Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN01G1204 Fragaria x ananassa HOM05D003607 ORTHO05D004049 4.7e-103 377.9 192 100.0
FAN09G3360 Fragaria x ananassa HOM05D003607 ORTHO05D004049 2.2e-84 315.8 169 95.3
FAN14G5030 Fragaria x ananassa HOM05D003607 ORTHO05D004049 1.1e-83 313.5 169 94.1
FAN05G4077 Fragaria x ananassa HOM05D003607 ORTHO05D004049 3.5e-82 308.5 169 94.1
FAN05G2511 Fragaria x ananassa HOM05D003607 ORTHO05D004049 1.0e-81 307.0 169 93.5
FAN02G1747 Fragaria x ananassa HOM05D003607 ORTHO05D004049 1.8e-81 306.2 170 92.9
RcHm_v2.0_Chr3g0472991 Rosa chinensis HOM05D003607 ORTHO05D004049 3.9e-81 305.1 169 92.9
Prupe.7G112800 Prunus persica HOM05D003607 ORTHO05D004049 1.0e-73 280.4 183 82.5
MD14G1020900 Malus domestica HOM05D003607 ORTHO05D004049 2.5e-72 275.8 170 85.9
MD12G1023700 Malus domestica HOM05D003607 ORTHO05D004049 1.6e-71 273.1 170 84.1
RcHm_v2.0_Chr3g0491231 Rosa chinensis HOM05D003607 ORTHO05D004049 4.9e-68 261.5 168 79.2
CiPaw.10G008300 Carya illinoinensis HOM05D003607 ORTHO05D004049 4.6e-66 255.0 169 75.7
Haze_19593 Corylus avellana HOM05D003607 ORTHO05D004049 6.0e-66 254.6 184 73.9
CANSAT80G1935 Cannabis sativa HOM05D003607 ORTHO05D004049 7.9e-66 254.2 183 74.3
FAN19G1909 Fragaria x ananassa HOM05D003607 ORTHO05D004049 1.8e-65 253.1 169 76.3
Cfa016592 Carpinus fangiana HOM05D003607 ORTHO05D004049 2.3e-65 252.7 184 72.8
Manes.09G056401 Manihot esculenta HOM05D003607 ORTHO05D004049 2.3e-65 252.7 170 75.3
CiPaw.09G012700 Carya illinoinensis HOM05D003607 ORTHO05D004049 3.0e-65 252.3 169 78.1
QL07p039292 Quercus lobata HOM05D003607 ORTHO05D004049 3.0e-65 252.3 181 73.5
FAN26G0628 Fragaria x ananassa HOM05D003607 ORTHO05D004049 3.9e-65 251.9 169 75.7
FAN23G0012 Fragaria x ananassa HOM05D003607 ORTHO05D004049 6.7e-65 251.1 169 75.7
Sed0018362 Sechium edule HOM05D003607 ORTHO05D004049 6.3e-63 244.6 168 78.0
Cpa.g.sc5.37 Carica papaya HOM05D003607 ORTHO05D004049 8.2e-63 244.2 184 72.3
Sabra04G0127600 Salix brachista HOM05D003607 ORTHO05D004049 1.5e-61 240.0 165 73.9
Thhalv10017131m.g Eutrema salsugineum HOM05D003607 ORTHO05D004049 3.4e-61 238.8 172 75.0
Potri.004G190800 Populus trichocarpa HOM05D003607 ORTHO05D004049 3.4e-61 238.8 165 75.2
AT2G36300 Arabidopsis thaliana HOM05D003607 ORTHO05D004049 5.9e-61 238.0 172 75.0
Potri.009G152600 Populus trichocarpa HOM05D003607 ORTHO05D004049 5.9e-61 238.0 165 73.3
THA.LOC104823483 Tarenaya hassleriana HOM05D003607 ORTHO05D004049 7.6e-61 237.7 172 72.7
AL4G32410 Arabidopsis lyrata HOM05D003607 ORTHO05D004049 1.0e-60 237.3 172 75.0
THA.LOC104804679 Tarenaya hassleriana HOM05D003607 ORTHO05D004049 2.9e-60 235.7 173 72.3
Sabra09G0120500 Salix brachista HOM05D003607 ORTHO05D004049 5.0e-60 235.0 183 66.1
Sp4g18520 Schrenkiella parvula HOM05D003607 ORTHO05D004049 5.0e-60 235.0 171 72.5
Duzib093G0509 Durio zibethinus HOM05D003607 ORTHO05D004049 8.5e-60 234.2 186 69.9
Ciclev10012570m.g Citrus clementina HOM05D003607 ORTHO05D004049 1.4e-59 233.4 182 67.6
TWI74G0563 Tripterygium wilfordii HOM05D003607 ORTHO05D004049 2.5e-59 232.6 166 73.5
Manes.08G024200 Manihot esculenta HOM05D003607 ORTHO05D004049 3.2e-59 232.3 170 69.4
C04p11820 Brassica napus HOM05D003607 ORTHO05D004049 4.2e-59 231.9 173 71.7
BolC4t22831H Brassica oleracea HOM05D003607 ORTHO05D004049 4.2e-59 231.9 173 71.7
Duzib106G1766 Durio zibethinus HOM05D000444 ORTHO05D004049 5.5e-59 231.5 188 69.7
Sed0001726 Sechium edule HOM05D003607 ORTHO05D004049 7.2e-59 231.1 167 74.3
A05p09560 Brassica napus HOM05D003607 ORTHO05D004049 9.4e-59 230.7 173 71.1
BraA05t19909Z Brassica rapa HOM05D003607 ORTHO05D004049 9.4e-59 230.7 173 71.1
CARHR162640 Cardamine hirsuta HOM05D003607 ORTHO05D004049 2.1e-58 229.6 176 69.3
Thecc.05G087200 Theobroma cacao HOM05D003607 ORTHO05D004049 2.7e-58 229.2 188 70.2
Aa31LG5G21430 Aethionema arabicum HOM05D003607 ORTHO05D004049 3.6e-58 228.8 187 66.8
Duzib128G1249 Durio zibethinus HOM05D003607 ORTHO05D004049 3.6e-58 228.8 185 69.2
PGR004G0926 Punica granatum HOM05D003607 ORTHO05D004049 4.6e-58 228.4 182 68.7
Sp5g09570 Schrenkiella parvula HOM05D003607 ORTHO05D004049 6.1e-58 228.0 177 71.2
Atru.chr8.1565 Acer truncatum HOM05D003607 ORTHO05D004049 7.9e-58 227.6 182 65.9
arahy.Tifrunner.gnm1.ann1.0UXM82 Arachis hypogaea HOM05D003607 ORTHO05D004049 1.0e-57 227.3 164 73.2
arahy.Tifrunner.gnm1.ann1.66EI83 Arachis hypogaea HOM05D003607 ORTHO05D004049 1.4e-57 226.9 164 73.2
BcaB02g09364 Brassica carinata HOM05D003607 ORTHO05D004049 1.8e-57 226.5 172 69.2
CARHR130570 Cardamine hirsuta HOM05D003607 ORTHO05D004049 1.8e-57 226.5 172 70.9
TWI53G1341 Tripterygium wilfordii HOM05D003607 ORTHO05D004049 1.8e-57 226.5 169 70.4
BcaC02g11742 Brassica carinata HOM05D003607 ORTHO05D004049 2.3e-57 226.1 174 70.1
Gohir.A01G207100 Gossypium hirsutum HOM05D003607 ORTHO05D004049 2.3e-57 226.1 186 68.8
Carub.0004s1805 Capsella rubella HOM05D003607 ORTHO05D004049 3.9e-57 225.3 171 69.6
COL.COLO4_29767 Corchorus olitorius HOM05D003607 ORTHO05D004049 6.7e-57 224.6 184 68.5
MELO3C009463.2 Cucumis melo HOM05D003607 ORTHO05D004049 6.7e-57 224.6 168 73.2
CsaV3_3G037170 Cucumis sativus L. HOM05D003607 ORTHO05D004049 6.7e-57 224.6 168 73.2
ClCG10G019070 Citrullus lanatus HOM05D003607 ORTHO05D004049 8.8e-57 224.2 168 73.2
AT3G52760 Arabidopsis thaliana HOM05D003607 ORTHO05D004049 1.1e-56 223.8 173 68.8
Thhalv10010984m.g Eutrema salsugineum HOM05D003607 ORTHO05D004049 1.1e-56 223.8 171 68.4
Glyma.03G194400 Glycine max HOM05D003607 ORTHO05D004049 1.1e-56 223.8 163 73.0
Glyma.19G194200 Glycine max HOM05D003607 ORTHO05D004049 1.1e-56 223.8 163 73.0
Gohir.D01G196500 Gossypium hirsutum HOM05D003607 ORTHO05D004049 9.7e-56 220.7 186 67.7
Gorai.002G240700 Gossypium raimondii HOM05D003607 ORTHO05D004049 2.2e-55 219.5 186 67.2
VMungo1383G3486 Vigna mungo HOM05D003607 ORTHO05D004049 2.8e-55 219.2 163 71.8
Ca_08996_v3 Cicer arietinum L. HOM05D003607 ORTHO05D004049 4.8e-55 218.4 164 70.7
Carub.0005s1924 Capsella rubella HOM05D003607 ORTHO05D004049 6.3e-55 218.0 172 69.8
Gohir.A01G138500 Gossypium hirsutum HOM05D003607 ORTHO05D004049 6.3e-55 218.0 172 69.2
Lalb_Chr01g0018221 Lupinus albus HOM05D003607 ORTHO05D004049 6.3e-55 218.0 162 71.6
Phvul.001G189100 Phaseolus vulgaris HOM05D003607 ORTHO05D004049 8.2e-55 217.6 162 71.0
Psat3g033800 Pisum sativum HOM05D003607 ORTHO05D004049 1.4e-54 216.9 164 70.7
AL5G33530 Arabidopsis lyrata HOM05D003607 ORTHO05D004049 1.8e-54 216.5 173 66.5
Medtr7g104430 Medicago truncatula HOM05D003607 ORTHO05D004049 4.1e-54 215.3 165 70.9
TPR.G19550 Trifolium pratense HOM05D003607 ORTHO05D004049 9.1e-54 214.2 164 69.5
Gohir.D01G128200 Gossypium hirsutum HOM05D003607 ORTHO05D004049 2.0e-53 213.0 172 68.0
Gorai.002G158800 Gossypium raimondii HOM05D003607 ORTHO05D004049 2.0e-53 213.0 172 68.0
Lj1g0001702 Lotus japonicus HOM05D003607 ORTHO05D004049 5.9e-53 211.5 162 68.5
BcaC02g07616 Brassica carinata HOM05D003607 ORTHO05D004049 1.3e-52 210.3 166 67.5
BolC4t28008H Brassica oleracea HOM05D003607 ORTHO05D004049 1.3e-52 210.3 166 67.5
GSVIVG01033828001 Vitis vinifera HOM05D003607 ORTHO05D004049 3.8e-52 208.8 165 70.3
TAR633G2199 Trochodendron aralioides HOM05D003607 ORTHO05D004049 2.3e-49 199.5 183 60.1
BcaB06g28927 Brassica carinata HOM05D003607 ORTHO05D004049 3.9e-49 198.7 164 65.2
Lalb_Chr25g0288381 Lupinus albus HOM05D003607 ORTHO05D004049 1.1e-48 197.2 149 71.8
TAR369G0187 Trochodendron aralioides HOM05D003607 ORTHO05D004049 1.1e-48 197.2 170 62.4
Lj7A388T89 Lonicera japonica HOM05D003607 ORTHO05D004049 2.0e-48 196.4 183 61.2
TAR623G0614 Trochodendron aralioides HOM05D003607 ORTHO05D004049 4.4e-48 195.3 169 60.9
Lsat_1_v5_gn_0_7620 Lactuca sativa HOM05D003607 ORTHO05D004049 2.2e-47 193.0 183 59.0
HanXRQChr08g0217791 Helianthus annuus HOM05D003607 ORTHO05D004049 3.7e-47 192.2 182 57.7
Lsat_1_v5_gn_8_23940 Lactuca sativa HOM05D003607 ORTHO05D004049 1.1e-46 190.7 183 59.0
Rhsim09G0142700 Rhododendron simsii HOM05D003607 ORTHO05D004049 1.1e-46 190.7 188 55.3
Actinidia31103 Actinidia chinensis HOM05D003607 ORTHO05D004049 1.4e-46 190.3 169 58.6
CSS0005550 Camellia sinensis var. sinensis HOM05D003607 ORTHO05D004049 1.4e-46 190.3 184 57.6
CSS0036632 Camellia sinensis var. sinensis HOM05D003607 ORTHO05D004049 1.4e-46 190.3 184 57.6
CAN.G1513.4 Capsicum annuum HOM05D003607 ORTHO05D004049 1.8e-46 189.9 184 58.7
Nitab4.5_0012135g0010 Nicotiana tabacum HOM05D003607 ORTHO05D004049 1.8e-46 189.9 183 57.4
Oeu025590.1 Olea europaea HOM05D003607 ORTHO05D004049 1.8e-46 189.9 183 57.9
DCAR_032378 Daucus carota HOM05D003607 ORTHO05D004049 3.1e-46 189.1 182 59.3
Migut.F00909 Erythranthe guttata HOM05D003607 ORTHO05D004049 7.0e-46 188.0 171 57.3
Nitab4.5_0001437g0160 Nicotiana tabacum HOM05D003607 ORTHO05D004049 7.0e-46 188.0 170 58.8
DCAR_013922 Daucus carota HOM05D003607 ORTHO05D004049 9.1e-46 187.6 182 58.8
Hma1.2p1_0802F.1_g220470 Hydrangea macrophylla HOM05D003607 ORTHO05D004049 9.1e-46 187.6 169 58.0
Solyc11g007080.1 Solanum lycopersicum HOM05D003607 ORTHO05D004049 9.1e-46 187.6 184 57.6
MSTRG.9085 Avicennia marina HOM05D003607 ORTHO05D004049 1.5e-45 186.8 184 57.1
CSS0022022 Camellia sinensis var. sinensis HOM05D003607 ORTHO05D004049 1.5e-45 186.8 183 56.3
Actinidia34719 Actinidia chinensis HOM05D003607 ORTHO05D004049 2.0e-45 186.4 169 58.6
Sopen11g003000 Solanum pennellii HOM05D003607 ORTHO05D004049 3.4e-45 185.7 184 57.1
PGSC0003DMG400019486 Solanum tuberosum HOM05D003607 ORTHO05D004049 3.4e-45 185.7 184 56.0
MSTRG.27534 Avicennia marina HOM05D003607 ORTHO05D004049 5.9e-45 184.9 171 57.9
vmacro10304 Vaccinium macrocarpon HOM05D003607 ORTHO05D004049 5.9e-45 184.9 187 55.6
MBI01_g04060_MAGBIO Magnolia biondii HOM05D003607 ORTHO05D004049 7.7e-45 184.5 169 57.4
Peaxi162Scf00173g00511 Petunia axillaris HOM05D003607 ORTHO05D004049 7.7e-45 184.5 183 55.7
Lj4C706T9 Lonicera japonica HOM05D003607 ORTHO05D004049 1.3e-44 183.7 185 57.8
Oeu036840.1 Olea europaea HOM05D003607 ORTHO05D004049 1.7e-44 183.3 163 57.1
Rhsim07G0211000 Rhododendron simsii HOM05D003607 ORTHO05D004049 1.7e-44 183.3 189 55.6
Cc02_g09790 Coffea canephora HOM05D003607 ORTHO05D004049 3.8e-44 182.2 183 56.3
Solyc05g055300.1 Solanum lycopersicum HOM05D003607 ORTHO05D004049 6.5e-44 181.4 175 58.9
Sopen05g033740 Solanum pennellii HOM05D003607 ORTHO05D004049 6.5e-44 181.4 175 58.9
PSO675G0532 Papaver somniferum HOM05D003607 ORTHO05D004049 8.5e-44 181.0 186 55.9
PSO761G0544 Papaver somniferum HOM05D003607 ORTHO05D004049 1.9e-43 179.9 186 54.8
PSO210G3326 Papaver somniferum HOM05D003607 ORTHO05D004049 5.5e-43 178.3 186 54.8
SGA_v2.0_scaffold62G21343 Striga asiatica HOM05D003607 ORTHO05D004049 5.5e-43 178.3 165 57.0
Cpa.g.sc183.9 Carica papaya HOM05D003607 ORTHO05D004049 7.2e-43 177.9 169 58.6
PGSC0003DMG400023389 Solanum tuberosum HOM05D003607 ORTHO05D004049 9.4e-43 177.6 175 57.7
Eucgr.A01507 Eucalyptus grandis HOM05D003607 ORTHO05D004049 1.2e-42 177.2 122 73.8
PSO541G0274 Papaver somniferum HOM05D003607 ORTHO05D004049 4.7e-42 175.3 185 53.5
CDE06G0188 Ceratophyllum demersum HOM05D003607 ORTHO05D004049 1.4e-41 173.7 171 55.6
Aqoxy4G02802 Aquilegia oxysepala HOM05D003607 ORTHO05D004049 3.9e-41 172.2 177 55.4
FAN04G1633 Fragaria x ananassa HOM05D003607 ORTHO05D004049 3.9e-41 172.2 111 78.4
SGA_v2.0_scaffold13G06486 Striga asiatica HOM05D001901 ORTHO05D004049 3.9e-41 172.2 165 55.2
DCAR_013921 Daucus carota HOM05D003607 ORTHO05D004049 6.7e-41 171.4 170 59.4
PSO339G5446 Papaver somniferum HOM05D003607 ORTHO05D004049 1.1e-40 170.6 170 55.9
Sc02g0000900 Simmondsia chinensis HOM05D003607 ORTHO05D004049 1.5e-40 170.2 183 54.6
PSO384G4166 Papaver somniferum HOM05D003607 ORTHO05D004049 2.0e-40 169.9 170 57.1
EL10Ac6g14511 Beta vulgaris HOM05D003607 ORTHO05D004049 9.7e-40 167.5 178 52.8
CSS0022860 Camellia sinensis var. sinensis HOM05D003607 ORTHO05D004049 9.7e-40 167.5 183 53.0
TWI63G0764 Tripterygium wilfordii HOM05D003607 ORTHO05D004049 2.2e-39 166.4 182 53.3
HPP92_012048 Vanilla planifolia HOM05D003607 ORTHO05D004049 4.8e-39 165.2 170 55.3
SalBow6G2765 Salvia bowleyana HOM05D003607 ORTHO05D004049 2.4e-38 162.9 163 55.8
Lalb_Chr01g0010411 Lupinus albus HOM05D003607 ORTHO05D004049 5.3e-38 161.8 183 55.2
Zm00001eb013300 Zea mays HOM05D003607 ORTHO05D004049 5.3e-38 161.8 173 54.9
DCAR_028954 Daucus carota HOM05D003607 ORTHO05D004049 9.1e-38 161.0 183 51.4
Sc20g0001180 Simmondsia chinensis HOM05D003607 ORTHO05D004049 1.6e-37 160.2 169 52.1
Os03g0289200 Oryza sativa ssp. japonica HOM05D003607 ORTHO05D004049 3.5e-37 159.1 172 54.7
Zm00001eb397070 Zea mays HOM05D003607 ORTHO05D004049 3.5e-37 159.1 173 54.3
EL10Ac3g06213 Beta vulgaris HOM05D003607 ORTHO05D004049 7.7e-37 157.9 177 49.7
Dinv11849 Davidia involucrata HOM05D003607 ORTHO05D004049 6.5e-36 154.8 169 54.4
FAN14G1813 Fragaria x ananassa HOM05D003607 ORTHO05D004049 1.5e-35 153.7 101 81.2
CDE08G0948 Ceratophyllum demersum HOM05D003607 ORTHO05D004049 7.2e-35 151.4 143 59.4
unitig_748.g8775 Utricularia gibba HOM05D003607 ORTHO05D004049 3.6e-34 149.1 168 53.0
AUR62044160 Chenopodium quinoa HOM05D003607 ORTHO05D004049 8.8e-33 144.4 144 55.6
Psat5g022640 Pisum sativum HOM05D003607 ORTHO05D004049 1.5e-32 143.7 181 49.2
Migut.F01614 Erythranthe guttata HOM05D003607 ORTHO05D004049 3.7e-31 139.0 143 54.5
Dinv09603 Davidia involucrata HOM05D003607 ORTHO05D004049 4.1e-30 135.6 135 57.8
Nitab4.5_0001027g0170 Nicotiana tabacum HOM05D003607 ORTHO05D004049 1.6e-29 133.7 136 58.1
FvH4_6g27040 Fragaria vesca HOM05D003607 ORTHO05D004049 2.9e-28 129.4 83 79.5
Nitab4.5_0002662g0040 Nicotiana tabacum HOM05D003607 ORTHO05D004049 3.8e-28 129.0 136 56.6
SEGI_31078 Sequoiadendron giganteum HOM05D003607 ORTHO05D004049 8.5e-28 127.9 170 47.6
HanXRQChr17g0570591 Helianthus annuus HOM05D003607 ORTHO05D004049 1.9e-27 126.7 124 55.6
CDE11G0953 Ceratophyllum demersum HOM05D003607 ORTHO05D004049 3.2e-27 125.9 169 45.0
Oeu036839.1 Olea europaea HOM05D003607 ORTHO05D004049 2.7e-26 122.9 117 54.7
Pp3c18_15780 Physcomitrium patens HOM05D003607 ORTHO05D004049 2.7e-26 122.9 127 50.4
Pp3c18_15783 Physcomitrium patens HOM05D003607 ORTHO05D004049 2.7e-26 122.9 127 50.4
ATR0605G137 Amborella trichopoda HOM05D003607 ORTHO05D004049 4.7e-26 122.1 182 41.2
Pp3c11_15860 Physcomitrium patens HOM05D003607 ORTHO05D004049 3.0e-25 119.4 156 45.5
CiPaw.13G038900 Carya illinoinensis HOM05D003607 ORTHO05D004049 4.0e-25 119.0 142 47.9
Mapoly0150s0018 Marchantia polymorpha HOM05D003607 ORTHO05D004049 3.7e-23 112.5 144 47.2
Pp3c21_5540 Physcomitrium patens HOM05D003607 ORTHO05D004049 1.6e-21 107.1 97 53.6
Lj3P931T18 Lonicera japonica HOM05D003607 ORTHO05D004049 3.5e-21 105.9 106 54.7
SMO351G0616 Selaginella moellendorffii HOM05D003607 ORTHO05D004049 5.9e-21 105.1 135 49.6
AagrBONN_evm.TU.Sc2ySwM_228.2374 Anthoceros agrestis HOM05D003607 ORTHO05D004049 2.9e-20 102.8 127 44.9
DCAR_032379 Daucus carota HOM05D003607 ORTHO05D004049 1.0e-17 94.4 82 59.8
SalBow2G0328 Salvia bowleyana HOM05D003607 ORTHO05D004049 2.6e-16 89.7 104 53.8
CBR_g2958 Chara braunii HOM05D003607 ORTHO05D004049 1.3e-15 87.4 130 43.8
CBR_g10857 Chara braunii HOM05D003607 ORTHO05D004049 1.3e-12 77.4 159 37.7
PRCOL_00002835 Prasinoderma coloniale HOM05D003607 ORTHO05D004049 2.3e-12 76.6 171 35.1
FAN04G0747 Fragaria x ananassa HOM05D003607 ORTHO05D004049 8.0e-10 68.2 48 72.9
FAN28G1779 Fragaria x ananassa HOM05D003607 ORTHO05D004049 8.0e-10 68.2 48 72.9
MCO11G705 Micromonas commoda HOM05D003607 ORTHO05D004049 1.8e-09 67.0 84 41.7
Cfa026672 Carpinus fangiana HOM05D003607 ORTHO05D004049 1.5e-08 63.9 162 32.7
Phvul.004G098394 Phaseolus vulgaris HOM05D003607 ORTHO05D004049 2.0e-08 63.5 54 61.1
Cre09.g402650 Chlamydomonas reinhardtii HOM05D003607 ORTHO05D004049 4.4e-08 62.4 85 42.4


User provided reference genes

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