Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN01G0994 Fragaria x ananassa HOM05D005634 ORTHO05D006926 2.8e-126 455.3 232 100.0
FAN10G1744 Fragaria x ananassa HOM05D005634 ORTHO05D006926 8.8e-120 433.7 232 95.3
FAN03G3354 Fragaria x ananassa HOM05D005634 ORTHO05D006926 3.2e-98 362.1 191 96.9
Prupe.2G315600 Prunus persica HOM05D005634 ORTHO05D006926 3.6e-97 358.6 239 80.8
Atru.chr12.2317 Acer truncatum HOM05D005634 ORTHO05D006926 8.8e-96 354.0 239 77.4
QL09p007605 Quercus lobata HOM05D005634 ORTHO05D006926 1.1e-93 347.1 239 76.6
MD01G1225500 Malus domestica HOM05D005634 ORTHO05D006926 2.4e-93 345.9 242 78.9
MD07G1296000 Malus domestica HOM05D005634 ORTHO05D006926 3.5e-92 342.0 241 78.0
GSVIVG01038606001 Vitis vinifera HOM05D005634 ORTHO05D006926 1.7e-91 339.7 233 75.5
Lalb_Chr08g0239991 Lupinus albus HOM05D005634 ORTHO05D006926 1.5e-90 336.7 235 74.9
arahy.Tifrunner.gnm1.ann1.P45MK1 Arachis hypogaea HOM05D005634 ORTHO05D006926 4.3e-90 335.1 230 75.2
CsaV3_3G019650 Cucumis sativus L. HOM05D005634 ORTHO05D006926 1.2e-89 333.6 229 76.9
arahy.Tifrunner.gnm1.ann1.WWF9U9 Arachis hypogaea HOM05D005634 ORTHO05D006926 1.6e-89 333.2 230 74.8
MELO3C019382.2 Cucumis melo HOM05D005634 ORTHO05D006926 2.1e-89 332.8 229 76.9
Manes.01G037500 Manihot esculenta HOM05D005634 ORTHO05D006926 2.1e-89 332.8 231 75.8
Potri.015G008000 Populus trichocarpa HOM05D005634 ORTHO05D006926 2.8e-89 332.4 219 79.0
Potri.012G020700 Populus trichocarpa HOM05D005634 ORTHO05D006926 3.6e-89 332.0 239 74.1
Phvul.009G048400 Phaseolus vulgaris HOM05D005634 ORTHO05D006926 1.8e-88 329.7 226 76.1
CiPaw.05G201100 Carya illinoinensis HOM05D005634 ORTHO05D006926 2.3e-88 329.3 229 75.5
Lj1g0021546 Lotus japonicus HOM05D005634 ORTHO05D006926 3.0e-88 328.9 235 74.0
Sabra15G0006100 Salix brachista HOM05D005634 ORTHO05D006926 3.0e-88 328.9 249 73.1
vmacro10142 Vaccinium macrocarpon HOM05D005634 ORTHO05D006926 6.8e-88 327.8 239 72.0
RcHm_v2.0_Chr1g0381981 Rosa chinensis HOM05D005634 ORTHO05D006926 8.9e-88 327.4 186 91.9
Cfa016192 Carpinus fangiana HOM05D005634 ORTHO05D006926 1.2e-87 327.0 240 73.3
Glyma.04G232400 Glycine max HOM05D005634 ORTHO05D006926 1.2e-87 327.0 235 73.2
CSS0047779 Camellia sinensis var. sinensis HOM05D005634 ORTHO05D006926 1.5e-87 326.6 230 73.9
Duzib084G0100 Durio zibethinus HOM05D005634 ORTHO05D006926 1.5e-87 326.6 229 74.2
Eucgr.K00410 Eucalyptus grandis HOM05D005634 ORTHO05D006926 2.6e-87 325.9 241 71.8
CANSAT21G2451 Cannabis sativa HOM05D005634 ORTHO05D006926 4.4e-87 325.1 242 73.6
Lalb_Chr11g0067121 Lupinus albus HOM05D005634 ORTHO05D006926 4.4e-87 325.1 235 71.1
VMungo1309G1289 Vigna mungo HOM05D005634 ORTHO05D006926 7.5e-87 324.3 221 74.7
Ca_16737_v3 Cicer arietinum L. HOM05D005634 ORTHO05D006926 9.8e-87 323.9 221 74.2
Glyma.06G132600 Glycine max HOM05D005634 ORTHO05D006926 1.3e-86 323.6 235 72.3
Sed0004447 Sechium edule HOM05D005634 ORTHO05D006926 1.3e-86 323.6 230 75.2
Thecc.03G204700 Theobroma cacao HOM05D005634 ORTHO05D006926 1.3e-86 323.6 239 72.4
Sabra05G0139500 Salix brachista HOM05D005634 ORTHO05D006926 2.2e-86 322.8 242 72.7
Sabra12G0012500 Salix brachista HOM05D005634 ORTHO05D006926 2.2e-86 322.8 250 70.8
PGR142G2679 Punica granatum HOM05D005634 ORTHO05D006926 3.7e-86 322.0 240 71.7
Actinidia18672 Actinidia chinensis HOM05D005634 ORTHO05D006926 8.3e-86 320.9 236 72.5
Aqoxy5G04258 Aquilegia oxysepala HOM05D005634 ORTHO05D006926 8.3e-86 320.9 233 74.7
Oeu037042.1 Olea europaea HOM05D005634 ORTHO05D006926 8.3e-86 320.9 233 73.4
TWI39G0994 Tripterygium wilfordii HOM05D005634 ORTHO05D006926 1.8e-85 319.7 241 69.3
Glyma.14G118100 Glycine max HOM05D005634 ORTHO05D006926 2.4e-85 319.3 232 70.7
CDE09G0596 Ceratophyllum demersum HOM05D005634 ORTHO05D006926 3.2e-85 318.9 192 81.2
Ciclev10021946m.g Citrus clementina HOM05D005634 ORTHO05D006926 3.2e-85 318.9 241 72.2
Gohir.D08G113300 Gossypium hirsutum HOM05D005634 ORTHO05D006926 9.2e-85 317.4 239 72.0
Psat5g074680 Pisum sativum HOM05D005634 ORTHO05D006926 9.2e-85 317.4 220 73.2
Oeu061008.1 Olea europaea HOM05D005634 ORTHO05D006926 1.6e-84 316.6 233 72.1
COL.COLO4_16824 Corchorus olitorius HOM05D005634 ORTHO05D006926 2.0e-84 316.2 237 70.9
Gorai.004G122200 Gossypium raimondii HOM05D005634 ORTHO05D006926 7.8e-84 314.3 240 72.1
Gohir.A08G102100 Gossypium hirsutum HOM05D005634 ORTHO05D006926 1.7e-83 313.2 239 70.7
SGA_v2.0_scaffold18G08443 Striga asiatica HOM05D002361 ORTHO05D006926 3.9e-83 312.0 206 75.7
Lsat_1_v5_gn_8_5560 Lactuca sativa HOM05D005634 ORTHO05D006926 5.0e-83 311.6 241 66.8
Migut.F00174 Erythranthe guttata HOM05D005634 ORTHO05D006926 1.1e-82 310.5 230 71.7
ECA233G0867 Erigeron canadensis HOM05D005634 ORTHO05D006926 1.5e-82 310.1 242 66.5
AUR62035571 Chenopodium quinoa HOM05D005634 ORTHO05D006926 1.9e-82 309.7 236 70.3
EL10Ac3g05237 Beta vulgaris HOM05D005634 ORTHO05D006926 2.5e-82 309.3 237 70.0
Solyc06g053140.3 Solanum lycopersicum HOM05D005634 ORTHO05D006926 2.5e-82 309.3 238 70.2
unitig_0.g1985 Utricularia gibba HOM05D005634 ORTHO05D006926 2.5e-82 309.3 229 69.9
AUR62006058 Chenopodium quinoa HOM05D005634 ORTHO05D006926 1.2e-81 307.0 237 69.2
Sopen06g018200 Solanum pennellii HOM05D005634 ORTHO05D006926 1.6e-81 306.6 238 69.3
HanXRQChr06g0175631 Helianthus annuus HOM05D005634 ORTHO05D006926 2.1e-81 306.2 239 68.2
MBI12_g30967_MAGBIO Magnolia biondii HOM05D005634 ORTHO05D006926 2.1e-81 306.2 178 82.6
PGSC0003DMG400005464 Solanum tuberosum HOM05D005634 ORTHO05D006926 2.1e-81 306.2 237 67.9
Medtr3g092040 Medicago truncatula HOM05D005634 ORTHO05D006926 3.6e-81 305.4 203 74.4
Nn1g00367 Nelumbo nucifera HOM05D005634 ORTHO05D006926 4.7e-81 305.1 224 72.8
PSO782G0763 Papaver somniferum HOM05D005634 ORTHO05D006926 4.7e-81 305.1 234 69.7
Peaxi162Scf00618g00219 Petunia axillaris HOM05D005634 ORTHO05D006926 6.2e-81 304.7 235 68.5
TAR629G3370 Trochodendron aralioides HOM05D005634 ORTHO05D006926 6.2e-81 304.7 230 70.4
Cpa.g.sc3.123 Carica papaya HOM05D005634 ORTHO05D006926 8.0e-81 304.3 238 68.5
DCAR_014553 Daucus carota HOM05D005634 ORTHO05D006926 8.0e-81 304.3 241 66.4
FvH4_7g32420 Fragaria vesca HOM05D005634 ORTHO05D006926 8.0e-81 304.3 158 98.1
MSTRG.27003 Avicennia marina HOM05D005634 ORTHO05D006926 1.1e-80 303.9 229 68.6
Nitab4.5_0000015g0180 Nicotiana tabacum HOM05D005634 ORTHO05D006926 2.3e-80 302.8 236 68.6
Nitab4.5_0001829g0010 Nicotiana tabacum HOM05D005634 ORTHO05D006926 3.1e-80 302.4 238 68.1
Os09g0530000 Oryza sativa ssp. japonica HOM05D005634 ORTHO05D006926 3.1e-80 302.4 206 72.8
Ah.07g205160 Amaranthus hybridus HOM05D005634 ORTHO05D006926 6.8e-80 301.2 237 67.9
ATR0620G015 Amborella trichopoda HOM05D005634 ORTHO05D006926 1.2e-79 300.4 181 81.2
Rhsim09G0207900 Rhododendron simsii HOM05D005634 ORTHO05D006926 1.2e-79 300.4 258 65.5
Carub.0007s1312 Capsella rubella HOM05D005634 ORTHO05D006926 2.6e-79 299.3 230 68.7
Sc25g0000970 Simmondsia chinensis HOM05D005634 ORTHO05D006926 2.6e-79 299.3 225 67.6
Cc02_g01130 Coffea canephora HOM05D005634 ORTHO05D006926 3.4e-79 298.9 244 66.0
CDE11G0057 Ceratophyllum demersum HOM05D005634 ORTHO05D006926 7.5e-79 297.7 166 86.1
Haze_00263 Corylus avellana HOM05D005634 ORTHO05D006926 1.3e-78 297.0 165 88.5
Lj3A901T75 Lonicera japonica HOM05D005634 ORTHO05D006926 2.2e-78 296.2 166 86.1
CAN.G414.9 Capsicum annuum HOM05D005634 ORTHO05D006926 2.9e-78 295.8 234 66.7
Aa31LG11G15270 Aethionema arabicum HOM05D005634 ORTHO05D006926 1.9e-77 293.1 227 67.0
Thhalv10026171m.g Eutrema salsugineum HOM05D005634 ORTHO05D006926 3.5e-76 288.9 230 65.7
AL7G24960 Arabidopsis lyrata HOM05D005634 ORTHO05D006926 4.6e-76 288.5 226 67.3
THA.LOC104799954 Tarenaya hassleriana HOM05D005634 ORTHO05D006926 4.6e-76 288.5 234 65.8
SalBow4G1390 Salvia bowleyana HOM05D005634 ORTHO05D006926 6.0e-76 288.1 165 84.2
BcaC09g50547 Brassica carinata HOM05D005634 ORTHO05D006926 7.8e-76 287.7 236 65.3
C01p24050 Brassica napus HOM05D005634 ORTHO05D006926 7.8e-76 287.7 236 65.3
BolC1t02361H Brassica oleracea HOM05D005634 ORTHO05D006926 7.8e-76 287.7 236 65.3
BcaNung01637 Brassica carinata HOM05D005634 ORTHO05D006926 1.0e-75 287.3 236 64.8
ClCG05G009130 Citrullus lanatus HOM05D005634 ORTHO05D006926 1.0e-75 287.3 238 68.5
BraA01t01856Z Brassica rapa HOM05D005634 ORTHO05D006926 1.3e-75 287.0 232 66.4
AT4G27700 Arabidopsis thaliana HOM05D005634 ORTHO05D006926 1.7e-75 286.6 230 66.1
CARHR235430 Cardamine hirsuta HOM05D005634 ORTHO05D006926 4.7e-73 278.5 238 63.4
Sp7g25680 Schrenkiella parvula HOM05D005634 ORTHO05D006926 7.1e-69 264.6 229 65.1
Hund21024 Selenicereus undatus HOM05D005634 ORTHO05D006926 1.7e-67 260.0 303 50.8
SEGI_37163 Sequoiadendron giganteum HOM05D005634 ORTHO05D006926 1.6e-65 253.4 181 68.0
Mapoly0050s0021 Marchantia polymorpha HOM05D005634 ORTHO05D006926 5.2e-64 248.4 186 66.7
AagrBONN_evm.TU.Sc2ySwM_344.430 Anthoceros agrestis HOM05D005634 ORTHO05D006926 8.4e-62 241.1 199 61.8
SMO141G0293 Selaginella moellendorffii HOM05D005634 ORTHO05D006926 1.1e-61 240.7 185 63.8
A01p19140 Brassica napus HOM05D005634 ORTHO05D006926 5.2e-56 221.9 194 64.4
Dinv29241 Davidia involucrata HOM05D005634 ORTHO05D006926 4.4e-55 218.8 182 67.0
Pp3c15_4960 Physcomitrium patens HOM05D005634 ORTHO05D006926 1.3e-54 217.2 178 59.6
Zm00001eb319210 Zea mays HOM05D005634 ORTHO05D006926 7.6e-47 191.4 155 65.8
CBR_g3780 Chara braunii HOM05D005634 ORTHO05D006926 9.9e-47 191.0 172 55.8
HPP92_002499 Vanilla planifolia HOM05D005634 ORTHO05D006926 6.0e-44 181.8 108 76.9
Dinv35363 Davidia involucrata HOM05D005634 ORTHO05D006926 1.9e-42 176.8 166 61.4
TPR.G33661 Trifolium pratense HOM05D005634 ORTHO05D006926 3.8e-38 162.5 179 53.6
BcaC03g17858 Brassica carinata HOM05D005634 ORTHO05D006926 4.8e-33 145.6 113 61.9
A07p23910 Brassica napus HOM05D005634 ORTHO05D006926 1.6e-28 130.6 86 70.9
BraA10t44343Z Brassica rapa HOM05D005634 ORTHO05D006926 1.6e-28 130.6 86 70.9
Cre16.g650050 Chlamydomonas reinhardtii HOM05D005634 ORTHO05D006926 1.0e-27 127.9 144 41.0
BcaC01g00747 Brassica carinata HOM05D005634 ORTHO05D006926 7.6e-23 111.7 70 71.4
Hma1.2p1_0512F.1_g169290 Hydrangea macrophylla HOM05D005634 ORTHO05D006926 7.6e-23 111.7 124 57.3
FAN10G2388 Fragaria x ananassa HOM05D005634 ORTHO05D006926 5.0e-22 109.0 66 84.8
Cre01.g003550 Chlamydomonas reinhardtii HOM05D005634 ORTHO05D006926 7.9e-20 101.7 196 36.2
AagrBONN_evm.TU.Sc2ySwM_362.2890 Anthoceros agrestis HOM05D005634 ORTHO05D006926 1.5e-18 97.4 175 36.0
Cre02.g111450 Chlamydomonas reinhardtii HOM05D005634 ORTHO05D006926 1.7e-17 94.0 185 33.0
Mapoly0035s0022 Marchantia polymorpha HOM05D005634 ORTHO05D006926 9.1e-16 88.2 177 29.9
CBR_g51265 Chara braunii HOM05D005634 ORTHO05D006926 7.7e-15 85.1 143 37.1
MCO07G297 Micromonas commoda HOM05D005634 ORTHO05D006926 2.1e-12 77.0 159 30.2
C03p83850 Brassica napus HOM05D005634 ORTHO05D006926 7.4e-10 68.6 57 59.6
C09p11080 Brassica napus HOM05D005634 ORTHO05D006926 7.4e-10 68.6 57 59.6
BolC3t20661H Brassica oleracea HOM05D005634 ORTHO05D006926 7.4e-10 68.6 57 59.6
C02p59000 Brassica napus HOM05D005634 ORTHO05D006926 1.3e-09 67.8 57 57.9
BolC2t11955H Brassica oleracea HOM05D005634 ORTHO05D006926 1.3e-09 67.8 57 57.9
Mapoly0042s0113 Marchantia polymorpha HOM05D002957 ORTHO05D007941 1.8e-08 63.9 185 30.3
Aqoxy2G00881 Aquilegia oxysepala HOM05D002957 ORTHO05D009332 3.1e-08 63.2 172 27.9
Lsat_1_v5_gn_5_63360 Lactuca sativa HOM05D001743 ORTHO05D001685 4.1e-08 62.8 152 28.9
Rhsim03G0009200 Rhododendron simsii HOM05D006381 ORTHO05D008523 4.1e-08 62.8 161 31.1
Lj1g0008226 Lotus japonicus HOM05D006381 ORTHO05D008523 5.3e-08 62.4 150 30.7
Oeu038757.1 Olea europaea HOM05D001743 ORTHO05D001685 7.0e-08 62.0 127 30.7
PSO339G4196 Papaver somniferum HOM05D002957 ORTHO05D009332 7.0e-08 62.0 147 27.9
Actinidia11584 Actinidia chinensis HOM05D002957 ORTHO05D009332 1.5e-07 60.8 155 29.0
Potri.006G100600 Populus trichocarpa HOM05D002957 ORTHO05D009332 2.0e-07 60.5 186 28.5
CANSAT35G0815 Cannabis sativa HOM05D002957 ORTHO05D009332 3.4e-07 59.7 190 29.5
DCAR_024020 Daucus carota HOM05D002957 ORTHO05D009332 3.4e-07 59.7 155 29.7
PGR004G1270 Punica granatum HOM05D002957 ORTHO05D009332 5.9e-07 58.9 163 28.8
Cfa019259 Carpinus fangiana HOM05D002957 ORTHO05D007941 7.7e-07 58.5 188 27.7
vmacro07936 Vaccinium macrocarpon HOM05D006381 ORTHO05D008523 1.0e-06 58.2 109 33.0
arahy.Tifrunner.gnm1.ann1.A2UBGC Arachis hypogaea HOM05D002957 ORTHO05D009332 1.3e-06 57.8 172 30.2
Cre13.g602650 Chlamydomonas reinhardtii HOM05D002957 ORTHO05D007941 1.3e-06 57.8 186 29.6
Lsat_1_v5_gn_3_70661 Lactuca sativa HOM05D001743 ORTHO05D001685 1.3e-06 57.8 127 31.5
Lalb_Chr07g0193601 Lupinus albus HOM05D002957 ORTHO05D009332 1.3e-06 57.8 155 29.0
Aa31LG7G11100 Aethionema arabicum HOM05D002957 ORTHO05D007941 1.7e-06 57.4 156 32.7
CAN.G890.20 Capsicum annuum HOM05D001743 ORTHO05D001685 1.7e-06 57.4 144 30.6
MELO3C009019.2 Cucumis melo HOM05D006381 ORTHO05D008523 2.2e-06 57.0 151 27.2
Duzib147G0960 Durio zibethinus HOM05D001743 ORTHO05D001685 2.2e-06 57.0 126 30.2
Lj3g0019800 Lotus japonicus HOM05D002957 ORTHO05D009332 2.2e-06 57.0 147 29.9
Pp3c5_3150 Physcomitrium patens HOM05D005634 ORTHO05D006926 2.2e-06 57.0 174 26.4
Prupe.5G163400 Prunus persica HOM05D002957 ORTHO05D007941 2.2e-06 57.0 235 27.7
vmacro20279 Vaccinium macrocarpon HOM05D002957 ORTHO05D009332 2.2e-06 57.0 155 28.4
arahy.Tifrunner.gnm1.ann1.45VXZT Arachis hypogaea HOM05D001743 ORTHO05D001685 2.9e-06 56.6 149 28.2
arahy.Tifrunner.gnm1.ann1.Z0DP5C Arachis hypogaea HOM05D002957 ORTHO05D009332 2.9e-06 56.6 172 29.7
BraA01t01541Z Brassica rapa HOM05D000434 ORTHO05D001445 2.9e-06 56.6 156 32.1
CANSAT64G2218 Cannabis sativa HOM05D006381 ORTHO05D008523 2.9e-06 56.6 193 27.5
CsaV3_4G031300 Cucumis sativus L. HOM05D006381 ORTHO05D008523 2.9e-06 56.6 151 27.2
Dinv38506 Davidia involucrata HOM05D002957 ORTHO05D007941 2.9e-06 56.6 166 28.9
Medtr4g015860 Medicago truncatula HOM05D002957 ORTHO05D009332 2.9e-06 56.6 155 29.0
Phvul.010G000900 Phaseolus vulgaris HOM05D002957 ORTHO05D009332 2.9e-06 56.6 192 29.2
vmacro22887 Vaccinium macrocarpon HOM05D002957 ORTHO05D007941 2.9e-06 56.6 221 26.2
CARHR232120 Cardamine hirsuta HOM05D002957 ORTHO05D007941 3.8e-06 56.2 158 31.0
Glyma.19G145800 Glycine max HOM05D006381 ORTHO05D008523 3.8e-06 56.2 157 28.7
Manes.08G092300 Manihot esculenta HOM05D002957 ORTHO05D009332 3.8e-06 56.2 155 27.1
Pp3c6_20980 Physcomitrium patens HOM05D002957 ORTHO05D007941 3.8e-06 56.2 198 26.8
Hund19189 Selenicereus undatus HOM05D006381 ORTHO05D008523 3.8e-06 56.2 147 28.6
AUR62022097 Chenopodium quinoa HOM05D002957 ORTHO05D007941 5.0e-06 55.8 166 28.9
Thhalv10025885m.g Eutrema salsugineum HOM05D002957 ORTHO05D007941 5.0e-06 55.8 156 31.4
Manes.08G046500 Manihot esculenta HOM05D006381 ORTHO05D008523 5.0e-06 55.8 149 27.5
PRCOL_00004996 Prasinoderma coloniale HOM05D005634 ORTHO05D006926 5.0e-06 55.8 168 28.6
EL10Ac7g18022 Beta vulgaris HOM05D002957 ORTHO05D007941 6.5e-06 55.5 166 30.1
CANSAT64G0317 Cannabis sativa HOM05D001743 ORTHO05D001685 6.5e-06 55.5 123 31.7
Nn5g30867 Nelumbo nucifera HOM05D001743 ORTHO05D001685 6.5e-06 55.5 145 29.0
Rhsim12G0169500 Rhododendron simsii HOM05D002957 ORTHO05D007941 6.5e-06 55.5 213 28.2
PGSC0003DMG400003666 Solanum tuberosum HOM05D001743 ORTHO05D001685 6.5e-06 55.5 145 29.0
vmacro23142 Vaccinium macrocarpon HOM05D002957 ORTHO05D007941 6.5e-06 55.5 209 27.3
AL3G50890 Arabidopsis lyrata HOM05D001743 ORTHO05D001685 8.5e-06 55.1 156 26.9
Ciclev10012632m.g Citrus clementina HOM05D006381 ORTHO05D008523 8.5e-06 55.1 148 27.7
ECA247G3115 Erigeron canadensis HOM05D006381 ORTHO05D008523 8.5e-06 55.1 196 27.6
FAN18G4082 Fragaria x ananassa HOM05D000025 ORTHO05D007941 8.5e-06 55.1 242 27.3


User provided reference genes

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