Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN01G1197 Fragaria x ananassa HOM05D005285 ORTHO05D006829 1.2e-208 729.6 355 100.0
FAN03G1002 Fragaria x ananassa HOM05D005285 ORTHO05D006829 2.7e-205 718.4 359 97.8
FvH4_7g00610 Fragaria vesca HOM05D005285 ORTHO05D006829 4.7e-205 717.6 355 98.9
FAN06G0391 Fragaria x ananassa HOM05D005285 ORTHO05D006829 3.0e-204 714.9 355 98.3
FAN10G3755 Fragaria x ananassa HOM05D005285 ORTHO05D006829 6.7e-204 713.8 355 98.3
FAN01G1198 Fragaria x ananassa HOM05D005285 ORTHO05D006829 1.2e-195 686.4 446 78.9
RcHm_v2.0_Chr1g0314801 Rosa chinensis HOM05D005285 ORTHO05D006829 5.3e-193 677.6 355 93.0
MD07G1005600 Malus domestica HOM05D005285 ORTHO05D006829 7.5e-179 630.6 351 86.3
MD02G1316300 Malus domestica HOM05D005285 ORTHO05D006829 1.4e-177 626.3 351 86.3
Dinv09380 Davidia involucrata HOM05D005285 ORTHO05D006829 1.6e-176 622.9 363 82.4
CSS0013341 Camellia sinensis var. sinensis HOM05D005285 ORTHO05D006829 8.6e-175 617.1 365 81.1
Gohir.A08G026900 Gossypium hirsutum HOM05D005285 ORTHO05D006829 2.5e-174 615.5 362 82.9
Actinidia20684 Actinidia chinensis HOM05D005285 ORTHO05D006829 4.3e-174 614.8 364 81.0
Peaxi162Scf00042g00510 Petunia axillaris HOM05D005285 ORTHO05D006829 4.3e-174 614.8 356 82.3
CANSAT21G0587 Cannabis sativa HOM05D005285 ORTHO05D006829 7.3e-174 614.0 349 83.4
Thecc.01G414500 Theobroma cacao HOM05D005285 ORTHO05D006829 7.3e-174 614.0 360 82.2
Gorai.004G035700 Gossypium raimondii HOM05D005285 ORTHO05D006829 1.6e-173 612.8 362 82.6
PGR044G0372 Punica granatum HOM05D005285 ORTHO05D006829 1.6e-173 612.8 364 81.0
TAR636G1692 Trochodendron aralioides HOM05D005285 ORTHO05D006829 2.1e-173 612.5 362 81.2
Haze_03242 Corylus avellana HOM05D005285 ORTHO05D006829 1.0e-172 610.1 365 81.9
Gohir.D08G037700 Gossypium hirsutum HOM05D005285 ORTHO05D006829 2.3e-172 609.0 362 82.0
Lj9A629T99 Lonicera japonica HOM05D005285 ORTHO05D006829 2.3e-172 609.0 358 82.1
Nitab4.5_0002012g0040 Nicotiana tabacum HOM05D005285 ORTHO05D006829 2.3e-172 609.0 350 83.1
Cfa010729 Carpinus fangiana HOM05D005285 ORTHO05D006829 6.8e-172 607.4 365 81.4
Sopen10g011740 Solanum pennellii HOM05D005285 ORTHO05D006829 6.8e-172 607.4 353 83.0
MBI04_g14265_MAGBIO Magnolia biondii HOM05D005285 ORTHO05D006829 1.2e-171 606.7 357 81.2
Rhsim01G0131200 Rhododendron simsii HOM05D005285 ORTHO05D006829 1.2e-171 606.7 371 78.7
Nitab4.5_0000050g0030 Nicotiana tabacum HOM05D005285 ORTHO05D006829 2.0e-171 605.9 348 83.3
Duzib268G1126 Durio zibethinus HOM05D005285 ORTHO05D006829 4.4e-171 604.7 360 81.4
Cc02_g27470 Coffea canephora HOM05D005285 ORTHO05D006829 5.8e-171 604.4 362 81.5
Glyma.12G239400 Glycine max HOM05D005285 ORTHO05D006829 1.3e-170 603.2 351 83.2
GSVIVG01032048001 Vitis vinifera HOM05D005285 ORTHO05D006829 2.2e-170 602.4 364 79.4
Eucgr.J01257 Eucalyptus grandis HOM05D005285 ORTHO05D006829 2.9e-170 602.1 365 79.2
Sed0014745 Sechium edule HOM05D005285 ORTHO05D006829 4.9e-170 601.3 361 79.8
DCAR_029637 Daucus carota HOM05D005285 ORTHO05D006829 8.3e-170 600.5 359 79.7
Lj3g0011351 Lotus japonicus HOM05D005285 ORTHO05D006829 1.9e-169 599.4 351 80.9
Oeu039102.1 Olea europaea HOM05D005285 ORTHO05D006829 1.9e-169 599.4 358 81.0
Phvul.011G213800 Phaseolus vulgaris HOM05D005285 ORTHO05D006829 2.4e-169 599.0 351 82.3
Lalb_Chr03g0033921 Lupinus albus HOM05D005285 ORTHO05D006829 3.2e-169 598.6 356 81.2
Hma1.2p1_1011F.1_g247500 Hydrangea macrophylla HOM05D005285 ORTHO05D006829 5.4e-169 597.8 388 75.5
ClCG10G012540 Citrullus lanatus HOM05D005285 ORTHO05D006829 9.2e-169 597.0 361 79.2
Migut.B01343 Erythranthe guttata HOM05D005285 ORTHO05D006829 9.2e-169 597.0 360 79.7
Ciclev10031943m.g Citrus clementina HOM05D005285 ORTHO05D006829 1.6e-168 596.3 354 80.8
SalBow5G3096 Salvia bowleyana HOM05D005285 ORTHO05D006829 2.0e-168 595.9 361 79.2
VMungo1127G2059 Vigna mungo HOM05D005285 ORTHO05D006829 2.0e-168 595.9 351 82.1
COL.COLO4_23903 Corchorus olitorius HOM05D005285 ORTHO05D006829 2.7e-168 595.5 364 79.7
Manes.10G147800 Manihot esculenta HOM05D005285 ORTHO05D006829 3.5e-168 595.1 367 79.0
Oeu064272.1 Olea europaea HOM05D005285 ORTHO05D006829 4.6e-168 594.7 359 80.2
QL04p004838 Quercus lobata HOM05D005285 ORTHO05D006829 4.6e-168 594.7 357 81.5
SalBow5G3836 Salvia bowleyana HOM05D005285 ORTHO05D006829 6.0e-168 594.3 361 78.9
TWI09G0675 Tripterygium wilfordii HOM05D005285 ORTHO05D006829 7.8e-168 594.0 360 79.2
MSTRG.20606 Avicennia marina HOM05D005285 ORTHO05D006829 1.0e-167 593.6 361 80.1
Lsat_1_v5_gn_1_109141 Lactuca sativa HOM05D005285 ORTHO05D006829 1.0e-167 593.6 362 79.0
TWI53G0546 Tripterygium wilfordii HOM05D005285 ORTHO05D006829 5.0e-167 591.3 360 79.7
arahy.Tifrunner.gnm1.ann1.DICK3U Arachis hypogaea HOM05D005285 ORTHO05D006829 8.6e-167 590.5 352 80.7
Potri.001G271100 Populus trichocarpa HOM05D005285 ORTHO05D006829 1.1e-166 590.1 367 78.5
Ca_23856_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 3.3e-166 588.6 351 80.1
THA.LOC104819060 Tarenaya hassleriana HOM05D005285 ORTHO05D006829 3.3e-166 588.6 360 78.6
ECA248G0026 Erigeron canadensis HOM05D005285 ORTHO05D006829 4.3e-166 588.2 355 79.4
Psat4g195080 Pisum sativum HOM05D005285 ORTHO05D006829 4.3e-166 588.2 349 80.2
SGA_v2.0_scaffold646G53323 Striga asiatica HOM05D005285 ORTHO05D006829 4.3e-166 588.2 355 79.2
Nn7g36086 Nelumbo nucifera HOM05D005285 ORTHO05D006829 7.3e-166 587.4 363 78.2
Aa31LG11G7560 Aethionema arabicum HOM05D005285 ORTHO05D006829 9.5e-166 587.0 360 79.2
Cpa.g.sc234.2 Carica papaya HOM05D005285 ORTHO05D006829 9.5e-166 587.0 362 79.8
Eucgr.J01254 Eucalyptus grandis HOM05D005285 ORTHO05D006829 1.6e-165 586.3 365 76.7
Hund03676 Selenicereus undatus HOM05D005285 ORTHO05D006829 1.6e-165 586.3 347 81.3
Eucgr.J01253 Eucalyptus grandis HOM05D005285 ORTHO05D006829 2.1e-165 585.9 365 76.4
Eucgr.J01256 Eucalyptus grandis HOM05D005285 ORTHO05D006829 2.1e-165 585.9 365 76.4
CsaV3_3G032330 Cucumis sativus L. HOM05D005285 ORTHO05D006829 3.6e-165 585.1 361 77.8
MELO3C023957.2 Cucumis melo HOM05D005285 ORTHO05D006829 4.7e-165 584.7 359 78.6
AUR62023050 Chenopodium quinoa HOM05D005285 ORTHO05D006829 6.2e-165 584.3 350 80.3
EL10Ac2g04308 Beta vulgaris HOM05D005285 ORTHO05D006829 1.1e-164 583.6 350 79.7
PSO339G1127 Papaver somniferum HOM05D005285 ORTHO05D006829 1.1e-164 583.6 364 76.9
Sp2g18470 Schrenkiella parvula HOM05D005285 ORTHO05D006829 3.1e-164 582.0 354 80.2
Hund03675 Selenicereus undatus HOM05D005285 ORTHO05D006829 5.2e-164 581.3 380 75.0
Aqoxy2G00109 Aquilegia oxysepala HOM05D005285 ORTHO05D006829 6.8e-164 580.9 360 76.1
Thhalv10004473m.g Eutrema salsugineum HOM05D005285 ORTHO05D006829 6.8e-164 580.9 357 79.0
Medtr8g036165 Medicago truncatula HOM05D005285 ORTHO05D006829 6.8e-164 580.9 352 79.5
AL8G20280 Arabidopsis lyrata HOM05D005285 ORTHO05D006829 8.9e-164 580.5 353 79.6
A06p39410 Brassica napus HOM05D005285 ORTHO05D006829 1.2e-163 580.1 356 80.1
BraA06t26856Z Brassica rapa HOM05D005285 ORTHO05D006829 1.2e-163 580.1 356 80.1
Carub.0008s0757 Capsella rubella HOM05D005285 ORTHO05D006829 1.2e-163 580.1 353 80.5
BcaC06g30830 Brassica carinata HOM05D005285 ORTHO05D006829 4.4e-163 578.2 356 79.5
AT5G48020 Arabidopsis thaliana HOM05D005285 ORTHO05D006829 1.3e-162 576.6 353 78.8
PSO384G1382 Papaver somniferum HOM05D005285 ORTHO05D006829 3.7e-162 575.1 364 75.8
CARHR184290 Cardamine hirsuta HOM05D005285 ORTHO05D006829 4.9e-162 574.7 353 78.5
BolC7t44405H Brassica oleracea HOM05D005285 ORTHO05D006829 2.4e-161 572.4 356 78.9
Os02g0717500 Oryza sativa ssp. japonica HOM05D005285 ORTHO05D006829 5.4e-161 571.2 357 76.5
C07p38860 Brassica napus HOM05D005285 ORTHO05D006829 9.2e-161 570.5 356 78.9
Zm00001eb189240 Zea mays HOM05D005285 ORTHO05D006829 1.6e-160 569.7 354 77.1
CDE04G1667 Ceratophyllum demersum HOM05D005285 ORTHO05D006829 2.7e-160 568.9 365 72.3
unitig_26.g9596 Utricularia gibba HOM05D005285 ORTHO05D006829 2.7e-160 568.9 355 76.1
vmacro21170 Vaccinium macrocarpon HOM05D005285 ORTHO05D006829 3.6e-157 558.5 418 68.4
Lj9C629T1 Lonicera japonica HOM05D005285 ORTHO05D006829 2.2e-154 549.3 352 74.7
Sabra16G0166500 Salix brachista HOM05D005285 ORTHO05D006829 4.9e-154 548.1 438 65.1
AUR62009369 Chenopodium quinoa HOM05D005285 ORTHO05D006829 2.4e-153 545.8 325 80.9
ATR0605G013 Amborella trichopoda HOM05D005285 ORTHO05D006829 7.1e-153 544.3 368 71.2
SGA_v2.0_scaffold646G53324 Striga asiatica HOM05D005285 ORTHO05D006829 3.9e-151 538.5 453 60.5
Atru.chr11.2010 Acer truncatum HOM05D005285 ORTHO05D006829 9.5e-150 533.9 348 73.6
QL04p004878 Quercus lobata HOM05D005285 ORTHO05D006829 1.2e-147 526.9 360 69.7
SEGI_06931 Sequoiadendron giganteum HOM05D005285 ORTHO05D006829 1.2e-147 526.9 377 67.9
Lsat_1_v5_gn_1_111020 Lactuca sativa HOM05D005285 ORTHO05D006829 8.4e-146 520.8 359 68.8
ECA248G2079 Erigeron canadensis HOM05D005285 ORTHO05D006829 3.2e-145 518.8 356 69.1
ECA248G2524 Erigeron canadensis HOM05D005285 ORTHO05D006829 3.2e-145 518.8 357 68.1
QL04p004868 Quercus lobata HOM05D005285 ORTHO05D006829 4.2e-145 518.5 360 67.5
Atru.chr11.2632 Acer truncatum HOM05D005285 ORTHO05D006829 2.7e-144 515.8 387 69.0
HanXRQChr11g0330581 Helianthus annuus HOM05D005285 ORTHO05D006829 2.7e-144 515.8 359 68.0
Prupe.2G008000 Prunus persica HOM05D005285 ORTHO05D006829 6.0e-144 514.6 276 89.1
AagrBONN_evm.TU.Sc2ySwM_228.3236 Anthoceros agrestis HOM05D005285 ORTHO05D006829 5.6e-142 508.1 361 66.2
QL04p004849 Quercus lobata HOM05D005285 ORTHO05D006829 2.4e-140 502.7 362 64.6
HanXRQChr11g0330561 Helianthus annuus HOM05D005285 ORTHO05D006829 3.4e-139 498.8 355 65.6
Mapoly0019s0106 Marchantia polymorpha HOM05D005285 ORTHO05D006829 2.1e-136 489.6 357 64.4
SMO364G0792 Selaginella moellendorffii HOM05D005285 ORTHO05D006829 3.5e-136 488.8 350 64.9
SHI04065 Sapria himalayana HOM05D000259 ORTHO05D000155 8.1e-133 477.6 519 50.9
Prupe.2G008200 Prunus persica HOM05D005285 ORTHO05D006829 3.1e-132 475.7 257 87.5
Sed0008744 Sechium edule HOM05D005285 ORTHO05D006829 1.8e-124 449.9 344 68.9
Pp3c17_23530 Physcomitrium patens HOM05D005285 ORTHO05D006829 2.0e-123 446.4 385 56.4
Sc11g0009350 Simmondsia chinensis HOM05D005285 ORTHO05D006829 4.9e-122 441.8 269 78.8
HPP92_022786 Vanilla planifolia HOM05D005285 ORTHO05D006829 4.2e-113 412.1 273 73.6
Ca_24082_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 3.8e-106 389.0 344 56.7
Lsat_1_v5_gn_1_72821 Lactuca sativa HOM05D005285 ORTHO05D006829 3.6e-104 382.5 345 55.7
Pp3c14_26250 Physcomitrium patens HOM05D005285 ORTHO05D006829 5.9e-99 365.2 256 67.6
Cre13.g586400 Chlamydomonas reinhardtii HOM05D005285 ORTHO05D006829 4.2e-97 359.0 373 49.9
Solyc10g037950.2 Solanum lycopersicum HOM05D005285 ORTHO05D006829 1.8e-84 317.0 193 79.3
arahy.Tifrunner.gnm1.ann1.A7HRCY Arachis hypogaea HOM05D005285 ORTHO05D006829 9.1e-84 314.7 271 61.3
Solyc10g037960.3 Solanum lycopersicum HOM05D005285 ORTHO05D006829 1.0e-79 301.2 162 87.0
HanXRQChr11g0330591 Helianthus annuus HOM05D005285 ORTHO05D006829 1.4e-79 300.8 223 65.0
TPR.G21737 Trifolium pratense HOM05D005285 ORTHO05D006829 5.2e-79 298.9 164 86.0
Eucgr.L03705 Eucalyptus grandis HOM05D005285 ORTHO05D006829 7.5e-78 295.0 180 78.9
HanXRQChr01g0017351 Helianthus annuus HOM05D005285 ORTHO05D006829 1.2e-75 287.7 179 75.4
TPR.G21746 Trifolium pratense HOM05D005285 ORTHO05D006829 7.5e-70 268.5 177 74.0
Ca_24079_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 1.3e-66 257.7 344 44.5
Cpa.g.sc2760.1 Carica papaya HOM05D005285 ORTHO05D006829 3.2e-52 209.9 174 59.2
Rhsim06G0016300 Rhododendron simsii HOM05D005285 ORTHO05D006829 4.1e-52 209.5 118 85.6
Peaxi162Scf00451g00621 Petunia axillaris HOM05D005285 ORTHO05D006829 6.6e-50 202.2 176 60.2
HanXRQChr11g0330601 Helianthus annuus HOM05D005285 ORTHO05D006829 2.4e-44 183.7 106 78.3
Oeu039103.1 Olea europaea HOM05D005285 ORTHO05D008854 1.1e-41 174.9 90 91.1
Actinidia21565 Actinidia chinensis HOM05D005285 ORTHO05D006829 4.1e-36 156.4 107 72.9
Atru.ctg794.7 Acer truncatum HOM05D005285 ORTHO05D037890 1.0e-26 125.2 177 42.9
Oeu039101.1 Olea europaea HOM05D000288 ORTHO05D000173 1.8e-23 114.4 88 65.9
vmacro21176 Vaccinium macrocarpon HOM05D005285 ORTHO05D006829 1.4e-20 104.8 112 53.6
arahy.Tifrunner.gnm1.ann1.J91U4H Arachis hypogaea HOM05D000001 ORTHO05D004533 4.2e-20 103.2 62 74.2
Atru.chr13.2215 Acer truncatum HOM05D005285 ORTHO05D037890 1.7e-18 97.8 55 78.2
TPR.G13313 Trifolium pratense HOM05D005285 ORTHO05D413460 1.7e-18 97.8 77 61.0
CDE07G0090 Ceratophyllum demersum HOM05D000288 ORTHO05D000173 2.5e-17 94.0 225 29.3
VMungo1127G1344 Vigna mungo HOM05D000839 ORTHO05D000664 3.1e-15 87.0 48 83.3
Lsat_1_v5_gn_0_6420 Lactuca sativa HOM05D002112 ORTHO05D007960 4.0e-15 86.7 78 57.7
arahy.Tifrunner.gnm1.ann1.43BKZS Arachis hypogaea HOM05D000001 ORTHO05D000003 1.5e-14 84.7 52 76.9
TPR.G1074 Trifolium pratense HOM05D005285 ORTHO05D411165 6.0e-11 72.8 76 48.7
Gorai.004G196400 Gossypium raimondii HOM05D001438 ORTHO05D001336 6.9e-07 59.3 218 22.9
arahy.Tifrunner.gnm1.ann1.81AB3J Arachis hypogaea HOM05D000001 ORTHO05D084391 2.6e-06 57.4 43 58.1
Lsat_1_v5_gn_9_64201 Lactuca sativa HOM05D000310 ORTHO05D005377 3.4e-06 57.0 108 38.9
Gorai.004G196100 Gossypium raimondii HOM05D001438 ORTHO05D001336 4.5e-06 56.6 213 23.9


User provided reference genes

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