Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN01G1241 Fragaria x ananassa HOM05D006780 ORTHO05D008455 9.8e-141 503.4 253 100.0
FvH4_7g33420 Fragaria vesca HOM05D006780 ORTHO05D008455 1.9e-139 499.2 253 99.2
FAN10G0287 Fragaria x ananassa HOM05D006780 ORTHO05D008455 1.7e-137 492.7 253 97.6
FAN10G2247 Fragaria x ananassa HOM05D006780 ORTHO05D008455 1.1e-136 490.0 253 97.2
FAN03G1919 Fragaria x ananassa HOM05D006780 ORTHO05D008455 4.3e-136 488.0 253 96.4
RcHm_v2.0_Chr1g0383391 Rosa chinensis HOM05D006780 ORTHO05D008455 8.1e-127 457.2 260 91.2
Prupe.2G322900 Prunus persica HOM05D006780 ORTHO05D008455 3.2e-99 365.5 257 76.3
MD07G1304300 Malus domestica HOM05D006780 ORTHO05D008455 3.1e-94 349.0 261 74.3
MD01G1232400 Malus domestica HOM05D006780 ORTHO05D008455 1.2e-93 347.1 262 72.9
QL09p026712 Quercus lobata HOM05D006780 ORTHO05D008455 2.9e-92 342.4 262 68.3
Cfa013613 Carpinus fangiana HOM05D006780 ORTHO05D008455 3.8e-92 342.0 223 75.8
Thecc.05G208000 Theobroma cacao HOM05D006780 ORTHO05D008455 3.8e-92 342.0 218 77.5
CANSAT21G1469 Cannabis sativa HOM05D006780 ORTHO05D008455 1.9e-91 339.7 229 73.8
Nn6g33682 Nelumbo nucifera HOM05D006780 ORTHO05D008455 2.5e-91 339.3 253 68.4
Gorai.012G029700 Gossypium raimondii HOM05D006780 ORTHO05D008455 1.2e-90 337.0 218 76.1
Gohir.A05G389500 Gossypium hirsutum HOM05D006780 ORTHO05D008455 2.7e-90 335.9 218 75.7
COL.COLO4_34143 Corchorus olitorius HOM05D006780 ORTHO05D008455 3.6e-90 335.5 218 76.1
Gohir.D04G027000 Gossypium hirsutum HOM05D006780 ORTHO05D008455 4.6e-90 335.1 218 75.7
Nitab4.5_0007683g0020 Nicotiana tabacum HOM05D006780 ORTHO05D008455 2.5e-88 329.3 245 66.9
Eucgr.K00108 Eucalyptus grandis HOM05D006780 ORTHO05D008455 3.3e-88 328.9 247 66.0
Lj3A891T47 Lonicera japonica HOM05D006780 ORTHO05D008455 5.7e-88 328.2 231 69.7
Nitab4.5_0000011g0110 Nicotiana tabacum HOM05D006780 ORTHO05D008455 5.7e-88 328.2 242 66.9
Solyc07g005550.4 Solanum lycopersicum HOM05D006780 ORTHO05D008455 1.3e-87 327.0 239 67.8
Atru.chr12.2100 Acer truncatum HOM05D006780 ORTHO05D008455 2.2e-87 326.2 223 72.6
CiPaw.08G043400 Carya illinoinensis HOM05D006780 ORTHO05D008455 2.2e-87 326.2 223 71.7
CSS0033689 Camellia sinensis var. sinensis HOM05D006780 ORTHO05D008455 2.8e-87 325.9 220 70.0
Hma1.2p1_0115F.1_g055870 Hydrangea macrophylla HOM05D006780 ORTHO05D008455 2.8e-87 325.9 217 72.4
Migut.F00963 Erythranthe guttata HOM05D006780 ORTHO05D008455 3.7e-87 325.5 232 69.0
Cc02_g00520 Coffea canephora HOM05D006780 ORTHO05D008455 6.3e-87 324.7 223 72.6
Sopen07g001650 Solanum pennellii HOM05D006780 ORTHO05D008455 6.3e-87 324.7 223 70.4
SalBow2G3389 Salvia bowleyana HOM05D006780 ORTHO05D008455 1.1e-86 323.9 249 65.1
Gorai.004G260300 Gossypium raimondii HOM05D006780 ORTHO05D008455 2.4e-86 322.8 218 72.5
SGA_v2.0_scaffold165G38216 Striga asiatica HOM05D006780 ORTHO05D008455 3.1e-86 322.4 231 68.8
HanXRQChr08g0225871 Helianthus annuus HOM05D006780 ORTHO05D008455 6.9e-86 321.2 236 67.8
Dinv29183 Davidia involucrata HOM05D006780 ORTHO05D008455 9.1e-86 320.9 258 65.5
Gohir.1Z049572 Gossypium hirsutum HOM05D006780 ORTHO05D008455 1.2e-85 320.5 218 72.0
TAR636G2448 Trochodendron aralioides HOM05D006780 ORTHO05D008455 1.2e-85 320.5 227 70.5
Lsat_1_v5_gn_8_3841 Lactuca sativa HOM05D006780 ORTHO05D008455 2.0e-85 319.7 251 66.1
PGR142G1227 Punica granatum HOM05D006780 ORTHO05D008455 7.7e-85 317.8 232 66.4
Ciclev10012613m.g Citrus clementina HOM05D006780 ORTHO05D008455 2.2e-84 316.2 226 66.8
Hund14300 Selenicereus undatus HOM05D006780 ORTHO05D008455 2.9e-84 315.8 247 62.8
MSTRG.17 Avicennia marina HOM05D006780 ORTHO05D008455 5.0e-84 315.1 218 69.7
Gohir.A08G223700 Gossypium hirsutum HOM05D006780 ORTHO05D008455 5.0e-84 315.1 218 71.1
Sc07g0007970 Simmondsia chinensis HOM05D006780 ORTHO05D008455 1.4e-83 313.5 253 63.6
Aqoxy3G02533 Aquilegia oxysepala HOM05D006780 ORTHO05D008455 3.2e-83 312.4 227 67.8
TAR629G2389 Trochodendron aralioides HOM05D006780 ORTHO05D008455 5.5e-83 311.6 226 67.3
arahy.Tifrunner.gnm1.ann1.T2A0GP Arachis hypogaea HOM05D006780 ORTHO05D008455 1.6e-82 310.1 256 62.9
arahy.Tifrunner.gnm1.ann1.T66758 Arachis hypogaea HOM05D006780 ORTHO05D008455 1.6e-82 310.1 256 62.9
Manes.09G119100 Manihot esculenta HOM05D006780 ORTHO05D008455 2.7e-82 309.3 255 64.3
Actinidia34294 Actinidia chinensis HOM05D006780 ORTHO05D008455 6.1e-82 308.1 244 62.3
GSVIVG01024468001 Vitis vinifera HOM05D006780 ORTHO05D008455 1.0e-81 307.4 217 69.6
TWI34G0276 Tripterygium wilfordii HOM05D006780 ORTHO05D008455 1.4e-81 307.0 218 71.1
unitig_52.g16857 Utricularia gibba HOM05D006780 ORTHO05D008455 2.3e-81 306.2 247 62.3
Actinidia08727 Actinidia chinensis HOM05D006780 ORTHO05D008455 5.1e-81 305.1 244 63.5
PSO063G3320 Papaver somniferum HOM05D006780 ORTHO05D008455 5.1e-81 305.1 220 66.8
CAN.G160.70 Capsicum annuum HOM05D006780 ORTHO05D008455 1.1e-80 303.9 227 64.8
THA.LOC104805709 Tarenaya hassleriana HOM05D006780 ORTHO05D008455 1.5e-80 303.5 225 67.6
AUR62030415 Chenopodium quinoa HOM05D006780 ORTHO05D008455 2.0e-80 303.1 219 64.4
Sabra04G0017100 Salix brachista HOM05D006780 ORTHO05D008455 2.0e-80 303.1 229 68.1
CiPaw.07G182200 Carya illinoinensis HOM05D006780 ORTHO05D008455 2.6e-80 302.8 203 73.9
PSO782G3414 Papaver somniferum HOM05D006780 ORTHO05D008455 2.6e-80 302.8 220 66.8
Potri.004G030100 Populus trichocarpa HOM05D006780 ORTHO05D008455 3.3e-80 302.4 230 67.8
Aa31LG2G2290 Aethionema arabicum HOM05D006780 ORTHO05D008455 1.7e-79 300.1 224 66.5
ClCG01G004850 Citrullus lanatus HOM05D006780 ORTHO05D008455 2.8e-79 299.3 247 62.3
TWI60G0503 Tripterygium wilfordii HOM05D006780 ORTHO05D008455 4.8e-79 298.5 257 61.5
ECA233G5194 Erigeron canadensis HOM05D006780 ORTHO05D008455 6.3e-79 298.1 204 73.0
Sed0025589 Sechium edule HOM05D006780 ORTHO05D008455 8.2e-79 297.7 249 60.2
AUR62010478 Chenopodium quinoa HOM05D006780 ORTHO05D008455 1.1e-78 297.4 227 62.1
VMungo1127G1066 Vigna mungo HOM05D006780 ORTHO05D008455 2.4e-78 296.2 197 70.6
PGSC0003DMG400011181 Solanum tuberosum HOM05D006780 ORTHO05D008455 4.1e-78 295.4 318 50.6
Ah.12g058490 Amaranthus hybridus HOM05D006780 ORTHO05D008455 6.9e-78 294.7 221 63.3
AT2G44870 Arabidopsis thaliana HOM05D006780 ORTHO05D008455 2.0e-77 293.1 236 63.1
Hma1.2p1_0115F.1_g055860 Hydrangea macrophylla HOM05D006780 ORTHO05D008455 2.0e-77 293.1 225 66.2
Peaxi162Scf00542g00012 Petunia axillaris HOM05D006780 ORTHO05D008455 7.7e-77 291.2 249 59.4
Thhalv10022468m.g Eutrema salsugineum HOM05D006780 ORTHO05D008455 2.2e-76 289.7 233 63.1
MELO3C005448.2 Cucumis melo HOM05D006780 ORTHO05D008455 2.9e-76 289.3 245 59.6
Lj3g0022672 Lotus japonicus HOM05D006780 ORTHO05D008455 1.4e-75 287.0 197 70.6
CsaV3_5G005070 Cucumis sativus L. HOM05D006780 ORTHO05D008455 2.5e-75 286.2 245 59.2
Phvul.011G002600 Phaseolus vulgaris HOM05D006780 ORTHO05D008455 3.2e-75 285.8 212 64.6
vmacro06481 Vaccinium macrocarpon HOM05D006780 ORTHO05D008455 5.5e-75 285.0 280 55.0
AL2G19830 Arabidopsis lyrata HOM05D006780 ORTHO05D008455 9.4e-75 284.3 224 64.3
vmacro10178 Vaccinium macrocarpon HOM05D006780 ORTHO05D008455 9.4e-75 284.3 264 54.5
Rhsim03G0219000 Rhododendron simsii HOM05D006780 ORTHO05D008455 1.2e-74 283.9 259 55.6
Sp5g19750 Schrenkiella parvula HOM05D006780 ORTHO05D008455 2.1e-74 283.1 232 61.6
Medtr4g033475 Medicago truncatula HOM05D006780 ORTHO05D008455 2.7e-74 282.7 196 70.4
BcaC03g14678 Brassica carinata HOM05D006780 ORTHO05D008455 6.1e-74 281.6 227 62.6
A02p13050 Brassica napus HOM05D006780 ORTHO05D008455 6.1e-74 281.6 227 62.6
BolC2t08258H Brassica oleracea HOM05D006780 ORTHO05D008455 6.1e-74 281.6 227 62.6
BraA02t06361Z Brassica rapa HOM05D006780 ORTHO05D008455 7.9e-74 281.2 263 56.7
CDE02G2736 Ceratophyllum demersum HOM05D006780 ORTHO05D008455 1.4e-73 280.4 216 61.6
DCAR_008997 Daucus carota HOM05D006780 ORTHO05D008455 6.7e-73 278.1 240 56.2
Glyma.12G002200 Glycine max HOM05D006780 ORTHO05D008455 8.8e-73 277.7 195 68.2
C02p21190 Brassica napus HOM05D006780 ORTHO05D008455 1.1e-72 277.3 227 61.7
Glyma.09G234600 Glycine max HOM05D006780 ORTHO05D008455 2.6e-72 276.2 195 67.7
BcaB05g24083 Brassica carinata HOM05D006780 ORTHO05D008455 9.7e-72 274.2 233 58.8
Rhsim09G0211500 Rhododendron simsii HOM05D006780 ORTHO05D008455 1.3e-71 273.9 293 50.2
Carub.0002s1056 Capsella rubella HOM05D006780 ORTHO05D008455 6.3e-71 271.6 225 60.9
TPR.G31925 Trifolium pratense HOM05D006780 ORTHO05D008455 4.1e-70 268.9 196 66.8
CDE11G0765 Ceratophyllum demersum HOM05D006780 ORTHO05D008455 5.3e-70 268.5 216 59.3
Ca_19681_v3 Cicer arietinum L. HOM05D006780 ORTHO05D008455 7.0e-70 268.1 197 66.0
Psat7g145160 Pisum sativum HOM05D006780 ORTHO05D008455 2.0e-69 266.5 196 66.3
EL10Ac5g12581 Beta vulgaris HOM05D006780 ORTHO05D008455 2.6e-69 266.2 280 50.0
Dinv17273 Davidia involucrata HOM05D006780 ORTHO05D008455 7.7e-69 264.6 165 73.9
CDE02G3388 Ceratophyllum demersum HOM05D006780 ORTHO05D008455 2.9e-68 262.7 216 57.4
CARHR056600 Cardamine hirsuta HOM05D006780 ORTHO05D008455 2.7e-66 256.1 228 57.9
Duzib128G1164 Durio zibethinus HOM05D006780 ORTHO05D008455 1.2e-64 250.8 229 58.5
Zm00001eb024190 Zea mays HOM05D006780 ORTHO05D008455 1.7e-63 246.9 229 54.6
Duzib177G1050 Durio zibethinus HOM05D006780 ORTHO05D008455 6.3e-63 245.0 218 59.2
CDE11G0053 Ceratophyllum demersum HOM05D006780 ORTHO05D008455 8.0e-58 228.0 216 50.9
HPP92_025668 Vanilla planifolia HOM05D006780 ORTHO05D008455 7.5e-56 221.5 226 51.8
ATR0829G223 Amborella trichopoda HOM05D006780 ORTHO05D008455 6.3e-55 218.4 234 50.4
Cpa.g.sc39.45 Carica papaya HOM05D006780 ORTHO05D008455 4.3e-43 179.1 120 70.8
SMO301G0031 Selaginella moellendorffii HOM05D006780 ORTHO05D008455 1.7e-36 157.1 187 41.7
Pp3c8_4270 Physcomitrium patens HOM05D006780 ORTHO05D008455 6.2e-34 148.7 209 34.0
Mapoly0133s0055 Marchantia polymorpha HOM05D006780 ORTHO05D008455 2.3e-28 130.2 150 40.7
CSS0031860 Camellia sinensis var. sinensis HOM05D001955 ORTHO05D001917 2.2e-23 113.6 74 71.6
CBR_g642 Chara braunii HOM05D006780 ORTHO05D008455 1.2e-21 107.8 195 33.8
Os10g0569000 Oryza sativa ssp. japonica HOM05D006780 ORTHO05D008455 4.4e-16 89.4 88 52.3


User provided reference genes

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