOM05D001318 ORTHO05D001152 9.7e-08 61.2 110 34.5
FAN04G1166 Fragaria x ananassa HOM05D001318 ORTHO05D001152 2.2e-07 60.1 89 43.8
SGA_v2.0_scaffold43G16369 Striga asiatica HOM05D001318 ORTHO05D001152 2.2e-07 60.1 133 34.6
FAN01G1017 Fragaria x ananassa HOM05D001318 ORTHO05D001152 2.8e-07 59.7 89 43.8
TWI14G1000 Tripterygium wilfordii HOM05D001318 ORTHO05D001152 6.3e-07 58.5 97 37.1
FAN25G1950 Fragaria x ananassa HOM05D001318 ORTHO05D001152 1.8e-06 57.0 98 40.8
BraA09t40797Z Brassica rapa HOM05D000751 ORTHO05D000889 2.4e-06 56.6 125 34.4
Peaxi162Scf00541g00633 Petunia axillaris HOM05D001318 ORTHO05D001152 3.1e-06 56.2 99 38.4
C08p36600 Brassica napus HOM05D001318 ORTHO05D001152 7.0e-06 55.1 131 32.1
BolC8t51243H Brassica oleracea HOM05D001318 ORTHO05D001152 7.0e-06 55.1 131 32.1
Duzib138G0066 Durio zibethinus HOM05D001318 ORTHO05D001152 9.1e-06 54.7 73 43.8


User provided reference genes

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