Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN01G1119 Fragaria x ananassa HOM05D003588 ORTHO05D004252 2.2e-174 615.5 319 100.0
FvH4_7g07990 Fragaria vesca HOM05D003588 ORTHO05D004252 6.3e-169 597.4 338 94.1
FAN03G2066 Fragaria x ananassa HOM05D003588 ORTHO05D004252 2.1e-164 582.4 362 87.0
FAN10G2177 Fragaria x ananassa HOM05D003588 ORTHO05D004252 1.8e-163 579.3 334 92.5
FAN06G2375 Fragaria x ananassa HOM05D003588 ORTHO05D004252 2.4e-160 568.9 373 83.9
MD17G1249900 Malus domestica HOM05D003588 ORTHO05D004252 1.0e-150 537.0 323 87.3
MD09G1255900 Malus domestica HOM05D003588 ORTHO05D004252 1.7e-150 536.2 320 87.2
Prupe.3G148000 Prunus persica HOM05D003588 ORTHO05D004252 6.8e-147 524.2 334 84.1
MD17G1249700 Malus domestica HOM05D003588 ORTHO05D004252 6.0e-143 511.1 323 84.2
TWI53G1720 Tripterygium wilfordii HOM05D003588 ORTHO05D004252 8.6e-134 480.7 349 76.8
QL04p012047 Quercus lobata HOM05D003588 ORTHO05D004252 5.6e-133 478.0 328 80.2
CANSAT78G2002 Cannabis sativa HOM05D003588 ORTHO05D004252 1.4e-128 463.4 339 75.5
Dinv33964 Davidia involucrata HOM05D003588 ORTHO05D004252 7.1e-128 461.1 322 78.6
ClCG11G007740 Citrullus lanatus HOM05D003588 ORTHO05D004252 4.6e-127 458.4 328 76.8
COL.COLO4_09374 Corchorus olitorius HOM05D003588 ORTHO05D004252 1.7e-126 456.4 324 77.8
CiPaw.04G044200 Carya illinoinensis HOM05D003588 ORTHO05D004252 2.3e-126 456.1 339 73.5
EL10Ac2g04530 Beta vulgaris HOM05D003588 ORTHO05D004252 4.3e-125 451.8 318 74.5
PSO478G1111 Papaver somniferum HOM05D003588 ORTHO05D004252 4.3e-125 451.8 341 72.1
CSS0016689 Camellia sinensis var. sinensis HOM05D003588 ORTHO05D004252 2.1e-124 449.5 337 73.9
CSS0025104 Camellia sinensis var. sinensis HOM05D003588 ORTHO05D004252 2.1e-124 449.5 337 73.9
Thecc.04G128900 Theobroma cacao HOM05D003588 ORTHO05D004252 2.1e-124 449.5 340 73.2
Potri.004G095900 Populus trichocarpa HOM05D003588 ORTHO05D004252 2.8e-124 449.1 340 73.2
Sed0005237 Sechium edule HOM05D003588 ORTHO05D004252 6.2e-124 448.0 343 72.9
Nn4g23954 Nelumbo nucifera HOM05D003588 ORTHO05D004252 8.1e-124 447.6 338 71.6
Sabra04G0065000 Salix brachista HOM05D003588 ORTHO05D004252 1.8e-123 446.4 320 75.3
Ca_08090_v3 Cicer arietinum L. HOM05D003588 ORTHO05D004252 2.4e-123 446.0 326 75.2
TPR.G16544 Trifolium pratense HOM05D003588 ORTHO05D004252 3.1e-123 445.7 347 70.0
Atru.chr1.1617 Acer truncatum HOM05D003588 ORTHO05D004252 4.0e-123 445.3 332 73.2
Cpa.g.sc170.32 Carica papaya HOM05D003588 ORTHO05D004252 5.2e-123 444.9 343 71.4
Medtr7g082650 Medicago truncatula HOM05D003588 ORTHO05D004252 1.2e-122 443.7 346 70.2
PSO017G4387 Papaver somniferum HOM05D003588 ORTHO05D004252 2.0e-122 443.0 341 71.0
TAR622G0110 Trochodendron aralioides HOM05D003588 ORTHO05D004252 4.4e-122 441.8 336 73.2
Duzib138G1780 Durio zibethinus HOM05D003588 ORTHO05D004252 5.8e-122 441.4 338 73.1
vmacro22953 Vaccinium macrocarpon HOM05D003588 ORTHO05D004252 7.6e-122 441.0 328 75.6
Ciclev10010937m.g Citrus clementina HOM05D003588 ORTHO05D004252 9.9e-122 440.7 350 71.7
Lj4C184G4 Lonicera japonica HOM05D003588 ORTHO05D004252 9.9e-122 440.7 328 74.1
Duzib133G0570 Durio zibethinus HOM05D003588 ORTHO05D004252 2.2e-121 439.5 338 72.2
Eucgr.F02790 Eucalyptus grandis HOM05D003588 ORTHO05D004252 2.2e-121 439.5 339 72.0
Glyma.02G089000 Glycine max HOM05D003588 ORTHO05D004252 2.2e-121 439.5 343 71.1
Lj1g0020363 Lotus japonicus HOM05D003588 ORTHO05D004252 8.4e-121 437.6 344 70.1
PGR004G1031 Punica granatum HOM05D003588 ORTHO05D004252 8.4e-121 437.6 341 71.8
CsaV3_2G033840 Cucumis sativus L. HOM05D003588 ORTHO05D004252 4.2e-120 435.3 343 70.6
VMungo1383G2782 Vigna mungo HOM05D003588 ORTHO05D004252 9.3e-120 434.1 328 73.5
Phvul.008G008300 Phaseolus vulgaris HOM05D003588 ORTHO05D004252 3.5e-119 432.2 344 70.3
Manes.02G071350 Manihot esculenta HOM05D003588 ORTHO05D004252 2.3e-118 429.5 340 70.6
Rhsim10G0072600 Rhododendron simsii HOM05D003588 ORTHO05D004252 2.3e-118 429.5 354 67.2
AUR62023267 Chenopodium quinoa HOM05D003588 ORTHO05D004252 6.6e-118 427.9 319 71.8
Gohir.A07G174400 Gossypium hirsutum HOM05D003588 ORTHO05D004252 5.6e-117 424.9 344 71.5
Hund16184 Selenicereus undatus HOM05D003588 ORTHO05D004252 7.3e-117 424.5 325 71.1
Gorai.001G202700 Gossypium raimondii HOM05D003588 ORTHO05D004252 9.6e-117 424.1 344 71.5
Gohir.D07G181700 Gossypium hirsutum HOM05D003588 ORTHO05D004252 1.3e-116 423.7 344 71.2
CSS0045616 Camellia sinensis var. sinensis HOM05D003588 ORTHO05D004252 2.1e-116 422.9 348 68.4
Nitab4.5_0000753g0220 Nicotiana tabacum HOM05D003588 ORTHO05D004252 2.1e-116 422.9 324 71.0
Ah.10g037630 Amaranthus hybridus HOM05D003588 ORTHO05D004252 4.0e-115 418.7 321 69.2
Cc07_g08540 Coffea canephora HOM05D003588 ORTHO05D004252 5.3e-115 418.3 357 65.8
arahy.Tifrunner.gnm1.ann1.JMF5N7 Arachis hypogaea HOM05D003588 ORTHO05D004252 9.0e-115 417.5 328 70.4
arahy.Tifrunner.gnm1.ann1.QJYU1D Arachis hypogaea HOM05D003588 ORTHO05D004252 9.0e-115 417.5 328 70.4
Oeu050384.1 Olea europaea HOM05D003588 ORTHO05D004252 2.6e-114 416.0 346 65.6
AT5G16210 Arabidopsis thaliana HOM05D003588 ORTHO05D004252 1.7e-113 413.3 348 67.5
Manes.01G112900 Manihot esculenta HOM05D003588 ORTHO05D004252 1.7e-113 413.3 344 66.9
Nitab4.5_0008521g0020 Nicotiana tabacum HOM05D003588 ORTHO05D004252 1.7e-113 413.3 324 70.7
Haze_14184 Corylus avellana HOM05D003588 ORTHO05D004252 3.8e-113 412.1 371 65.2
Lalb_Chr10g0091441 Lupinus albus HOM05D003588 ORTHO05D004252 3.8e-113 412.1 371 63.1
AL6G27090 Arabidopsis lyrata HOM05D003588 ORTHO05D004252 1.1e-112 410.6 349 67.3
Sopen02g031000 Solanum pennellii HOM05D003588 ORTHO05D004252 1.4e-112 410.2 355 65.9
BolC2t06743H Brassica oleracea HOM05D003588 ORTHO05D004252 2.4e-112 409.5 350 66.0
Thhalv10012470m.g Eutrema salsugineum HOM05D003588 ORTHO05D004252 2.4e-112 409.5 350 66.9
Aa31LG11G13400 Aethionema arabicum HOM05D003588 ORTHO05D004252 7.1e-112 407.9 348 65.8
BcaC03g18474 Brassica carinata HOM05D003588 ORTHO05D004252 7.1e-112 407.9 350 66.0
THA.LOC104820941 Tarenaya hassleriana HOM05D003588 ORTHO05D004252 7.1e-112 407.9 339 70.2
Carub.0006s1440 Capsella rubella HOM05D003588 ORTHO05D004252 1.2e-111 407.1 347 67.1
A02p03430 Brassica napus HOM05D003588 ORTHO05D004252 1.6e-111 406.8 350 65.7
C02p08190 Brassica napus HOM05D003588 ORTHO05D004252 1.6e-111 406.8 350 66.0
BraA02t05314Z Brassica rapa HOM05D003588 ORTHO05D004252 1.6e-111 406.8 350 65.7
Sp6g27950 Schrenkiella parvula HOM05D003588 ORTHO05D004252 1.6e-111 406.8 350 66.9
CARHR197100 Cardamine hirsuta HOM05D003588 ORTHO05D004252 1.7e-110 403.3 350 66.9
Ca_04138_v3 Cicer arietinum L. HOM05D003588 ORTHO05D004252 5.1e-110 401.7 345 65.2
DCAR_025903 Daucus carota HOM05D003588 ORTHO05D004252 1.5e-109 400.2 342 64.6
Gohir.D11G172000 Gossypium hirsutum HOM05D003588 ORTHO05D004252 6.2e-108 394.8 347 67.1
Gohir.A11G165800 Gossypium hirsutum HOM05D003588 ORTHO05D004252 1.1e-107 394.0 347 67.1
Gorai.007G184400 Gossypium raimondii HOM05D003588 ORTHO05D004252 1.4e-107 393.7 347 66.9
ECA232G2944 Erigeron canadensis HOM05D003588 ORTHO05D004252 5.8e-106 388.3 342 62.3
vmacro05528 Vaccinium macrocarpon HOM05D003588 ORTHO05D004252 4.9e-105 385.2 324 69.4
Medtr6g004240 Medicago truncatula HOM05D003588 ORTHO05D004252 9.3e-104 380.9 337 62.9
Glyma.05G002100 Glycine max HOM05D003588 ORTHO05D004252 3.0e-102 375.9 345 63.5
Os01g0514300 Oryza sativa ssp. japonica HOM05D003588 ORTHO05D004252 3.9e-102 375.6 340 62.1
Lj2g0002647 Lotus japonicus HOM05D003588 ORTHO05D004252 6.7e-102 374.8 345 62.6
VMungo0464G0444 Vigna mungo HOM05D003588 ORTHO05D004252 1.1e-101 374.0 326 65.3
TPR.G25232 Trifolium pratense HOM05D003588 ORTHO05D004252 9.6e-101 370.9 344 62.2
Zm00001eb341840 Zea mays HOM05D003588 ORTHO05D004252 9.0e-99 364.4 337 60.8
BcaNung02226 Brassica carinata HOM05D003588 ORTHO05D004252 3.4e-98 362.5 314 66.2
SGA_v2.0_scaffold49G18119 Striga asiatica HOM05D003588 ORTHO05D004252 2.2e-97 359.8 279 69.5
BcaC03g18481 Brassica carinata HOM05D003588 ORTHO05D004252 5.5e-96 355.1 351 61.3
Phvul.004G002300 Phaseolus vulgaris HOM05D003588 ORTHO05D004252 9.3e-96 354.4 365 60.3
Psat3g097680 Pisum sativum HOM05D003588 ORTHO05D004252 4.6e-95 352.1 349 59.6
BcaC04g18898 Brassica carinata HOM05D003588 ORTHO05D004252 1.2e-90 337.4 358 58.9
Actinidia15898 Actinidia chinensis HOM05D003588 ORTHO05D004252 2.6e-90 336.3 285 69.5
Lalb_Chr06g0176731 Lupinus albus HOM05D003588 ORTHO05D004252 5.0e-89 332.0 356 56.2
unitig_899.g14514 Utricularia gibba HOM05D003588 ORTHO05D004252 5.7e-85 318.5 334 53.9
arahy.Tifrunner.gnm1.ann1.K3Z2GB Arachis hypogaea HOM05D003588 ORTHO05D004252 7.7e-82 308.1 347 53.0
arahy.Tifrunner.gnm1.ann1.CE0ZIG Arachis hypogaea HOM05D003588 ORTHO05D004252 2.2e-81 306.6 347 53.0
arahy.Tifrunner.gnm1.ann1.SZ4JBM Arachis hypogaea HOM05D003588 ORTHO05D009236 1.9e-80 303.5 316 58.5
RcHm_v2.0_Chr3g0494121 Rosa chinensis HOM05D003588 ORTHO05D004252 8.8e-78 294.7 163 93.3
Migut.H00238 Erythranthe guttata HOM05D003588 ORTHO05D004252 1.7e-76 290.4 233 63.9
Mapoly0103s0005 Marchantia polymorpha HOM05D003588 ORTHO05D004252 1.1e-75 287.7 342 49.7
Pp3c18_21770 Physcomitrium patens HOM05D003588 ORTHO05D004252 1.9e-72 276.9 327 49.2
RcHm_v2.0_Chr3g0494131 Rosa chinensis HOM05D003588 ORTHO05D004252 1.4e-70 270.8 146 95.2
GSVIVG01030979001 Vitis vinifera HOM05D003588 ORTHO05D004252 3.3e-69 266.2 171 83.6
CAN.G625.55 Capsicum annuum HOM05D003588 ORTHO05D000105 4.1e-67 259.2 490 38.8
QL02p050339 Quercus lobata HOM05D003588 ORTHO05D004252 2.6e-66 256.5 165 83.0
SMO356G0339 Selaginella moellendorffii HOM05D003588 ORTHO05D004252 4.5e-66 255.8 315 46.3
MELO3C008156.2 Cucumis melo HOM05D003588 ORTHO05D004252 6.1e-63 245.4 165 78.8
Aqoxy3G00199 Aquilegia oxysepala HOM05D003588 ORTHO05D004252 8.0e-63 245.0 165 78.2
MBI16_g38076_MAGBIO Magnolia biondii HOM05D003588 ORTHO05D004252 3.0e-62 243.0 173 74.0
Dinv34794 Davidia involucrata HOM05D003588 ORTHO05D004252 2.0e-61 240.4 158 79.7
AUR62009039 Chenopodium quinoa HOM05D003588 ORTHO05D004252 8.2e-60 235.0 163 74.8
C09p60810 Brassica napus HOM05D003588 ORTHO05D004252 1.1e-59 234.6 296 52.0
BolC9t58921H Brassica oleracea HOM05D003588 ORTHO05D004252 1.1e-59 234.6 296 52.0
Solyc02g086330.4 Solanum lycopersicum HOM05D003588 ORTHO05D004252 5.0e-57 225.7 167 71.9
GSVIVG01030980001 Vitis vinifera HOM05D003588 ORTHO05D004252 5.0e-57 225.7 149 77.2
ATR0681G033 Amborella trichopoda HOM05D003588 ORTHO05D004252 8.5e-57 224.9 172 66.3
MSTRG.2779 Avicennia marina HOM05D003588 ORTHO05D004252 1.5e-56 224.2 163 70.6
QL02p050347 Quercus lobata HOM05D003588 ORTHO05D004252 1.9e-56 223.8 147 81.0
Lsat_1_v5_gn_4_155600 Lactuca sativa HOM05D003588 ORTHO05D004252 1.2e-55 221.1 165 69.7
HanXRQChr09g0262691 Helianthus annuus HOM05D003588 ORTHO05D004252 8.0e-55 218.4 165 67.9
TPR.G25236 Trifolium pratense HOM05D003588 ORTHO05D004252 1.0e-54 218.0 164 70.1
CDE09G0638 Ceratophyllum demersum HOM05D003588 ORTHO05D004252 2.6e-53 213.4 197 61.4
MSTRG.2778 Avicennia marina HOM05D003588 ORTHO05D004252 9.8e-53 211.5 155 72.3
Psat1g052560 Pisum sativum HOM05D003588 ORTHO05D004252 6.3e-52 208.8 164 65.9
Cfa007893 Carpinus fangiana HOM05D003588 ORTHO05D004252 8.3e-52 208.4 140 77.1
Aqoxy3G00200 Aquilegia oxysepala HOM05D003588 ORTHO05D004252 1.1e-51 208.0 148 75.0
Sc10g0001060 Simmondsia chinensis HOM05D003588 ORTHO05D004252 5.9e-50 202.2 135 75.6
Pp3c3_38010 Physcomitrium patens HOM05D003588 ORTHO05D004252 7.7e-50 201.8 324 40.4
Pp3c18_21850 Physcomitrium patens HOM05D003588 ORTHO05D004252 1.3e-49 201.1 218 51.4
MBI16_g38075_MAGBIO Magnolia biondii HOM05D003588 ORTHO05D004252 2.2e-49 200.3 161 67.7
A10p22850 Brassica napus HOM05D003588 ORTHO05D004252 3.8e-49 199.5 322 43.2
BraA10t44352Z Brassica rapa HOM05D003588 ORTHO05D004252 3.8e-49 199.5 322 43.2
Psat1g004680 Pisum sativum HOM05D003588 ORTHO05D004252 3.8e-49 199.5 142 74.6
CBR_g34722 Chara braunii HOM05D003588 ORTHO05D004252 2.5e-48 196.8 405 33.3
Lsat_1_v5_gn_4_155620 Lactuca sativa HOM05D003588 ORTHO05D004252 3.0e-46 189.9 145 69.7
HanXRQChr09g0262701 Helianthus annuus HOM05D003588 ORTHO05D004252 4.0e-46 189.5 151 68.9
ATR0681G242 Amborella trichopoda HOM05D003588 ORTHO05D004252 2.6e-45 186.8 166 61.4
Peaxi162Scf00877g00020 Petunia axillaris HOM05D003588 ORTHO05D004252 3.1e-43 179.9 133 71.4
AUR62009038 Chenopodium quinoa HOM05D003588 ORTHO05D004252 1.9e-40 170.6 123 69.9
AagrBONN_evm.TU.Sc2ySwM_344.2595 Anthoceros agrestis HOM05D003588 ORTHO05D004252 1.5e-37 161.0 163 52.1
Dinv34795 Davidia involucrata HOM05D003588 ORTHO05D004252 8.9e-30 135.2 86 79.1
CDE02G3249 Ceratophyllum demersum HOM05D003588 ORTHO05D004252 2.9e-28 130.2 116 60.3
Hma1.2p1_0391F.1_g142780 Hydrangea macrophylla HOM05D003588 ORTHO05D004252 3.7e-28 129.8 77 84.4
CAN.G1113.1 Capsicum annuum HOM05D003588 ORTHO05D004252 4.3e-24 116.3 75 80.0
SEGI_01406 Sequoiadendron giganteum HOM05D003588 ORTHO05D004252 4.3e-24 116.3 128 53.1
arahy.Tifrunner.gnm1.ann1.3AG3I6 Arachis hypogaea HOM05D003588 ORTHO05D004252 4.7e-23 112.8 89 65.2
CDE02G1293 Ceratophyllum demersum HOM05D003588 ORTHO05D004252 1.4e-22 111.3 99 63.6
Solyc02g086320.1 Solanum lycopersicum HOM05D003588 ORTHO05D004252 7.5e-21 105.5 93 65.6
BcaB05g22772 Brassica carinata HOM05D003588 ORTHO05D004252 6.4e-20 102.4 140 45.0
Lsat_1_v5_gn_5_147680 Lactuca sativa HOM05D003588 ORTHO05D004252 1.1e-19 101.7 86 61.6
Glyma.19G002000 Glycine max HOM05D003588 ORTHO05D004252 7.8e-18 95.5 101 59.4
BcaC03g18478 Brassica carinata HOM05D003588 ORTHO05D004252 1.5e-16 91.3 98 57.1
CSS0049688 Camellia sinensis var. sinensis HOM05D003588 ORTHO05D004252 4.9e-12 76.3 113 46.0
CDE09G1345 Ceratophyllum demersum HOM05D003588 ORTHO05D004252 2.5e-08 63.9 54 55.6
Aqoxy1G03195 Aquilegia oxysepala HOM05D003588 ORTHO05D004252 7.3e-08 62.4 65 50.8
HPP92_020150 Vanilla planifolia HOM05D003588 ORTHO05D004252 1.2e-07 61.6 120 33.3


User provided reference genes

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