Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN01G0846 Fragaria x ananassa HOM05D005934 ORTHO05D005165 7.5e-240 833.6 455 100.0
FvH4_7g19882 Fragaria vesca HOM05D005934 ORTHO05D005165 4.3e-219 764.6 464 92.5
FAN03G0840 Fragaria x ananassa HOM05D005934 ORTHO05D005165 7.3e-219 763.8 464 92.2
FAN01G1479 Fragaria x ananassa HOM05D005934 ORTHO05D005165 8.0e-218 760.4 455 93.2
FAN10G0472 Fragaria x ananassa HOM05D005934 ORTHO05D005165 4.1e-214 748.0 464 91.4
RcHm_v2.0_Chr1g0363881 Rosa chinensis HOM05D005934 ORTHO05D005165 2.9e-191 672.2 464 81.9
MD01G1111100 Malus domestica HOM05D005934 ORTHO05D005165 1.1e-171 607.1 467 76.0
Prupe.2G216000 Prunus persica HOM05D005934 ORTHO05D005165 1.3e-159 567.0 467 72.6
MD07G1177300 Malus domestica HOM05D005934 ORTHO05D005165 5.1e-156 555.1 467 70.7
Atru.chr12.720 Acer truncatum HOM05D005934 ORTHO05D005165 2.9e-151 539.3 458 69.0
TWI38G0616 Tripterygium wilfordii HOM05D005934 ORTHO05D005165 1.5e-144 516.9 463 67.6
QL08p056591 Quercus lobata HOM05D005934 ORTHO05D005165 2.0e-144 516.5 485 64.1
Duzib114G0889 Durio zibethinus HOM05D005934 ORTHO05D005165 3.4e-144 515.8 467 67.2
CANSAT56G0550 Cannabis sativa HOM05D005934 ORTHO05D005165 1.9e-142 510.0 452 68.4
Haze_16922 Corylus avellana HOM05D005934 ORTHO05D005165 5.7e-139 498.4 474 64.1
Gorai.009G314800 Gossypium raimondii HOM05D005934 ORTHO05D005165 2.2e-138 496.5 463 65.2
Gohir.D05G297500 Gossypium hirsutum HOM05D005934 ORTHO05D005165 3.7e-138 495.7 463 65.2
PGR142G2623 Punica granatum HOM05D005934 ORTHO05D005165 1.4e-137 493.8 469 64.2
Gohir.A05G297600 Gossypium hirsutum HOM05D005934 ORTHO05D005165 8.5e-135 484.6 465 64.7
Phvul.007G092600 Phaseolus vulgaris HOM05D005934 ORTHO05D005165 8.0e-133 478.0 465 63.0
Gohir.A05G345500 Gossypium hirsutum HOM05D005934 ORTHO05D005165 1.2e-131 474.2 459 63.2
Lj5g0021458 Lotus japonicus HOM05D005934 ORTHO05D005165 1.3e-130 470.7 462 62.1
Ciclev10031457m.g Citrus clementina HOM05D005934 ORTHO05D005165 2.2e-130 469.9 466 61.4
arahy.Tifrunner.gnm1.ann1.H195MC Arachis hypogaea HOM05D005934 ORTHO05D005165 2.4e-129 466.5 458 60.3
TWI63G0603 Tripterygium wilfordii HOM05D005934 ORTHO05D005165 4.1e-129 465.7 462 62.1
Eucgr.G02812 Eucalyptus grandis HOM05D005934 ORTHO05D005165 1.6e-128 463.8 462 61.9
Thecc.10G070000 Theobroma cacao HOM05D005934 ORTHO05D005165 2.7e-128 463.0 463 62.9
Cpa.g.sc53.46 Carica papaya HOM05D005934 ORTHO05D005165 1.7e-127 460.3 462 61.5
Manes.10G044200 Manihot esculenta HOM05D005934 ORTHO05D005165 2.9e-127 459.5 449 62.8
Gohir.D04G084700 Gossypium hirsutum HOM05D005934 ORTHO05D005165 8.5e-127 458.0 459 61.7
TPR.G1756 Trifolium pratense HOM05D005934 ORTHO05D005165 1.5e-126 457.2 465 61.5
Ca_10584_v3 Cicer arietinum L. HOM05D005934 ORTHO05D005165 4.0e-124 449.1 459 59.9
arahy.Tifrunner.gnm1.ann1.W2M3W6 Arachis hypogaea HOM05D005934 ORTHO05D005165 5.2e-124 448.7 459 58.8
Medtr1g095640 Medicago truncatula HOM05D005934 ORTHO05D005165 2.6e-123 446.4 465 60.0
Sp6g12980 Schrenkiella parvula HOM05D005934 ORTHO05D005165 7.5e-123 444.9 458 60.7
Glyma.20G178100 Glycine max HOM05D005934 ORTHO05D005165 1.7e-122 443.7 465 59.4
CSS0026746 Camellia sinensis var. sinensis HOM05D005934 ORTHO05D005165 6.3e-122 441.8 441 60.8
PSO339G5008 Papaver somniferum HOM05D005934 ORTHO05D005165 2.4e-121 439.9 462 61.7
BraA03t10943Z Brassica rapa HOM05D005934 ORTHO05D005165 2.0e-120 436.8 455 59.8
VMungo0720G0064 Vigna mungo HOM05D005934 ORTHO05D005165 2.7e-120 436.4 429 62.2
COL.COLO4_23717 Corchorus olitorius HOM05D005934 ORTHO05D005165 3.5e-120 436.0 457 60.8
Sed0003296 Sechium edule HOM05D005934 ORTHO05D005165 4.5e-120 435.6 464 58.8
Carub.0008s1083 Capsella rubella HOM05D005934 ORTHO05D005165 1.7e-119 433.7 451 60.1
Nitab4.5_0008994g0010 Nicotiana tabacum HOM05D005934 ORTHO05D005165 1.7e-119 433.7 455 59.8
A03p16560 Brassica napus HOM05D005934 ORTHO05D005165 2.9e-119 433.0 453 59.6
Thhalv10013687m.g Eutrema salsugineum HOM05D005934 ORTHO05D005165 2.9e-119 433.0 447 60.0
Nitab4.5_0000233g0170 Nicotiana tabacum HOM05D005934 ORTHO05D005165 3.3e-118 429.5 455 60.0
C03p19490 Brassica napus HOM05D005934 ORTHO05D005165 7.2e-118 428.3 456 59.9
BolC3t14330H Brassica oleracea HOM05D005934 ORTHO05D005165 7.2e-118 428.3 456 60.3
TAR636G3344 Trochodendron aralioides HOM05D005934 ORTHO05D005165 3.6e-117 426.0 476 55.5
AT5G50840 Arabidopsis thaliana HOM05D005934 ORTHO05D005165 8.0e-117 424.9 453 57.6
PSO541G4936 Papaver somniferum HOM05D005934 ORTHO05D005165 1.0e-116 424.5 465 60.2
CARHR257410 Cardamine hirsuta HOM05D005934 ORTHO05D005165 8.9e-116 421.4 454 59.5
EL10Ac2g03586 Beta vulgaris HOM05D005934 ORTHO05D005165 2.0e-115 420.2 498 53.0
CSS0015713 Camellia sinensis var. sinensis HOM05D005934 ORTHO05D005165 2.0e-115 420.2 456 58.8
AL8G25010 Arabidopsis lyrata HOM05D005934 ORTHO05D005165 1.7e-114 417.2 451 58.3
Sc09g0006590 Simmondsia chinensis HOM05D005934 ORTHO05D005165 8.3e-114 414.8 453 58.1
Lalb_Chr02g0141961 Lupinus albus HOM05D005934 ORTHO05D005165 1.1e-113 414.5 466 56.7
Dinv31355 Davidia involucrata HOM05D005934 ORTHO05D005165 2.7e-112 409.8 468 55.3
Solyc04g047750.3 Solanum lycopersicum HOM05D005934 ORTHO05D005165 2.3e-111 406.8 458 55.9
ClCG09G020550 Citrullus lanatus HOM05D005934 ORTHO05D005165 2.9e-111 406.4 456 57.0
Sopen04g017890 Solanum pennellii HOM05D005934 ORTHO05D005165 2.9e-111 406.4 458 55.9
GSVIVG01016314001 Vitis vinifera HOM05D005934 ORTHO05D005165 1.5e-110 404.1 448 58.3
vmacro07085 Vaccinium macrocarpon HOM05D005934 ORTHO05D005165 7.3e-110 401.7 652 45.6
BolC2t08210H Brassica oleracea HOM05D005934 ORTHO05D005165 2.1e-109 400.2 446 57.0
CSS0046829 Camellia sinensis var. sinensis HOM05D005934 ORTHO05D005165 4.7e-109 399.1 441 56.7
BcaC03g14634 Brassica carinata HOM05D005934 ORTHO05D005165 8.0e-109 398.3 446 56.3
C02p20680 Brassica napus HOM05D005934 ORTHO05D005165 8.0e-109 398.3 445 56.9
BcaB05g24030 Brassica carinata HOM05D005934 ORTHO05D005165 1.4e-108 397.5 449 56.1
CAN.G471.3 Capsicum annuum HOM05D005934 ORTHO05D005165 4.0e-108 396.0 450 55.8
CiPaw.02G175500 Carya illinoinensis HOM05D005934 ORTHO05D005165 5.2e-108 395.6 341 68.9
Aqoxy2G01769 Aquilegia oxysepala HOM05D005934 ORTHO05D005165 9.8e-107 391.3 450 54.4
Potri.010G219700 Populus trichocarpa HOM05D005934 ORTHO05D005165 2.2e-106 390.2 466 54.3
BraA02t06319Z Brassica rapa HOM05D005934 ORTHO05D005165 2.4e-105 386.7 452 54.0
Sabra10G0169500 Salix brachista HOM05D005934 ORTHO05D005165 1.0e-103 381.3 467 53.3
Cc02_g11420 Coffea canephora HOM05D005934 ORTHO05D005165 3.9e-103 379.4 273 77.3
Psat6g182920 Pisum sativum HOM05D005934 ORTHO05D005165 6.6e-103 378.6 461 52.7
AUR62027949 Chenopodium quinoa HOM05D005934 ORTHO05D005165 1.9e-102 377.1 515 48.5
A02p12610 Brassica napus HOM05D005934 ORTHO05D005165 7.3e-102 375.2 444 54.3
MSTRG.27465 Avicennia marina HOM05D005934 ORTHO05D005165 2.8e-101 373.2 449 54.8
TAR633G0441 Trochodendron aralioides HOM05D005934 ORTHO05D005165 6.8e-100 368.6 474 51.9
Gorai.012G094400 Gossypium raimondii HOM05D005934 ORTHO05D005165 4.4e-99 365.9 384 59.9
Ah.11g043450 Amaranthus hybridus HOM05D005934 ORTHO05D005165 2.2e-98 363.6 465 51.4
THA.LOC104819151 Tarenaya hassleriana HOM05D005934 ORTHO05D005165 3.7e-98 362.8 440 55.0
Migut.F01993 Erythranthe guttata HOM05D005934 ORTHO05D005165 1.9e-97 360.5 450 53.6
Oeu043928.1 Olea europaea HOM05D005934 ORTHO05D005165 3.5e-96 356.3 450 52.7
ATR0759G024 Amborella trichopoda HOM05D005934 ORTHO05D005165 6.0e-96 355.5 524 46.8
unitig_899.g14449 Utricularia gibba HOM05D005934 ORTHO05D005165 2.5e-94 350.1 451 52.5
AUR62020763 Chenopodium quinoa HOM05D005934 ORTHO05D005165 1.8e-92 344.0 459 49.0
Os03g0288600 Oryza sativa ssp. japonica HOM05D005934 ORTHO05D005165 6.8e-92 342.0 441 49.9
SGA_v2.0_scaffold13G06359 Striga asiatica HOM05D005934 ORTHO05D005165 4.4e-91 339.3 448 51.8
Dinv11795 Davidia involucrata HOM05D005934 ORTHO05D005165 1.6e-88 330.9 466 48.9
CsaV3_5G025820 Cucumis sativus L. HOM05D005934 ORTHO05D005165 2.8e-85 320.1 459 48.1
Hund19343 Selenicereus undatus HOM05D005934 ORTHO05D005165 2.4e-81 307.0 449 47.4
Zm00001eb397090 Zea mays HOM05D005934 ORTHO05D005165 7.1e-81 305.4 447 45.4
Aa31LG3G7310 Aethionema arabicum HOM05D005934 ORTHO05D005165 2.1e-80 303.9 447 49.7
HanXRQChr11g0323311 Helianthus annuus HOM05D005934 ORTHO05D005165 1.7e-79 300.8 462 45.7
HanXRQChr14g0457271 Helianthus annuus HOM05D005934 ORTHO05D005165 1.7e-79 300.8 463 46.2
ECA238G0735 Erigeron canadensis HOM05D005934 ORTHO05D005165 2.1e-77 293.9 453 45.3
Lj1C919T16 Lonicera japonica HOM05D005934 ORTHO05D005165 8.1e-77 292.0 256 68.8
MELO3C002886.2 Cucumis melo HOM05D005934 ORTHO05D005165 3.8e-74 283.1 284 60.9
Aa31LG3G7290 Aethionema arabicum HOM05D005934 ORTHO05D005165 1.4e-73 281.2 358 49.7
Lsat_1_v5_gn_2_113761 Lactuca sativa HOM05D005934 ORTHO05D005165 2.1e-69 267.3 452 43.8
Zm00001eb013240 Zea mays HOM05D005934 ORTHO05D005165 1.4e-68 264.6 280 55.4
DCAR_003640 Daucus carota HOM05D005934 ORTHO05D005165 9.9e-67 258.5 232 65.5
SMO201G0134 Selaginella moellendorffii HOM05D005934 ORTHO05D005165 4.3e-62 243.0 262 53.8
Hund22502 Selenicereus undatus HOM05D005934 ORTHO05D005165 4.3e-54 216.5 283 51.2
MBI05_g20541_MAGBIO Magnolia biondii HOM05D005934 ORTHO05D005165 2.8e-53 213.8 488 37.5
CBR_g15990 Chara braunii HOM05D005934 ORTHO05D005165 7.6e-51 205.7 321 43.6
Actinidia38257 Actinidia chinensis HOM05D005934 ORTHO05D005165 1.8e-47 194.5 482 36.3
Mapoly0007s0101 Marchantia polymorpha HOM05D005934 ORTHO05D005165 1.4e-44 184.9 432 35.6
Pp3c11_23150 Physcomitrium patens HOM05D005934 ORTHO05D005165 1.7e-37 161.4 361 36.8
THA.LOC104819150 Tarenaya hassleriana HOM05D005934 ORTHO05D005165 9.4e-33 145.6 169 56.8
HPP92_006750 Vanilla planifolia HOM05D005934 ORTHO05D005165 3.0e-31 140.6 270 38.9
Nn2g10703 Nelumbo nucifera HOM05D005934 ORTHO05D005165 6.3e-29 132.9 87 83.9
BraA03t13391Z Brassica rapa HOM05D005934 ORTHO05D005165 3.5e-27 127.1 183 49.2
A03p42390 Brassica napus HOM05D005934 ORTHO05D005165 7.7e-27 125.9 183 48.6
SalBow4G0998 Salvia bowleyana HOM05D011515 ORTHO05D005165 3.2e-25 120.6 95 70.5
SalBow4G2489 Salvia bowleyana HOM05D011515 ORTHO05D005165 3.2e-25 120.6 95 70.5
Lsat_1_v5_gn_1_128800 Lactuca sativa HOM05D005934 ORTHO05D005165 8.2e-21 105.9 194 42.3
Peaxi162Scf00108g01212 Petunia axillaris HOM05D005934 ORTHO05D005165 1.0e-18 99.0 164 43.9
Peaxi162Scf00108g01217 Petunia axillaris HOM05D005934 ORTHO05D005165 1.9e-17 94.7 327 30.3
Actinidia03038 Actinidia chinensis HOM05D005934 ORTHO05D005165 2.5e-17 94.4 153 45.1
Nn2g10701 Nelumbo nucifera HOM05D005934 ORTHO05D005165 1.6e-16 91.7 193 37.8
Atru.chr12.721 Acer truncatum HOM05D002519 ORTHO05D005165 6.8e-15 86.3 88 58.0
Hund22503 Selenicereus undatus HOM05D005934 ORTHO05D005165 2.0e-14 84.7 153 35.3
MCO09G455 Micromonas commoda HOM05D005934 ORTHO05D005165 5.7e-14 83.2 271 30.3
Cre12.g546300 Chlamydomonas reinhardtii HOM05D005934 ORTHO05D005165 2.4e-12 77.8 237 31.2
Medtr1g101870 Medicago truncatula HOM05D000280 ORTHO05D000632 7.0e-12 76.3 51 74.5
Actinidia03037 Actinidia chinensis HOM05D005934 ORTHO05D005165 4.4e-06 57.0 46 63.0


User provided reference genes

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