Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN01G1304 Fragaria x ananassa HOM05D007318 ORTHO05D009289 8.5e-232 806.6 397 100.0
FAN06G3353 Fragaria x ananassa HOM05D007318 ORTHO05D009289 1.4e-197 693.0 442 81.4
FvH4_7g05530 Fragaria vesca HOM05D007318 ORTHO05D009289 1.1e-162 577.0 283 98.9
RcHm_v2.0_Chr1g0332361 Rosa chinensis HOM05D007318 ORTHO05D009289 3.0e-136 489.2 267 86.5
MD02G1257000 Malus domestica HOM05D007318 ORTHO05D009289 2.0e-119 433.3 268 75.0
Dinv09616 Davidia involucrata HOM05D007318 ORTHO05D009289 1.7e-107 393.7 267 68.2
Prupe.2G075500 Prunus persica HOM05D007318 ORTHO05D009289 2.3e-107 393.3 229 80.8
Atru.chr12.1022 Acer truncatum HOM05D007318 ORTHO05D009289 1.9e-106 390.2 268 68.3
Ciclev10016201m.g Citrus clementina HOM05D007318 ORTHO05D009289 2.5e-106 389.8 272 66.2
Haze_02511 Corylus avellana HOM05D007318 ORTHO05D009289 3.0e-104 382.9 268 66.8
Gorai.005G019900 Gossypium raimondii HOM05D007318 ORTHO05D009289 5.2e-104 382.1 268 65.3
Gohir.D02G016400 Gossypium hirsutum HOM05D007318 ORTHO05D009289 6.8e-104 381.7 268 64.9
QL04p044887 Quercus lobata HOM05D007318 ORTHO05D009289 1.2e-103 380.9 268 69.0
CiPaw.14G032900 Carya illinoinensis HOM05D007318 ORTHO05D009289 7.5e-103 378.3 267 65.5
TWI63G0749 Tripterygium wilfordii HOM05D007318 ORTHO05D009289 2.8e-102 376.3 267 65.5
Sabra10G0186800 Salix brachista HOM05D007318 ORTHO05D009289 3.7e-102 375.9 267 63.7
CANSAT56G0802 Cannabis sativa HOM05D007318 ORTHO05D009289 4.9e-102 375.6 299 61.2
Eucgr.J00256 Eucalyptus grandis HOM05D007318 ORTHO05D009289 8.3e-102 374.8 268 65.3
Lj6g0015884 Lotus japonicus HOM05D007318 ORTHO05D009289 8.3e-102 374.8 268 65.3
COL.COLO4_33011 Corchorus olitorius HOM05D007318 ORTHO05D009289 1.8e-101 373.6 268 66.0
Manes.03G085100 Manihot esculenta HOM05D007318 ORTHO05D009289 5.4e-101 372.1 267 64.4
GSVIVG01001002001 Vitis vinifera HOM05D007318 ORTHO05D009289 3.5e-100 369.4 268 64.6
Duzib151G0977 Durio zibethinus HOM05D007318 ORTHO05D009289 5.9e-100 368.6 268 65.7
Actinidia18618 Actinidia chinensis HOM05D007318 ORTHO05D009289 2.3e-99 366.7 267 62.9
CSS0001089 Camellia sinensis var. sinensis HOM05D007318 ORTHO05D009289 2.3e-99 366.7 270 62.2
Rhsim03G0098000 Rhododendron simsii HOM05D007318 ORTHO05D009289 5.0e-99 365.5 267 62.5
DCAR_018980 Daucus carota HOM05D007318 ORTHO05D009289 8.6e-99 364.8 272 63.6
Glyma.15G117500 Glycine max HOM05D007318 ORTHO05D009289 8.6e-99 364.8 269 65.4
VMungo0720G2068 Vigna mungo HOM05D007318 ORTHO05D009289 1.9e-98 363.6 269 64.3
CSS0042589 Camellia sinensis var. sinensis HOM05D007318 ORTHO05D009289 2.5e-98 363.2 270 61.9
Nitab4.5_0001437g0020 Nicotiana tabacum HOM05D007318 ORTHO05D009289 4.3e-98 362.5 269 61.0
Sopen11g002850 Solanum pennellii HOM05D007318 ORTHO05D009289 5.6e-98 362.1 280 60.0
Phvul.007G242433 Phaseolus vulgaris HOM05D007318 ORTHO05D009289 4.7e-97 359.0 268 63.4
Lalb_Chr01g0010421 Lupinus albus HOM05D007318 ORTHO05D009289 8.0e-97 358.2 268 61.9
Oeu026589.2 Olea europaea HOM05D007318 ORTHO05D009289 1.0e-96 357.8 267 61.8
arahy.Tifrunner.gnm1.ann1.CJJ3HV Arachis hypogaea HOM05D007318 ORTHO05D009289 6.8e-96 355.1 279 60.6
arahy.Tifrunner.gnm1.ann1.CYVU5X Arachis hypogaea HOM05D007318 ORTHO05D009289 6.8e-96 355.1 279 60.6
arahy.Tifrunner.gnm1.ann1.PPG341 Arachis hypogaea HOM05D007318 ORTHO05D009289 6.8e-96 355.1 279 60.6
CAN.G645.12 Capsicum annuum HOM05D007318 ORTHO05D009289 2.0e-95 353.6 266 59.4
Nitab4.5_0011538g0040 Nicotiana tabacum HOM05D007318 ORTHO05D009289 2.0e-95 353.6 269 59.9
Nn7g37225 Nelumbo nucifera HOM05D007318 ORTHO05D009289 7.5e-95 351.7 267 61.0
SalBow6G3105 Salvia bowleyana HOM05D007318 ORTHO05D009289 9.8e-95 351.3 269 60.6
CsaV3_5G035390 Cucumis sativus L. HOM05D007318 ORTHO05D009289 6.4e-94 348.6 267 59.9
Migut.F01608 Erythranthe guttata HOM05D007318 ORTHO05D009289 1.1e-93 347.8 267 61.4
Peaxi162Scf00173g00322 Petunia axillaris HOM05D007318 ORTHO05D009289 1.4e-93 347.4 261 60.9
Sed0005914 Sechium edule HOM05D007318 ORTHO05D009289 4.1e-93 345.9 268 59.7
Cc02_g09660 Coffea canephora HOM05D007318 ORTHO05D009289 7.8e-92 341.7 267 59.2
ECA238G4459 Erigeron canadensis HOM05D007318 ORTHO05D009289 1.0e-91 341.3 268 58.6
Hund22276 Selenicereus undatus HOM05D007318 ORTHO05D009289 1.7e-91 340.5 269 59.9
TPR.G10614 Trifolium pratense HOM05D007318 ORTHO05D009289 2.3e-91 340.1 282 58.2
HanXRQChr07g0194021 Helianthus annuus HOM05D007318 ORTHO05D009289 2.5e-90 336.7 270 57.8
Medtr1g050425 Medicago truncatula HOM05D007318 ORTHO05D009289 2.1e-89 333.6 298 55.4
Ca_20265_v3 Cicer arietinum L. HOM05D007318 ORTHO05D009289 6.2e-89 332.0 290 55.9
MBI13_g32993_MAGBIO Magnolia biondii HOM05D007318 ORTHO05D009289 1.4e-88 330.9 271 56.1
MELO3C012351.2 Cucumis melo HOM05D007318 ORTHO05D009289 8.3e-86 321.6 281 55.2
SGA_v2.0_scaffold13G06456 Striga asiatica HOM05D007318 ORTHO05D009289 1.4e-85 320.9 267 58.4
Cpa.g.sc5.264 Carica papaya HOM05D007318 ORTHO05D009289 1.9e-85 320.5 230 65.2
Potri.010G238500 Populus trichocarpa HOM05D007318 ORTHO05D009289 1.0e-83 314.7 220 62.7
Lj2A32G32 Lonicera japonica HOM05D007318 ORTHO05D009289 8.6e-83 311.6 267 55.4
Psat2g020440 Pisum sativum HOM05D007318 ORTHO05D009289 1.9e-82 310.5 310 51.3
Aqoxy1G02117 Aquilegia oxysepala HOM05D007318 ORTHO05D009289 2.5e-82 310.1 280 55.0
Os11g0136500 Oryza sativa ssp. japonica HOM05D007318 ORTHO05D009289 1.2e-81 307.8 265 55.1
Lsat_1_v5_gn_2_104460 Lactuca sativa HOM05D007318 ORTHO05D009289 2.1e-81 307.0 275 54.9
unitig_0.g1560 Utricularia gibba HOM05D007318 ORTHO05D009289 1.4e-80 304.3 267 54.3
MBI13_g44214_MAGBIO Magnolia biondii HOM05D007318 ORTHO05D009289 1.8e-80 303.9 268 53.7
EL10Ac4g08684 Beta vulgaris HOM05D007318 ORTHO05D009289 2.3e-80 303.5 267 54.7
Solyc11g006930.3 Solanum lycopersicum HOM05D007318 ORTHO05D009289 5.2e-80 302.4 223 62.8
Zm00001eb196200 Zea mays HOM05D007318 ORTHO05D009289 1.5e-79 300.8 269 53.2
PGR044G0176 Punica granatum HOM05D007318 ORTHO05D009289 2.0e-79 300.4 220 63.2
PSO384G0062 Papaver somniferum HOM05D007318 ORTHO05D009289 4.4e-79 299.3 273 53.8
Os12g0133400 Oryza sativa ssp. japonica HOM05D007318 ORTHO05D009289 8.3e-78 295.0 265 52.8
Aqoxy1G02095 Aquilegia oxysepala HOM05D007318 ORTHO05D009289 7.1e-77 292.0 292 51.4
ClCG05G018410 Citrullus lanatus HOM05D007318 ORTHO05D009289 1.6e-76 290.8 268 53.4
Cfa011269 Carpinus fangiana HOM05D007318 ORTHO05D009289 6.2e-73 278.9 191 67.5
ATR1096G030 Amborella trichopoda HOM05D007318 ORTHO05D009289 2.9e-70 270.0 231 55.8
ClCG05G021760 Citrullus lanatus HOM05D007318 ORTHO05D009289 4.8e-65 252.7 188 61.7
TAR636G1683 Trochodendron aralioides HOM05D007318 ORTHO05D009289 5.8e-63 245.7 172 67.4
HPP92_018209 Vanilla planifolia HOM05D007318 ORTHO05D009289 1.1e-61 241.5 270 44.8
Thecc.03G070600 Theobroma cacao HOM05D007318 ORTHO05D009289 3.2e-61 240.0 160 70.6
AUR62043602 Chenopodium quinoa HOM05D007318 ORTHO05D009289 2.7e-60 236.9 324 42.9
AagrBONN_evm.TU.Sc2ySwM_368.1913 Anthoceros agrestis HOM05D007318 ORTHO05D009289 3.0e-59 233.4 274 46.0
Glyma.02G164100 Glycine max HOM05D007318 ORTHO05D009289 1.1e-58 231.5 175 64.6
AUR62042079 Chenopodium quinoa HOM05D007318 ORTHO05D009289 1.2e-55 221.5 181 58.6
Psat6g095000 Pisum sativum HOM05D007318 ORTHO05D009289 1.2e-55 221.5 269 44.2
Mapoly0020s0170 Marchantia polymorpha HOM05D007318 ORTHO05D009289 5.4e-53 212.6 272 40.8
MSTRG.421 Avicennia marina HOM05D007318 ORTHO05D009289 7.9e-52 208.8 166 59.0
Pp3c5_16220 Physcomitrium patens HOM05D007318 ORTHO05D009289 4.5e-47 193.0 238 45.8
SMO172G0015 Selaginella moellendorffii HOM05D007318 ORTHO05D009289 1.1e-45 188.3 242 43.8
ClCG00G005260 Citrullus lanatus HOM05D007318 ORTHO05D009289 5.5e-45 186.0 134 61.2
PRCOL_00002097 Prasinoderma coloniale HOM05D007318 ORTHO05D009289 7.1e-45 185.7 277 36.5
Gohir.A02G015000 Gossypium hirsutum HOM05D007318 ORTHO05D009289 1.6e-44 184.5 136 58.8
MBI13_g43865_MAGBIO Magnolia biondii HOM05D007318 ORTHO05D009289 1.8e-35 154.5 145 53.1
SEGI_17929 Sequoiadendron giganteum HOM05D007318 ORTHO05D009289 1.6e-33 147.9 130 59.2
Lsat_1_v5_gn_5_177140 Lactuca sativa HOM05D007318 ORTHO05D009289 4.8e-33 146.4 143 51.7
MCO07G233 Micromonas commoda HOM05D007318 ORTHO05D009289 1.7e-30 137.9 310 31.9
Dinv09612 Davidia involucrata HOM05D007318 ORTHO05D009289 4.1e-24 116.7 82 67.1
PGSC0003DMG400023973 Solanum tuberosum HOM05D007318 ORTHO05D009289 3.4e-23 113.6 79 64.6
SEGI_12071 Sequoiadendron giganteum HOM05D007318 ORTHO05D009289 1.5e-18 98.2 117 41.9
Cre07.g323750 Chlamydomonas reinhardtii HOM05D007318 ORTHO05D009289 9.7e-18 95.5 162 36.4
Glyma.20G074100 Glycine max HOM05D007318 ORTHO05D009289 5.5e-13 79.7 76 52.6
FAN10G1496 Fragaria x ananassa HOM05D007318 ORTHO05D009289 2.3e-11 74.3 34 100.0
Sc02g0000340 Simmondsia chinensis HOM05D005118 ORTHO05D006038 5.2e-11 73.2 295 24.7
TAR636G1493 Trochodendron aralioides HOM05D007318 ORTHO05D009289 1.5e-10 71.6 49 67.3
Lj6g0000477 Lotus japonicus HOM05D007318 ORTHO05D009289 2.6e-10 70.9 75 48.0
THA.LOC104816589 Tarenaya hassleriana HOM05D005118 ORTHO05D006038 8.2e-09 65.9 228 24.6
Peaxi162Scf00102g00213 Petunia axillaris HOM05D005118 ORTHO05D006038 1.1e-08 65.5 234 26.5
SalBow3G3316 Salvia bowleyana HOM05D005118 ORTHO05D006038 1.4e-08 65.1 226 25.2
CiPaw.09G015400 Carya illinoinensis HOM05D005118 ORTHO05D006038 1.8e-08 64.7 223 26.0
TAR365G0960 Trochodendron aralioides HOM05D005118 ORTHO05D006038 1.8e-08 64.7 222 26.6
CAN.G397.66 Capsicum annuum HOM05D005118 ORTHO05D006038 2.4e-08 64.3 244 23.4
Prupe.7G104300 Prunus persica HOM05D005118 ORTHO05D006038 2.4e-08 64.3 243 27.6
MD12G1027200 Malus domestica HOM05D005118 ORTHO05D006038 4.1e-08 63.5 242 24.8
unitig_748.g8118 Utricularia gibba HOM05D005118 ORTHO05D006038 5.3e-08 63.2 215 25.1
CARHR145210 Cardamine hirsuta HOM05D005118 ORTHO05D006038 7.0e-08 62.8 218 25.2
Solyc09g009960.3 Solanum lycopersicum HOM05D005118 ORTHO05D006038 1.2e-07 62.0 223 23.8
Migut.J01020 Erythranthe guttata HOM05D005118 ORTHO05D006038 1.6e-07 61.6 230 26.5
AUR62037021 Chenopodium quinoa HOM05D005118 ORTHO05D006038 2.0e-07 61.2 237 23.6
Nitab4.5_0001933g0040 Nicotiana tabacum HOM05D005118 ORTHO05D006038 2.6e-07 60.8 236 26.3
Dinv21195 Davidia involucrata HOM05D005118 ORTHO05D006038 4.5e-07 60.1 191 26.2
MBI13_g44208_MAGBIO Magnolia biondii HOM05D007318 ORTHO05D009289 4.5e-07 60.1 39 61.5
BraA05t22581Z Brassica rapa HOM05D005118 ORTHO05D006038 7.7e-07 59.3 215 24.7
PSO063G5626 Papaver somniferum HOM05D005118 ORTHO05D006038 1.0e-06 58.9 243 22.6
Sabra06G0162900 Salix brachista HOM05D005118 ORTHO05D006038 1.0e-06 58.9 243 24.3
FvH4_6g19140 Fragaria vesca HOM05D005118 ORTHO05D006038 1.3e-06 58.5 218 29.4
FAN14G1754 Fragaria x ananassa HOM05D005118 ORTHO05D006038 1.3e-06 58.5 218 29.4
SGA_v2.0_scaffold31G12903 Striga asiatica HOM05D005118 ORTHO05D006038 1.3e-06 58.5 182 26.4
FAN06G2418 Fragaria x ananassa HOM05D002543 ORTHO05D025511 1.7e-06 58.2 38 76.3
FAN13G2931 Fragaria x ananassa HOM05D016176 ORTHO05D203902 1.7e-06 58.2 42 69.0
Gorai.002G239100 Gossypium raimondii HOM05D005118 ORTHO05D006038 1.7e-06 58.2 244 25.4
DCAR_013399 Daucus carota HOM05D005118 ORTHO05D006038 2.2e-06 57.8 259 25.5
FAN02G2546 Fragaria x ananassa HOM05D005118 ORTHO05D006038 2.2e-06 57.8 219 26.9
ATR0618G287 Amborella trichopoda HOM05D005118 ORTHO05D006038 2.9e-06 57.4 213 23.9
FAN09G1525 Fragaria x ananassa HOM05D005118 ORTHO05D006038 2.9e-06 57.4 217 27.2
Lalb_Chr10g0096391 Lupinus albus HOM05D005118 ORTHO05D006038 2.9e-06 57.4 230 27.0
RcHm_v2.0_Chr3g0474251 Rosa chinensis HOM05D005118 ORTHO05D006038 2.9e-06 57.4 220 28.6
Thecc.05G091100 Theobroma cacao HOM05D005118 ORTHO05D006038 5.0e-06 56.6 244 24.2
Sopen09g004710 Solanum pennellii HOM05D005118 ORTHO05D006038 6.5e-06 56.2 224 24.1
Thhalv10021266m.g Eutrema salsugineum HOM05D005118 ORTHO05D006038 8.5e-06 55.8 201 25.4


User provided reference genes

Program Settings