Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN01G1125 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1911.3 991 100.0
FvH4_7g18760 Fragaria vesca HOM05D003976 ORTHO05D004711 0.0e+00 1781.1 1065 89.2
FAN03G2922 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1750.7 1065 88.3
FAN06G0006 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1739.2 1065 87.7
RcHm_v2.0_Chr1g0362571 Rosa chinensis HOM05D003976 ORTHO05D004711 0.0e+00 1733.4 1067 87.3
FAN10G3044 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1731.5 975 93.0
FAN10G1353 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1674.1 1007 88.8
Prupe.2G208700 Prunus persica HOM05D003976 ORTHO05D004711 0.0e+00 1639.8 1067 81.9
FAN06G1302 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1636.7 1067 83.2
MD01G1103100 Malus domestica HOM05D003976 ORTHO05D004711 0.0e+00 1585.5 1065 79.8
MD07G1169800 Malus domestica HOM05D003976 ORTHO05D004711 0.0e+00 1525.0 1024 79.8
Cfa001691 Carpinus fangiana HOM05D003976 ORTHO05D004711 0.0e+00 1495.3 1074 74.7
GSVIVG01016219001 Vitis vinifera HOM05D003976 ORTHO05D004711 0.0e+00 1490.7 1085 73.8
TWI63G1397 Tripterygium wilfordii HOM05D003976 ORTHO05D004711 0.0e+00 1485.3 1075 74.0
CANSAT56G1655 Cannabis sativa HOM05D003976 ORTHO05D004711 0.0e+00 1474.5 1073 73.9
Thecc.10G083800 Theobroma cacao HOM05D003976 ORTHO05D004711 0.0e+00 1472.2 1075 74.0
CiPaw.01G268500 Carya illinoinensis HOM05D003976 ORTHO05D004711 0.0e+00 1469.9 1073 73.9
Dinv31232 Davidia involucrata HOM05D003976 ORTHO05D004711 0.0e+00 1468.8 1078 73.7
Duzib114G0598 Durio zibethinus HOM05D003976 ORTHO05D004711 0.0e+00 1466.4 1069 73.6
CSS0009675 Camellia sinensis var. sinensis HOM05D003976 ORTHO05D004711 0.0e+00 1463.7 1074 73.5
Lalb_Chr06g0170321 Lupinus albus HOM05D003976 ORTHO05D004711 0.0e+00 1459.1 1069 73.4
TWI15G0187 Tripterygium wilfordii HOM05D003976 ORTHO05D004711 0.0e+00 1455.7 1075 73.1
TAR633G0511 Trochodendron aralioides HOM05D003976 ORTHO05D004711 0.0e+00 1451.8 1081 72.8
Manes.01G054600 Manihot esculenta HOM05D003976 ORTHO05D004711 0.0e+00 1437.6 1072 73.2
Glyma.10G207900 Glycine max HOM05D003976 ORTHO05D004711 0.0e+00 1437.2 1072 72.3
Lj5g0000763 Lotus japonicus HOM05D003976 ORTHO05D004711 0.0e+00 1437.2 1074 72.7
Nn4g25176 Nelumbo nucifera HOM05D003976 ORTHO05D004711 0.0e+00 1426.8 1077 71.4
PGR044G0607 Punica granatum HOM05D003976 ORTHO05D004711 0.0e+00 1426.8 1073 71.7
Potri.008G035300 Populus trichocarpa HOM05D003976 ORTHO05D004711 0.0e+00 1424.8 1073 72.4
Glyma.20G182800 Glycine max HOM05D003976 ORTHO05D004711 0.0e+00 1422.5 1086 71.4
Potri.010G227100 Populus trichocarpa HOM05D003976 ORTHO05D004711 0.0e+00 1420.2 1064 72.5
Medtr8g104855 Medicago truncatula HOM05D003976 ORTHO05D004711 0.0e+00 1414.1 1080 71.8
Phvul.007G098800 Phaseolus vulgaris HOM05D003976 ORTHO05D004711 0.0e+00 1414.1 1069 71.4
Ca_00795_v3 Cicer arietinum L. HOM05D003976 ORTHO05D004711 0.0e+00 1413.7 1072 71.5
Aqoxy1G01141 Aquilegia oxysepala HOM05D003976 ORTHO05D004711 0.0e+00 1411.4 1077 70.6
Atru.chr12.845 Acer truncatum HOM05D003976 ORTHO05D004711 0.0e+00 1409.0 1040 72.9
Medtr5g017640 Medicago truncatula HOM05D003976 ORTHO05D004711 0.0e+00 1402.5 1074 71.2
TPR.G32679 Trifolium pratense HOM05D003976 ORTHO05D004711 0.0e+00 1399.0 1067 72.3
Sed0018764 Sechium edule HOM05D003976 ORTHO05D004711 0.0e+00 1391.3 1074 70.6
Gohir.A05G414300 Gossypium hirsutum HOM05D003976 ORTHO05D004711 0.0e+00 1384.4 1070 70.5
Gohir.D04G001800 Gossypium hirsutum HOM05D003976 ORTHO05D004711 0.0e+00 1383.6 1070 70.7
Oeu007408.1 Olea europaea HOM05D003976 ORTHO05D004711 0.0e+00 1381.7 1070 69.2
VMungo0251G3371 Vigna mungo HOM05D003976 ORTHO05D004711 0.0e+00 1377.1 1072 70.0
Gorai.012G002900 Gossypium raimondii HOM05D003976 ORTHO05D004711 0.0e+00 1374.8 1070 70.3
Sopen11g004150 Solanum pennellii HOM05D003976 ORTHO05D004711 0.0e+00 1373.6 1077 69.1
Haze_16845 Corylus avellana HOM05D003976 ORTHO05D004711 0.0e+00 1372.5 1111 68.4
Nitab4.5_0001659g0180 Nicotiana tabacum HOM05D003976 ORTHO05D004711 0.0e+00 1367.4 1090 68.8
Solyc11g008340.3 Solanum lycopersicum HOM05D003976 ORTHO05D004711 0.0e+00 1364.7 1077 68.9
CsaV3_6G036710 Cucumis sativus L. HOM05D003976 ORTHO05D004711 0.0e+00 1362.4 1073 69.2
Lj2C20G12 Lonicera japonica HOM05D003976 ORTHO05D004711 0.0e+00 1356.3 1075 68.6
PSO063G6915 Papaver somniferum HOM05D003976 ORTHO05D004711 0.0e+00 1350.9 1074 68.3
THA.LOC104826898 Tarenaya hassleriana HOM05D003976 ORTHO05D004711 0.0e+00 1341.6 1069 68.6
PSO339G0981 Papaver somniferum HOM05D003976 ORTHO05D004711 0.0e+00 1339.3 1074 68.1
Migut.F01955 Erythranthe guttata HOM05D003976 ORTHO05D004711 0.0e+00 1338.6 1076 67.0
Sc06g0007810 Simmondsia chinensis HOM05D003976 ORTHO05D004711 0.0e+00 1331.6 1070 68.1
Nitab4.5_0001450g0090 Nicotiana tabacum HOM05D003976 ORTHO05D004711 0.0e+00 1329.7 1155 65.1
MSTRG.27486 Avicennia marina HOM05D003976 ORTHO05D004711 0.0e+00 1308.5 1076 65.8
SalBow4G0398 Salvia bowleyana HOM05D003976 ORTHO05D004711 0.0e+00 1302.7 1092 65.3
Sabra08G0023600 Salix brachista HOM05D003976 ORTHO05D004711 0.0e+00 1295.4 1124 65.2
Sabra10G0175200 Salix brachista HOM05D003976 ORTHO05D004711 0.0e+00 1293.9 1173 63.7
Sp3g08650 Schrenkiella parvula HOM05D003976 ORTHO05D004711 0.0e+00 1292.7 1069 66.1
Carub.0003s0956 Capsella rubella HOM05D003976 ORTHO05D004711 0.0e+00 1287.3 1069 65.8
AT3G10380 Arabidopsis thaliana HOM05D003976 ORTHO05D004711 0.0e+00 1285.8 1068 65.4
MELO3C019825.2 Cucumis melo HOM05D003976 ORTHO05D004711 0.0e+00 1285.0 1091 65.4
Ciclev10030617m.g Citrus clementina HOM05D003976 ORTHO05D004711 0.0e+00 1279.6 1070 67.4
ECA238G0457 Erigeron canadensis HOM05D003976 ORTHO05D004711 0.0e+00 1278.5 1068 65.4
C05p57780 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1277.7 1084 64.9
BolC5t34435H Brassica oleracea HOM05D003976 ORTHO05D004711 0.0e+00 1277.3 1084 64.9
DCAR_019085 Daucus carota HOM05D003976 ORTHO05D004711 0.0e+00 1273.5 1080 66.2
Aa31LG3G2960 Aethionema arabicum HOM05D003976 ORTHO05D004711 0.0e+00 1271.1 1033 66.3
CARHR084860 Cardamine hirsuta HOM05D003976 ORTHO05D004711 0.0e+00 1269.6 1069 65.1
AL3G21710 Arabidopsis lyrata HOM05D003976 ORTHO05D004711 0.0e+00 1269.2 1068 64.8
A05p38770 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1260.7 1069 64.7
C03p44100 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1259.2 1082 63.5
BolC1t05404H Brassica oleracea HOM05D003976 ORTHO05D004711 0.0e+00 1256.5 1103 63.6
BolC3t16685H Brassica oleracea HOM05D003976 ORTHO05D004711 0.0e+00 1255.0 1081 63.3
Psat7g009400 Pisum sativum HOM05D003976 ORTHO05D004711 0.0e+00 1251.1 990 69.8
BraA01t04258Z Brassica rapa HOM05D003976 ORTHO05D004711 0.0e+00 1249.6 1103 62.8
BcaB04g21214 Brassica carinata HOM05D003976 ORTHO05D004711 0.0e+00 1248.4 1069 64.5
Thhalv10019960m.g Eutrema salsugineum HOM05D003976 ORTHO05D004711 0.0e+00 1245.3 1074 63.8
BraA03t12817Z Brassica rapa HOM05D003976 ORTHO05D004711 0.0e+00 1245.0 1081 63.5
ClCG08G007720 Citrullus lanatus HOM05D003976 ORTHO05D004711 0.0e+00 1243.8 1020 67.5
A03p36500 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1243.4 1082 63.4
BcaC09g48100 Brassica carinata HOM05D003976 ORTHO05D004711 0.0e+00 1242.6 1058 64.6
MBI18_g27471_MAGBIO Magnolia biondii HOM05D003976 ORTHO05D004711 0.0e+00 1240.7 1000 67.6
HanXRQChr14g0456581 Helianthus annuus HOM05D003976 ORTHO05D004711 0.0e+00 1234.9 1066 63.5
Nn3g18724 Nelumbo nucifera HOM05D003976 ORTHO05D004711 0.0e+00 1234.6 1068 63.2
A01p41880 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1232.2 1056 64.3
HanXRQChr05g0161261 Helianthus annuus HOM05D003976 ORTHO05D004711 0.0e+00 1228.0 1068 63.3
HanXRQChr14g0455711 Helianthus annuus HOM05D003976 ORTHO05D004711 0.0e+00 1224.9 1067 63.3
AUR62023345 Chenopodium quinoa HOM05D003976 ORTHO05D004711 0.0e+00 1215.3 1074 63.8
BcaC05g29471 Brassica carinata HOM05D003976 ORTHO05D004711 0.0e+00 1206.0 1068 62.6
AUR62013811 Chenopodium quinoa HOM05D003976 ORTHO05D004711 0.0e+00 1201.8 1097 62.4
Oeu033874.1 Olea europaea HOM05D003976 ORTHO05D004711 0.0e+00 1194.9 944 68.9
Lsat_1_v5_gn_2_113061 Lactuca sativa HOM05D003976 ORTHO05D004711 0.0e+00 1187.9 1053 63.1
HPP92_022853 Vanilla planifolia HOM05D003976 ORTHO05D004711 0.0e+00 1153.3 1100 59.1
Os08g0318500 Oryza sativa ssp. japonica HOM05D003976 ORTHO05D004711 0.0e+00 1133.6 1070 58.4
SGA_v2.0_scaffold100G29552 Striga asiatica HOM05D003976 ORTHO05D004711 0.0e+00 1118.2 1220 54.8
Zm00001eb330040 Zea mays HOM05D003976 ORTHO05D004711 0.0e+00 1114.4 1067 58.6
EL10Ac1g00696 Beta vulgaris HOM05D003976 ORTHO05D004711 0.0e+00 1104.4 1176 56.9
CDE10G1014 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 0.0e+00 1103.6 1022 61.4
arahy.Tifrunner.gnm1.ann1.9SI57B Arachis hypogaea HOM05D003976 ORTHO05D004711 0.0e+00 1090.1 1035 61.1
SEGI_27589 Sequoiadendron giganteum HOM05D003976 ORTHO05D004711 0.0e+00 1089.3 1069 56.7
Eucgr.K02187 Eucalyptus grandis HOM05D003976 ORTHO05D004711 4.2e-304 1048.1 877 66.9
Hma1.2p1_0384F.1_g140840 Hydrangea macrophylla HOM05D003976 ORTHO05D004711 9.1e-291 1003.8 720 75.7
unitig_46.g18603 Utricularia gibba HOM05D003976 ORTHO05D004711 1.2e-290 1003.4 1057 55.6
QL08p054317 Quercus lobata HOM05D003976 ORTHO05D004711 1.5e-285 986.5 719 73.4
Gohir.D10G210600 Gossypium hirsutum HOM05D003976 ORTHO05D004711 1.6e-279 966.5 901 61.4
ATR0730G009 Amborella trichopoda HOM05D003976 ORTHO05D004711 7.5e-269 931.0 905 58.6
Gorai.011G236100 Gossypium raimondii HOM05D003976 ORTHO05D004711 7.5e-253 877.9 971 54.8
Pp3c16_24260 Physcomitrium patens HOM05D003976 ORTHO05D004711 3.1e-246 855.9 1097 47.2
Mapoly0170s0008 Marchantia polymorpha HOM05D003976 ORTHO05D004711 6.4e-244 848.2 1085 46.2
CiPaw.02G172200 Carya illinoinensis HOM05D003976 ORTHO05D004711 1.9e-232 810.1 629 71.2
Pp3c3_21120 Physcomitrium patens HOM05D003976 ORTHO05D004711 2.6e-221 773.1 1093 44.2
Actinidia18607 Actinidia chinensis HOM05D003976 ORTHO05D004711 6.9e-214 748.4 810 56.8
Gohir.A10G202400 Gossypium hirsutum HOM05D003976 ORTHO05D004711 3.4e-213 746.1 775 57.3
Peaxi162Scf00145g01214 Petunia axillaris HOM05D003976 ORTHO05D004711 7.9e-210 734.9 544 73.2
Pp3c12_15420 Physcomitrium patens HOM05D003976 ORTHO05D004711 1.8e-209 733.8 1078 42.2
COL.COLO4_34215 Corchorus olitorius HOM05D003976 ORTHO05D004711 2.3e-209 733.4 571 70.1
SMO172G0221 Selaginella moellendorffii HOM05D003976 ORTHO05D004711 1.3e-207 727.6 1044 43.0
Hund17145 Selenicereus undatus HOM05D003976 ORTHO05D004711 7.1e-203 711.8 668 59.9
BraA05t22668Z Brassica rapa HOM05D003976 ORTHO05D004711 1.0e-201 708.0 566 67.5
arahy.Tifrunner.gnm1.ann1.WBL645 Arachis hypogaea HOM05D003976 ORTHO05D004711 2.5e-192 676.8 581 64.5
COL.COLO4_34214 Corchorus olitorius HOM05D003976 ORTHO05D004711 5.5e-187 659.1 497 71.4
Peaxi162Scf00145g01215 Petunia axillaris HOM05D003976 ORTHO05D004711 4.5e-181 639.4 511 66.7
vmacro00386 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 1.5e-176 624.4 841 48.0
CiPaw.02G172100 Carya illinoinensis HOM05D003976 ORTHO05D004711 3.4e-144 516.9 344 79.7
CBR_g30687 Chara braunii HOM05D003976 ORTHO05D004711 2.2e-143 514.2 1234 32.7
CAN.G321.62 Capsicum annuum HOM05D003976 ORTHO05D004711 2.0e-141 507.7 402 68.2
AagrBONN_evm.TU.Sc2ySwM_228.4637 Anthoceros agrestis HOM05D003976 ORTHO05D004711 3.0e-140 503.8 803 41.5
BraA05t22669Z Brassica rapa HOM05D003976 ORTHO05D004711 2.5e-131 474.2 427 62.3
Lalb_Chr21g0313681 Lupinus albus HOM05D003976 ORTHO05D004711 9.9e-128 462.2 350 71.7
Rhsim03G0115800 Rhododendron simsii HOM05D003976 ORTHO05D004711 2.4e-126 457.6 353 69.4
Cpa.g.sc53.132 Carica papaya HOM05D003976 ORTHO05D004711 5.8e-120 436.4 319 73.0
vmacro00383 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 1.9e-118 431.4 371 63.9
QL08p054329 Quercus lobata HOM05D003976 ORTHO05D004711 9.0e-113 412.5 270 80.7
Lalb_Chr21g0313551 Lupinus albus HOM05D003976 ORTHO05D004711 2.4e-110 404.4 284 76.1
Cpa.g.sc53.134 Carica papaya HOM05D003976 ORTHO05D004711 2.1e-109 401.4 348 67.0
CDE10G0060 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 1.8e-100 371.7 369 57.7
Cc02_g10920 Coffea canephora HOM05D003976 ORTHO05D004711 2.8e-90 337.8 229 76.0
CDE10G0443 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 7.7e-80 303.1 338 53.8
BcaNung07314 Brassica carinata HOM05D003976 ORTHO05D004711 3.7e-74 284.3 178 78.7
VMungo0720G2709 Vigna mungo HOM05D003976 ORTHO05D004711 2.7e-69 268.1 194 73.2
HPP92_026132 Vanilla planifolia HOM05D003976 ORTHO05D004711 2.7e-61 241.5 143 81.1
CDE10G0301 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 1.5e-59 235.7 162 72.8
ATR0730G060 Amborella trichopoda HOM05D003976 ORTHO05D004711 7.7e-56 223.4 130 83.1
PSO478G0690 Papaver somniferum HOM05D003976 ORTHO05D004711 3.4e-51 208.0 129 81.4
SEGI_25267 Sequoiadendron giganteum HOM05D003976 ORTHO05D004711 7.7e-48 196.8 138 68.1
TPR.G33031 Trifolium pratense HOM05D003976 ORTHO05D004711 5.9e-40 170.6 118 72.0
Lsat_1_v5_gn_4_4660 Lactuca sativa HOM05D003976 ORTHO05D004711 5.7e-35 154.1 169 54.4
Actinidia18608 Actinidia chinensis HOM05D003976 ORTHO05D004711 7.5e-35 153.7 85 85.9
AL491U10010 Arabidopsis lyrata HOM05D003976 ORTHO05D004711 2.8e-34 151.8 101 72.3
CAN.G796.1 Capsicum annuum HOM05D003976 ORTHO05D004711 4.9e-34 151.0 178 52.2
Lj6g0023100 Lotus japonicus HOM05D003976 ORTHO05D004711 6.3e-34 150.6 104 73.1
Psat7g009440 Pisum sativum HOM05D003976 ORTHO05D004711 7.0e-33 147.1 86 79.1
vmacro00385 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 1.7e-31 142.5 95 75.8
Gohir.D10G210566 Gossypium hirsutum HOM05D003976 ORTHO05D004711 5.0e-31 141.0 87 74.7
SHI08886 Sapria himalayana HOM05D000002 ORTHO05D000001 4.0e-28 131.3 92 76.1
Cc02_g10910 Coffea canephora HOM05D003976 ORTHO05D004711 1.5e-27 129.4 87 75.9
Lsat_1_v5_gn_9_29220 Lactuca sativa HOM05D003976 ORTHO05D006024 1.5e-27 129.4 86 77.9
SHI08885 Sapria himalayana HOM05D000002 ORTHO05D000001 1.7e-26 125.9 79 72.2
TPR.G28835 Trifolium pratense HOM05D003976 ORTHO05D004711 4.9e-26 124.4 79 72.2
Cre01.g003050 Chlamydomonas reinhardtii HOM05D003976 ORTHO05D004711 1.9e-25 122.5 209 32.1
Hma1.2p1_0384F.1_g140740 Hydrangea macrophylla HOM05D003976 ORTHO05D004711 5.6e-22 110.9 79 73.4
Lalb_Chr21g0313561 Lupinus albus HOM05D003976 ORTHO05D004711 5.2e-20 104.4 82 67.1
Lalb_Chr21g0313691 Lupinus albus HOM05D003976 ORTHO05D004711 5.2e-20 104.4 82 67.1
Cc06_g17220 Coffea canephora HOM05D003976 ORTHO05D004711 6.8e-20 104.0 81 63.0
Prupe.5G231200 Prunus persica HOM05D003976 ORTHO05D004711 1.2e-19 103.2 99 56.6
Lsat_1_v5_gn_6_63420 Lactuca sativa HOM05D003976 ORTHO05D004711 6.0e-16 90.9 71 67.6
vmacro16680 Vaccinium macrocarpon HOM05D002957 ORTHO05D007941 1.1e-14 86.7 62 67.7
vmacro23142 Vaccinium macrocarpon HOM05D002957 ORTHO05D007941 1.1e-14 86.7 62 67.7
Hma1.2p1_0384F.1_g140760 Hydrangea macrophylla HOM05D003976 ORTHO05D004711 7.3e-14 84.0 49 81.6
vmacro00384 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 3.6e-13 81.6 89 55.1
TPR.G6473 Trifolium pratense HOM05D003976 ORTHO05D004711 1.5e-11 76.3 48 77.1
Cc03_g09730 Coffea canephora HOM05D003976 ORTHO05D004711 2.9e-10 72.0 58 62.1
Aa31LG6G7350 Aethionema arabicum HOM05D003976 ORTHO05D004711 3.7e-10 71.6 53 66.0
HanXRQChr05g0134171 Helianthus annuus HOM05D003976 ORTHO05D004711 4.9e-10 71.2 50 76.0
MBI18_g27470_MAGBIO Magnolia biondii HOM05D003976 ORTHO05D004711 2.7e-08 65.5 52 55.8


User provided reference genes

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