Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN01G0847 Fragaria x ananassa HOM05D005135 ORTHO05D005810 1.2e-130 469.9 251 100.0
FAN10G2880 Fragaria x ananassa HOM05D005135 ORTHO05D005810 3.9e-121 438.3 286 86.0
FAN03G3482 Fragaria x ananassa HOM05D005135 ORTHO05D005810 6.4e-116 421.0 253 92.1
FAN06G3133 Fragaria x ananassa HOM05D005135 ORTHO05D005810 1.9e-115 419.5 253 91.7
FAN06G4903 Fragaria x ananassa HOM05D005135 ORTHO05D005810 4.1e-115 418.3 253 91.3
FvH4_7g28720 Fragaria vesca HOM05D005135 ORTHO05D005810 3.3e-112 408.7 247 91.5
RcHm_v2.0_Chr1g0376221 Rosa chinensis HOM05D005135 ORTHO05D005810 7.3e-112 407.5 253 88.5
FAN03G1115 Fragaria x ananassa HOM05D005135 ORTHO05D005810 2.6e-101 372.5 305 72.8
Dinv35139 Davidia involucrata HOM05D005135 ORTHO05D005810 1.3e-89 333.6 257 72.8
GSVIVG01018448001 Vitis vinifera HOM05D005135 ORTHO05D005810 2.8e-87 325.9 254 71.7
CiPaw.03G100200 Carya illinoinensis HOM05D005135 ORTHO05D005810 6.2e-87 324.7 245 71.8
Hma1.2p1_0488F.1_g163940 Hydrangea macrophylla HOM05D005135 ORTHO05D005810 3.1e-86 322.4 261 68.6
Thecc.03G166900 Theobroma cacao HOM05D005135 ORTHO05D005810 1.5e-85 320.1 255 70.2
Prupe.2G287200 Prunus persica HOM05D005135 ORTHO05D005810 1.1e-83 313.9 252 71.4
Duzib084G0614 Durio zibethinus HOM05D005135 ORTHO05D005810 4.2e-83 312.0 255 67.5
MD00G1004200 Malus domestica HOM05D005135 ORTHO05D005810 2.7e-82 309.3 247 71.7
MD01G1193100 Malus domestica HOM05D005135 ORTHO05D005810 1.0e-81 307.4 245 71.4
CSS0048110 Camellia sinensis var. sinensis HOM05D005135 ORTHO05D005810 1.8e-81 306.6 253 68.8
Potri.015G135000 Populus trichocarpa HOM05D005135 ORTHO05D005810 2.3e-81 306.2 262 69.5
Actinidia31800 Actinidia chinensis HOM05D005135 ORTHO05D005810 5.1e-81 305.1 255 68.2
ClCG05G007690 Citrullus lanatus HOM05D005135 ORTHO05D005810 5.1e-81 305.1 253 68.8
Duzib068G0893 Durio zibethinus HOM05D005135 ORTHO05D005810 5.1e-81 305.1 255 67.8
COL.COLO4_14228 Corchorus olitorius HOM05D005135 ORTHO05D005810 8.7e-81 304.3 255 66.3
Gohir.D08G104900 Gossypium hirsutum HOM05D005135 ORTHO05D005810 1.9e-80 303.1 255 67.1
MELO3C006858.2 Cucumis melo HOM05D005135 ORTHO05D005810 2.5e-80 302.8 253 68.4
Oeu030142.1 Olea europaea HOM05D005135 ORTHO05D005810 5.6e-80 301.6 254 67.7
Sed0024541 Sechium edule HOM05D005135 ORTHO05D005810 9.6e-80 300.8 250 67.2
Manes.14G031000 Manihot esculenta HOM05D005135 ORTHO05D005810 1.3e-79 300.4 250 68.4
Eucgr.K00188 Eucalyptus grandis HOM05D005135 ORTHO05D005810 2.1e-79 299.7 257 68.1
vmacro09870 Vaccinium macrocarpon HOM05D005135 ORTHO05D005810 2.1e-79 299.7 255 65.9
MSTRG.8780 Avicennia marina HOM05D005135 ORTHO05D005810 4.8e-79 298.5 243 67.5
Gohir.D12G262900 Gossypium hirsutum HOM05D005135 ORTHO05D005810 1.1e-78 297.4 255 64.7
CsaV3_3G016630 Cucumis sativus L. HOM05D005135 ORTHO05D005810 1.4e-78 297.0 253 67.6
Gohir.A12G262200 Gossypium hirsutum HOM05D005135 ORTHO05D005810 1.8e-78 296.6 255 64.7
Gorai.008G281800 Gossypium raimondii HOM05D005135 ORTHO05D005810 1.8e-78 296.6 255 64.7
Oeu022533.1 Olea europaea HOM05D005135 ORTHO05D005810 2.4e-78 296.2 261 64.0
Nn1g01287 Nelumbo nucifera HOM05D005135 ORTHO05D005810 9.0e-78 294.3 259 65.6
unitig_52.g17751 Utricularia gibba HOM05D005135 ORTHO05D005810 5.8e-77 291.6 246 67.9
Glyma.10G240700 Glycine max HOM05D005135 ORTHO05D005810 1.0e-76 290.8 255 65.9
arahy.Tifrunner.gnm1.ann1.UR3NDK Arachis hypogaea HOM05D005135 ORTHO05D005810 1.7e-76 290.0 252 66.7
Sed0023089 Sechium edule HOM05D005135 ORTHO05D005810 1.7e-76 290.0 255 64.3
Gohir.A08G093700 Gossypium hirsutum HOM05D005135 ORTHO05D005810 2.2e-76 289.7 255 64.7
Migut.F01160 Erythranthe guttata HOM05D005135 ORTHO05D005810 3.8e-76 288.9 252 67.1
Peaxi162Scf00557g00212 Petunia axillaris HOM05D005135 ORTHO05D005810 3.8e-76 288.9 256 64.1
arahy.Tifrunner.gnm1.ann1.3G6IEL Arachis hypogaea HOM05D005135 ORTHO05D005810 1.4e-75 287.0 252 66.3
Lalb_Chr06g0160891 Lupinus albus HOM05D005135 ORTHO05D005810 1.9e-75 286.6 253 65.2
VMungo0720G1039 Vigna mungo HOM05D005135 ORTHO05D005810 3.2e-75 285.8 255 63.9
CAN.G1187.4 Capsicum annuum HOM05D005135 ORTHO05D005810 5.5e-75 285.0 264 63.3
Sc13g0008230 Simmondsia chinensis HOM05D005135 ORTHO05D005810 5.5e-75 285.0 251 64.1
TAR629G2517 Trochodendron aralioides HOM05D005135 ORTHO05D005810 7.1e-75 284.6 256 65.6
Sabra15G0147000 Salix brachista HOM05D005135 ORTHO05D005810 2.7e-74 282.7 289 60.2
Lj5g0000742 Lotus japonicus HOM05D005135 ORTHO05D005810 4.6e-74 282.0 251 64.5
PSO782G0956 Papaver somniferum HOM05D005135 ORTHO05D005810 4.6e-74 282.0 252 67.9
PGSC0003DMG400027379 Solanum tuberosum HOM05D005135 ORTHO05D005810 4.6e-74 282.0 261 63.6
Ciclev10005677m.g Citrus clementina HOM05D005135 ORTHO05D005810 1.0e-73 280.8 257 65.0
Sopen11g029970 Solanum pennellii HOM05D005135 ORTHO05D005810 1.0e-73 280.8 257 63.4
Phvul.007G065300 Phaseolus vulgaris HOM05D005135 ORTHO05D005810 3.9e-73 278.9 255 63.9
Solyc03g006850.3 Solanum lycopersicum HOM05D005135 ORTHO05D005810 5.1e-73 278.5 258 63.2
BraA03t10892Z Brassica rapa HOM05D005135 ORTHO05D005810 8.7e-73 277.7 255 63.9
A03p16010 Brassica napus HOM05D005135 ORTHO05D005810 1.5e-72 276.9 255 63.5
Sopen03g002840 Solanum pennellii HOM05D005135 ORTHO05D005810 1.5e-72 276.9 258 62.8
EL10Ac3g05742 Beta vulgaris HOM05D005135 ORTHO05D005810 1.9e-72 276.6 249 62.7
BolC3t14274H Brassica oleracea HOM05D005135 ORTHO05D005810 2.5e-72 276.2 256 64.5
AUR62021268 Chenopodium quinoa HOM05D005135 ORTHO05D005810 2.5e-72 276.2 256 61.7
Ca_10813_v3 Cicer arietinum L. HOM05D005135 ORTHO05D005810 2.5e-72 276.2 251 62.9
Solyc11g072300.2 Solanum lycopersicum HOM05D005135 ORTHO05D005810 3.3e-72 275.8 257 62.3
Glyma.20G154000 Glycine max HOM05D005135 ORTHO05D005810 5.7e-72 275.0 254 62.6
Nitab4.5_0000205g0180 Nicotiana tabacum HOM05D005135 ORTHO05D005810 5.7e-72 275.0 253 63.6
BcaC01g06140 Brassica carinata HOM05D005135 ORTHO05D005810 9.6e-72 274.2 255 63.9
TWI23G0093 Tripterygium wilfordii HOM05D005135 ORTHO05D005810 9.6e-72 274.2 248 64.1
Hund04685 Selenicereus undatus HOM05D005135 ORTHO05D005810 1.6e-71 273.5 250 63.2
C03p18840 Brassica napus HOM05D005135 ORTHO05D005810 2.1e-71 273.1 255 63.9
Oeu030256.1 Olea europaea HOM05D005135 ORTHO05D005810 3.7e-71 272.3 253 61.7
Ah.07g208790 Amaranthus hybridus HOM05D005135 ORTHO05D005810 2.4e-70 269.6 250 62.4
CDE07G1455 Ceratophyllum demersum HOM05D005135 ORTHO05D005810 5.3e-70 268.5 257 62.3
Lj1A988G25 Lonicera japonica HOM05D005135 ORTHO05D005810 6.9e-70 268.1 221 69.7
CAN.G1182.3 Capsicum annuum HOM05D005135 ORTHO05D005810 9.0e-70 267.7 248 62.5
ECA238G2105 Erigeron canadensis HOM05D005135 ORTHO05D005810 2.6e-69 266.2 245 62.0
SGA_v2.0_scaffold10G05426 Striga asiatica HOM05D005135 ORTHO05D005810 2.6e-69 266.2 245 64.9
ATR0661G043 Amborella trichopoda HOM05D005135 ORTHO05D005810 4.5e-69 265.4 254 62.2
Aa31LG3G8280 Aethionema arabicum HOM05D005135 ORTHO05D005810 5.8e-69 265.0 247 63.2
Aqoxy7G00498 Aquilegia oxysepala HOM05D005135 ORTHO05D005810 2.2e-68 263.1 260 62.7
HanXRQChr14g0461821 Helianthus annuus HOM05D005135 ORTHO05D005810 3.8e-68 262.3 240 63.8
PSO478G0331 Papaver somniferum HOM05D005135 ORTHO05D005810 1.4e-67 260.4 252 63.5
Rhsim03G0174700 Rhododendron simsii HOM05D000559 ORTHO05D000596 1.4e-67 260.4 252 61.1
Psat7g169320 Pisum sativum HOM05D005135 ORTHO05D005810 5.5e-67 258.5 247 62.3
Rhsim09G0195100 Rhododendron simsii HOM05D000559 ORTHO05D005810 9.3e-67 257.7 240 63.3
SGA_v2.0_scaffold303G47872 Striga asiatica HOM05D005135 ORTHO05D005810 2.1e-66 256.5 299 55.5
Cc02_g03590 Coffea canephora HOM05D005135 ORTHO05D005810 2.7e-66 256.1 267 59.2
PGR142G1544 Punica granatum HOM05D005135 ORTHO05D005810 2.7e-66 256.1 253 60.1
Medtr1g101945 Medicago truncatula HOM05D005135 ORTHO05D005810 4.6e-66 255.4 251 59.4
TWI39G0390 Tripterygium wilfordii HOM05D005135 ORTHO05D005810 4.6e-66 255.4 246 60.6
VMungo0464G2082 Vigna mungo HOM05D000559 ORTHO05D005810 3.9e-65 252.3 258 58.9
Sp6g14090 Schrenkiella parvula HOM05D005135 ORTHO05D005810 8.7e-65 251.1 252 60.3
BcaB01g04154 Brassica carinata HOM05D005135 ORTHO05D005810 1.5e-64 250.4 250 60.8
BcaB08g35536 Brassica carinata HOM05D005135 ORTHO05D005810 1.9e-64 250.0 250 60.8
Nitab4.5_0001573g0020 Nicotiana tabacum HOM05D005135 ORTHO05D005810 3.3e-64 249.2 242 61.6
AT5G51840 Arabidopsis thaliana HOM05D005135 ORTHO05D005810 7.4e-64 248.1 249 59.8
Carub.0008s1186 Capsella rubella HOM05D005135 ORTHO05D005810 3.7e-63 245.7 249 58.2
Thhalv10014510m.g Eutrema salsugineum HOM05D005135 ORTHO05D005810 2.4e-62 243.0 258 58.9
CARHR264720 Cardamine hirsuta HOM05D005135 ORTHO05D005810 3.4e-61 239.2 254 59.1
HPP92_001726 Vanilla planifolia HOM05D005135 ORTHO05D005810 7.7e-61 238.0 253 56.5
Dinv28508 Davidia involucrata HOM05D005135 ORTHO05D005810 1.3e-60 237.3 156 78.8
TPR.G17397 Trifolium pratense HOM05D005135 ORTHO05D005810 1.3e-60 237.3 224 62.5
Zm00001eb027200 Zea mays HOM05D005135 ORTHO05D005810 1.7e-60 236.9 245 58.8
vmacro06737 Vaccinium macrocarpon HOM05D005135 ORTHO05D005810 2.2e-60 236.5 375 44.3
AL8G26130 Arabidopsis lyrata HOM05D005135 ORTHO05D005810 2.9e-60 236.1 254 57.9
HPP92_001719 Vanilla planifolia HOM05D005135 ORTHO05D005810 2.9e-60 236.1 253 56.1
PGR042G3048 Punica granatum HOM05D005135 ORTHO05D005810 2.1e-58 229.9 151 80.8
Gohir.D04G141600 Gossypium hirsutum HOM05D005135 ORTHO05D005810 4.6e-58 228.8 152 78.9
Lsat_1_v5_gn_2_130120 Lactuca sativa HOM05D005135 ORTHO05D005810 1.0e-57 227.6 265 54.0
AUR62016060 Chenopodium quinoa HOM05D005135 ORTHO05D005810 1.5e-56 223.8 267 52.4
DCAR_020208 Daucus carota HOM05D005135 ORTHO05D005810 1.7e-55 220.3 220 63.2
Actinidia14214 Actinidia chinensis HOM05D005135 ORTHO05D005810 3.7e-55 219.2 182 66.5
Glyma.16G200500 Glycine max HOM05D005135 ORTHO05D005810 5.0e-52 208.8 248 51.2
AagrBONN_evm.TU.Sc2ySwM_117.1266 Anthoceros agrestis HOM05D005135 ORTHO05D005810 2.7e-50 203.0 278 48.2
Lalb_Chr21g0304891 Lupinus albus HOM05D005135 ORTHO05D005810 7.7e-45 184.9 220 53.2
Actinidia03096 Actinidia chinensis HOM05D005135 ORTHO05D005810 2.9e-44 183.0 192 58.9
Mapoly0096s0072 Marchantia polymorpha HOM05D005135 ORTHO05D005810 1.1e-43 181.0 252 45.2
Haze_13791 Corylus avellana HOM05D005135 ORTHO05D005810 3.0e-41 172.9 268 47.0
Potri.012G132832 Populus trichocarpa HOM05D005135 ORTHO05D005810 2.2e-39 166.8 181 58.0
PGSC0003DMG400024247 Solanum tuberosum HOM05D005135 ORTHO05D005810 6.3e-39 165.2 176 58.0
CDE04G3520 Ceratophyllum demersum HOM05D005135 ORTHO05D005810 1.8e-38 163.7 176 60.8
Phvul.004G123300 Phaseolus vulgaris HOM05D005135 ORTHO05D005810 7.7e-37 158.3 249 44.6
Pp3c13_17710 Physcomitrium patens HOM05D005135 ORTHO05D005810 1.1e-35 154.5 279 41.2
Lj8C32T8 Lonicera japonica HOM05D005135 ORTHO05D005810 4.2e-35 152.5 101 77.2
Peaxi162Scf00192g00520 Petunia axillaris HOM05D005135 ORTHO05D005810 4.7e-34 149.1 207 50.7
AL8G30000 Arabidopsis lyrata HOM05D005135 ORTHO05D005810 6.8e-33 145.2 97 76.3
SHI13830 Sapria himalayana HOM05D005135 ORTHO05D005810 2.6e-32 143.3 130 60.8
Lj8A32T30 Lonicera japonica HOM05D005135 ORTHO05D005810 1.4e-30 137.5 179 52.0
BcaC04g20628 Brassica carinata HOM05D005135 ORTHO05D005810 4.1e-22 109.4 223 42.6
SHI48584 Sapria himalayana HOM05D005135 ORTHO05D005810 1.6e-21 107.5 151 48.3
Cre16.g661800 Chlamydomonas reinhardtii HOM05D005135 ORTHO05D005810 5.9e-21 105.5 123 47.2
Hund01499 Selenicereus undatus HOM05D000873 ORTHO05D005810 2.8e-18 96.7 106 54.7
Os10g0188400 Oryza sativa ssp. japonica HOM05D005135 ORTHO05D005810 2.3e-17 93.6 82 63.4
Hma1.2p1_3202F.1_g333920 Hydrangea macrophylla HOM05D005135 ORTHO05D005810 2.9e-15 86.7 55 81.8
Duzib205G1338 Durio zibethinus HOM05D005135 ORTHO05D005810 3.2e-14 83.2 133 45.1
Potri.012G132766 Populus trichocarpa HOM05D005135 ORTHO05D005810 3.2e-14 83.2 64 68.8
TAR291G0007 Trochodendron aralioides HOM05D005135 ORTHO05D005810 1.2e-13 81.3 154 42.9
Duzib205G1376 Durio zibethinus HOM05D005135 ORTHO05D005810 2.7e-13 80.1 100 50.0
Cpa.g.sc4.198 Carica papaya HOM05D005135 ORTHO05D005810 1.7e-12 77.4 98 52.0
SMO201G0013 Selaginella moellendorffii HOM05D005135 ORTHO05D005810 9.5e-11 71.6 63 57.1
SEGI_16349 Sequoiadendron giganteum HOM05D056048 ORTHO05D005810 1.6e-10 70.9 171 34.5
CDE04G1613 Ceratophyllum demersum HOM05D005135 ORTHO05D005810 2.2e-07 60.5 37 73.0
PRCOL_00003096 Prasinoderma coloniale HOM05D005135 ORTHO05D005810 2.9e-07 60.1 119 38.7
C09p41330 Brassica napus HOM05D005135 ORTHO05D005810 1.9e-06 57.4 179 34.1
BolC9t57008H Brassica oleracea HOM05D005135 ORTHO05D005810 1.9e-06 57.4 179 34.1


User provided reference genes

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