Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN01G0923 Fragaria x ananassa HOM05D006240 ORTHO05D007709 2.7e-193 678.7 400 100.0
FAN10G2738 Fragaria x ananassa HOM05D006240 ORTHO05D007709 9.2e-133 477.6 343 89.2
FAN03G2060 Fragaria x ananassa HOM05D006240 ORTHO05D007709 1.2e-127 460.7 333 89.2
FvH4_7g11300 Fragaria vesca HOM05D006240 ORTHO05D007709 2.4e-117 426.4 333 85.0
FAN06G3720 Fragaria x ananassa HOM05D006240 ORTHO05D007709 1.1e-101 374.4 241 85.9
RcHm_v2.0_Chr1g0349471 Rosa chinensis HOM05D006240 ORTHO05D007709 1.1e-101 374.4 328 75.9
RcHm_v2.0_Chr7g0215611 Rosa chinensis HOM05D006240 ORTHO05D007709 3.1e-96 356.3 309 77.7
FAN10G3076 Fragaria x ananassa HOM05D006240 ORTHO05D007709 1.3e-83 314.3 245 88.2
MD07G1117600 Malus domestica HOM05D006240 ORTHO05D007709 5.5e-69 265.8 194 70.6
Prupe.2G140800 Prunus persica HOM05D006240 ORTHO05D007709 1.3e-65 254.6 195 68.7
MD02G1098700 Malus domestica HOM05D006240 ORTHO05D007709 4.6e-60 236.1 194 65.5
QL02p015120 Quercus lobata HOM05D006240 ORTHO05D007709 1.7e-46 191.0 212 55.2
Hma1.2p1_0612F.1_g188890 Hydrangea macrophylla HOM05D006240 ORTHO05D007709 2.5e-45 187.2 217 53.9
CiPaw.08G075400 Carya illinoinensis HOM05D006240 ORTHO05D007709 2.1e-44 184.1 223 51.6
TAR376G0245 Trochodendron aralioides HOM05D006240 ORTHO05D007709 7.9e-44 182.2 223 55.2
TAR628G0625 Trochodendron aralioides HOM05D006240 ORTHO05D007709 1.8e-43 181.0 229 53.3
Ciclev10002499m.g Citrus clementina HOM05D006240 ORTHO05D007709 3.3e-42 176.8 188 56.9
Dinv31964 Davidia involucrata HOM05D006240 ORTHO05D007709 7.4e-42 175.6 225 50.2
Nn5g31000 Nelumbo nucifera HOM05D006240 ORTHO05D007709 7.4e-42 175.6 231 50.2
THA.LOC104811476 Tarenaya hassleriana HOM05D006240 ORTHO05D007709 7.4e-42 175.6 191 53.9
CANSAT56G3734 Cannabis sativa HOM05D006240 ORTHO05D007709 1.3e-41 174.9 193 57.0
GSVIVG01013393001 Vitis vinifera HOM05D006240 ORTHO05D007709 1.3e-41 174.9 211 50.2
Nn4g24539 Nelumbo nucifera HOM05D006240 ORTHO05D007709 3.1e-40 170.2 204 53.9
PGR031G1135 Punica granatum HOM05D006240 ORTHO05D007709 3.1e-40 170.2 192 53.1
COL.COLO4_07215 Corchorus olitorius HOM05D006240 ORTHO05D007709 5.3e-40 169.5 186 58.1
MBI05_g33294_MAGBIO Magnolia biondii HOM05D006240 ORTHO05D007709 5.3e-40 169.5 199 55.3
AL1G33760 Arabidopsis lyrata HOM05D006240 ORTHO05D007709 9.1e-40 168.7 215 49.3
Aa31LG7G4930 Aethionema arabicum HOM05D006240 ORTHO05D007709 1.6e-39 167.9 204 51.5
Thecc.08G062400 Theobroma cacao HOM05D006240 ORTHO05D007709 1.6e-39 167.9 193 54.4
BcaB03g12855 Brassica carinata HOM05D006240 ORTHO05D007709 5.9e-39 166.0 215 50.2
CSS0005151 Camellia sinensis var. sinensis HOM05D006240 ORTHO05D007709 7.7e-39 165.6 206 49.5
BcaC07g39051 Brassica carinata HOM05D006240 ORTHO05D007709 1.0e-38 165.2 192 52.1
EL10Ac4g09545 Beta vulgaris HOM05D006240 ORTHO05D007709 1.3e-38 164.9 191 51.3
Lj4C7G6 Lonicera japonica HOM05D006240 ORTHO05D007709 1.3e-38 164.9 243 47.3
CARHR021210 Cardamine hirsuta HOM05D006240 ORTHO05D007709 1.7e-38 164.5 211 48.8
MSTRG.24503 Avicennia marina HOM05D006240 ORTHO05D007709 2.2e-38 164.1 194 52.1
AT1G20770 Arabidopsis thaliana HOM05D006240 ORTHO05D007709 2.9e-38 163.7 218 48.2
C08p20350 Brassica napus HOM05D006240 ORTHO05D007709 2.9e-38 163.7 195 50.8
Gorai.002G114700 Gossypium raimondii HOM05D006240 ORTHO05D007709 3.8e-38 163.3 199 53.8
BcaB03g14301 Brassica carinata HOM05D006240 ORTHO05D007709 6.5e-38 162.5 216 49.5
Sp1g18470 Schrenkiella parvula HOM05D006240 ORTHO05D007709 6.5e-38 162.5 214 49.5
Thhalv10008759m.g Eutrema salsugineum HOM05D006240 ORTHO05D007709 8.5e-38 162.2 219 48.4
BolC8t49663H Brassica oleracea HOM05D006240 ORTHO05D007709 1.1e-37 161.8 199 49.7
Ca_15403_v3 Cicer arietinum L. HOM05D006240 ORTHO05D007709 1.1e-37 161.8 176 52.3
Ca_29886_v3 Cicer arietinum L. HOM05D006240 ORTHO05D007709 1.1e-37 161.8 176 52.3
A08p29270 Brassica napus HOM05D006240 ORTHO05D007709 1.5e-37 161.4 191 53.4
Psat5g009800 Pisum sativum HOM05D006240 ORTHO05D007709 1.5e-37 161.4 176 52.8
CsaV3_4G037430 Cucumis sativus L. HOM05D006240 ORTHO05D007709 1.9e-37 161.0 194 53.1
PSO210G3458 Papaver somniferum HOM05D006240 ORTHO05D007709 2.5e-37 160.6 199 52.3
Gohir.D01G089000 Gossypium hirsutum HOM05D006240 ORTHO05D007709 4.2e-37 159.8 213 50.7
BolC7t42820H Brassica oleracea HOM05D006240 ORTHO05D007709 5.5e-37 159.5 193 50.8
BraA08t34862Z Brassica rapa HOM05D006240 ORTHO05D007709 5.5e-37 159.5 207 49.3
AUR62042908 Chenopodium quinoa HOM05D006240 ORTHO05D007709 7.2e-37 159.1 192 49.5
Manes.13G069200 Manihot esculenta HOM05D006240 ORTHO05D007709 7.2e-37 159.1 235 45.5
Sabra05G0196300 Salix brachista HOM05D006240 ORTHO05D007709 7.2e-37 159.1 222 49.1
Carub.0001s2022 Capsella rubella HOM05D006240 ORTHO05D007709 1.2e-36 158.3 221 47.5
Duzib041G0618 Durio zibethinus HOM05D006240 ORTHO05D007709 1.2e-36 158.3 217 49.8
Potri.005G253101 Populus trichocarpa HOM05D006240 ORTHO05D007709 1.6e-36 157.9 193 51.8
AUR62035138 Chenopodium quinoa HOM05D006240 ORTHO05D007709 3.6e-36 156.8 191 49.2
Atru.chr9.2231 Acer truncatum HOM05D006240 ORTHO05D007709 8.0e-36 155.6 182 51.1
BcaC06g34834 Brassica carinata HOM05D006240 ORTHO05D007709 1.0e-35 155.2 193 50.8
C07p22820 Brassica napus HOM05D006240 ORTHO05D007709 1.0e-35 155.2 193 50.8
MELO3C017040.2 Cucumis melo HOM05D006240 ORTHO05D007709 1.0e-35 155.2 194 50.0
unitig_578.g16237 Utricularia gibba HOM05D006240 ORTHO05D007709 1.0e-35 155.2 190 51.1
vmacro21788 Vaccinium macrocarpon HOM05D006240 ORTHO05D007709 1.4e-35 154.8 230 47.0
Actinidia15507 Actinidia chinensis HOM05D006240 ORTHO05D007709 1.8e-35 154.5 202 48.0
A07p15490 Brassica napus HOM05D006240 ORTHO05D007709 3.0e-35 153.7 190 50.5
BraA07t29290Z Brassica rapa HOM05D006240 ORTHO05D007709 3.0e-35 153.7 190 51.1
Rhsim06G0005200 Rhododendron simsii HOM05D006240 ORTHO05D007709 3.0e-35 153.7 224 46.4
Sed0018366 Sechium edule HOM05D006240 ORTHO05D007709 4.0e-35 153.3 227 47.1
Glyma.19G151500 Glycine max HOM05D006240 ORTHO05D007709 5.2e-35 152.9 181 49.7
Sopen02g032680 Solanum pennellii HOM05D006240 ORTHO05D007709 8.8e-35 152.1 193 49.2
TPR.G38126 Trifolium pratense HOM05D006240 ORTHO05D007709 1.2e-34 151.8 184 48.9
Aqoxy5G00997 Aquilegia oxysepala HOM05D006240 ORTHO05D007709 2.0e-34 151.0 197 49.2
Lj1g0026125 Lotus japonicus HOM05D006240 ORTHO05D007709 2.0e-34 151.0 211 46.4
PSO170G2591 Papaver somniferum HOM05D006240 ORTHO05D007709 5.7e-34 149.4 188 50.5
TWI36G0187 Tripterygium wilfordii HOM05D006240 ORTHO05D007709 5.7e-34 149.4 226 44.7
Actinidia17059 Actinidia chinensis HOM05D006240 ORTHO05D007709 7.5e-34 149.1 222 44.1
Haze_22830 Corylus avellana HOM05D006240 ORTHO05D007709 7.5e-34 149.1 171 54.4
CAN.G206.149 Capsicum annuum HOM05D006240 ORTHO05D007709 9.7e-34 148.7 204 45.6
Lsat_1_v5_gn_2_1920 Lactuca sativa HOM05D006240 ORTHO05D007709 9.7e-34 148.7 164 52.4
Cc04_g09300 Coffea canephora HOM05D006240 ORTHO05D007709 1.3e-33 148.3 212 44.8
Glyma.03G148200 Glycine max HOM05D006240 ORTHO05D007709 1.3e-33 148.3 202 45.5
Nitab4.5_0006318g0100 Nicotiana tabacum HOM05D006240 ORTHO05D007709 1.3e-33 148.3 192 48.4
Peaxi162Scf00129g00239 Petunia axillaris HOM05D006240 ORTHO05D007709 1.7e-33 147.9 197 47.2
SalBow6G2548 Salvia bowleyana HOM05D006240 ORTHO05D007709 2.2e-33 147.5 198 47.5
PGSC0003DMG400001324 Solanum tuberosum HOM05D006240 ORTHO05D007709 2.8e-33 147.1 226 43.4
SGA_v2.0_scaffold54G19646 Striga asiatica HOM05D006240 ORTHO05D007709 2.8e-33 147.1 202 48.5
Nitab4.5_0000564g0070 Nicotiana tabacum HOM05D006240 ORTHO05D007709 3.7e-33 146.7 199 46.7
Migut.M00585 Erythranthe guttata HOM05D006240 ORTHO05D007709 6.3e-33 146.0 192 46.9
Ah.00g001020 Amaranthus hybridus HOM05D006240 ORTHO05D007709 8.2e-33 145.6 185 46.5
Migut.M00223 Erythranthe guttata HOM05D006240 ORTHO05D007709 1.1e-32 145.2 188 46.3
Os04g0509200 Oryza sativa ssp. japonica HOM05D006240 ORTHO05D007709 1.4e-32 144.8 212 44.8
Phvul.001G146200 Phaseolus vulgaris HOM05D006240 ORTHO05D007709 1.8e-32 144.4 172 48.3
DCAR_020858 Daucus carota HOM05D001217 ORTHO05D007709 2.4e-32 144.1 201 45.8
ECA232G5059 Erigeron canadensis HOM05D006240 ORTHO05D007709 3.1e-32 143.7 230 41.7
Migut.N02969 Erythranthe guttata HOM05D006240 ORTHO05D007709 9.1e-32 142.1 192 46.4
Lalb_Chr11g0061501 Lupinus albus HOM05D006240 ORTHO05D007709 9.1e-32 142.1 176 47.7
Hund05091 Selenicereus undatus HOM05D006240 ORTHO05D007709 9.1e-32 142.1 187 50.8
VMungo1383G1920 Vigna mungo HOM05D006240 ORTHO05D007709 9.1e-32 142.1 171 49.1
Medtr3g115650 Medicago truncatula HOM05D006240 ORTHO05D007709 1.6e-31 141.4 205 43.9
CDE04G0018 Ceratophyllum demersum HOM05D006240 ORTHO05D007709 2.7e-31 140.6 191 48.7
HanXRQChr16g0516421 Helianthus annuus HOM05D006240 ORTHO05D007709 1.0e-30 138.7 204 43.6
HPP92_012646 Vanilla planifolia HOM05D006240 ORTHO05D007709 5.0e-30 136.3 190 45.8
Gohir.A01G103700 Gossypium hirsutum HOM05D006240 ORTHO05D007709 6.5e-30 136.0 164 54.3
ClCG11G018840 Citrullus lanatus HOM05D006240 ORTHO05D007709 1.1e-29 135.2 270 38.1
Cfa014112 Carpinus fangiana HOM05D006240 ORTHO05D007709 4.2e-29 133.3 173 50.9
Sc15g0004230 Simmondsia chinensis HOM05D006240 ORTHO05D007709 6.1e-28 129.4 172 47.7
arahy.Tifrunner.gnm1.ann1.MR2FC0 Arachis hypogaea HOM05D006240 ORTHO05D007709 1.8e-24 117.9 179 41.9
Eucgr.K03289 Eucalyptus grandis HOM05D006240 ORTHO05D007709 9.1e-24 115.5 240 37.5
Atru.chr3.2559 Acer truncatum HOM05D006240 ORTHO05D007709 6.8e-19 99.4 182 40.7
arahy.Tifrunner.gnm1.ann1.W2HKS7 Arachis hypogaea HOM05D006240 ORTHO05D007709 6.8e-19 99.4 147 40.8
Solyc02g087940.4 Solanum lycopersicum HOM05D006240 ORTHO05D007709 1.1e-16 92.0 169 40.2
SGA_v2.0_scaffold54G19644 Striga asiatica HOM05D006240 ORTHO05D007709 1.2e-15 88.6 277 31.8
Zm00001eb077760 Zea mays HOM05D006240 ORTHO05D007709 5.9e-15 86.3 92 54.3
ATR0807G014 Amborella trichopoda HOM05D006240 ORTHO05D007709 1.3e-14 85.1 106 50.9
Phvul.009G075200 Phaseolus vulgaris HOM05D006240 ORTHO05D007709 3.8e-14 83.6 96 46.9
Atru.chr9.2243 Acer truncatum HOM05D006240 ORTHO05D007709 5.0e-14 83.2 81 55.6
Pp3c17_23460 Physcomitrium patens HOM05D006240 ORTHO05D007709 2.1e-12 77.8 201 33.8
FAN06G4434 Fragaria x ananassa HOM05D006240 ORTHO05D007709 2.2e-09 67.8 40 80.0
Mapoly0189s0009 Marchantia polymorpha HOM05D006240 ORTHO05D007709 2.9e-09 67.4 222 27.9
SEGI_19917 Sequoiadendron giganteum HOM05D006240 ORTHO05D007709 1.4e-08 65.1 89 42.7
SEGI_13318 Sequoiadendron giganteum HOM05D006240 ORTHO05D007709 1.6e-07 61.6 63 52.4
CBR_g41721 Chara braunii HOM05D006240 ORTHO05D007709 1.0e-06 58.9 220 29.5


User provided reference genes

Program Settings