Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN01G0766 Fragaria x ananassa HOM05D007292 ORTHO05D009084 3.3e-139 498.4 263 100.0
FvH4_7g24710 Fragaria vesca HOM05D007292 ORTHO05D009084 7.9e-125 450.7 260 93.8
FAN06G1000 Fragaria x ananassa HOM05D007292 ORTHO05D009084 7.9e-125 450.7 260 93.8
FAN10G1098 Fragaria x ananassa HOM05D007292 ORTHO05D009084 7.9e-125 450.7 260 93.5
FAN03G0495 Fragaria x ananassa HOM05D004762 ORTHO05D005972 3.0e-116 422.2 246 93.5
RcHm_v2.0_Chr1g0370551 Rosa chinensis HOM05D007292 ORTHO05D009084 1.1e-105 387.1 261 83.5
Prupe.2G252500 Prunus persica HOM05D007292 ORTHO05D009084 2.0e-91 339.7 260 73.1
MD01G1154900 Malus domestica HOM05D007292 ORTHO05D009084 2.6e-75 286.2 249 67.9
GSVIVG01032790001 Vitis vinifera HOM05D007292 ORTHO05D009084 3.8e-63 245.7 257 59.1
MD07G1224000 Malus domestica HOM05D007292 ORTHO05D009084 1.8e-60 236.9 254 58.3
CiPaw.01G300300 Carya illinoinensis HOM05D007292 ORTHO05D009084 8.9e-60 234.6 257 56.0
TAR633G2478 Trochodendron aralioides HOM05D007292 ORTHO05D009084 9.8e-59 231.1 261 56.7
Thecc.10G013900 Theobroma cacao HOM05D007292 ORTHO05D009084 1.8e-57 226.9 258 55.0
Dinv10605 Davidia involucrata HOM05D007292 ORTHO05D009084 4.1e-57 225.7 251 57.0
Haze_17244 Corylus avellana HOM05D004762 ORTHO05D005972 1.0e-55 221.1 235 56.2
Cfa001300 Carpinus fangiana HOM05D007292 ORTHO05D009084 3.9e-55 219.2 233 56.7
Ciclev10032544m.g Citrus clementina HOM05D007292 ORTHO05D009084 3.9e-55 219.2 259 55.6
QL08p063404 Quercus lobata HOM05D007292 ORTHO05D009084 8.6e-55 218.0 258 53.9
TWI09G0172 Tripterygium wilfordii HOM05D007292 ORTHO05D009084 3.3e-54 216.1 258 52.3
Manes.07G131600 Manihot esculenta HOM05D007292 ORTHO05D009084 8.0e-53 211.5 256 54.3
Cpa.g.sc19.157 Carica papaya HOM05D007292 ORTHO05D009084 3.1e-52 209.5 258 53.1
Atru.chr12.94 Acer truncatum HOM05D007292 ORTHO05D009084 6.8e-52 208.4 258 56.6
TWI53G0916 Tripterygium wilfordii HOM05D007292 ORTHO05D009084 9.8e-51 204.5 250 51.6
Duzib114G0074 Durio zibethinus HOM05D007292 ORTHO05D009084 2.9e-50 203.0 250 52.0
PGSC0003DMG400027726 Solanum tuberosum HOM05D007292 ORTHO05D009084 1.9e-49 200.3 257 52.9
Actinidia00958 Actinidia chinensis HOM05D007292 ORTHO05D009084 1.0e-47 194.5 265 50.9
vmacro10031 Vaccinium macrocarpon HOM05D007292 ORTHO05D009084 1.7e-47 193.7 253 51.0
Lalb_Chr08g0231651 Lupinus albus HOM05D007292 ORTHO05D009084 5.0e-47 192.2 251 50.6
Sopen03g026090 Solanum pennellii HOM05D007292 ORTHO05D009084 1.1e-46 191.0 257 51.8
MELO3C018364.2 Cucumis melo HOM05D007292 ORTHO05D009084 1.5e-46 190.7 264 52.3
arahy.Tifrunner.gnm1.ann1.RI3S0A Arachis hypogaea HOM05D007292 ORTHO05D009084 1.9e-46 190.3 258 51.2
CANSAT56G1912 Cannabis sativa HOM05D007292 ORTHO05D009084 3.3e-46 189.5 253 51.0
Potri.010G186800 Populus trichocarpa HOM05D007292 ORTHO05D009084 4.3e-46 189.1 250 50.4
CsaV3_5G010290 Cucumis sativus L. HOM05D007292 ORTHO05D009084 5.6e-46 188.7 261 52.9
CSS0010989 Camellia sinensis var. sinensis HOM05D007292 ORTHO05D009084 7.3e-46 188.3 254 51.2
arahy.Tifrunner.gnm1.ann1.W7USAB Arachis hypogaea HOM05D007292 ORTHO05D009084 1.2e-45 187.6 258 51.2
Gohir.A05G330800 Gossypium hirsutum HOM05D007292 ORTHO05D009084 6.2e-45 185.3 251 51.4
Potri.008G070700 Populus trichocarpa HOM05D007292 ORTHO05D009084 1.1e-44 184.5 250 49.6
Glyma.18G025900 Glycine max HOM05D007292 ORTHO05D009084 1.8e-44 183.7 258 48.4
Glyma.11G231200 Glycine max HOM05D007292 ORTHO05D009084 4.0e-44 182.6 259 48.3
Gorai.012G078000 Gossypium raimondii HOM05D007292 ORTHO05D009084 4.0e-44 182.6 252 51.6
Gohir.D04G069400 Gossypium hirsutum HOM05D007292 ORTHO05D009084 1.2e-43 181.0 251 51.0
Sed0024586 Sechium edule HOM05D007292 ORTHO05D009084 1.5e-43 180.6 261 48.7
Lj6g0005846 Lotus japonicus HOM05D007292 ORTHO05D009084 4.4e-43 179.1 253 47.8
Rhsim09G0178500 Rhododendron simsii HOM05D007292 ORTHO05D009084 5.8e-43 178.7 260 48.5
PGR044G1044 Punica granatum HOM05D007292 ORTHO05D009084 2.2e-42 176.8 252 50.4
ClCG07G004350 Citrullus lanatus HOM05D007292 ORTHO05D009084 6.4e-42 175.3 250 50.0
Phvul.001G244400 Phaseolus vulgaris HOM05D007292 ORTHO05D009084 1.1e-41 174.5 258 45.3
Medtr3g070960 Medicago truncatula HOM05D007292 ORTHO05D009084 1.4e-41 174.1 253 47.4
Nitab4.5_0002701g0020 Nicotiana tabacum HOM05D007292 ORTHO05D009084 1.4e-41 174.1 256 48.0
Solyc03g095990.1 Solanum lycopersicum HOM05D007292 ORTHO05D009084 2.4e-41 173.3 213 53.5
TAR636G1797 Trochodendron aralioides HOM05D007292 ORTHO05D009084 4.1e-41 172.6 258 48.8
PSO384G0417 Papaver somniferum HOM05D007292 ORTHO05D009084 5.4e-41 172.2 259 47.1
VMungo1383G3483 Vigna mungo HOM05D001399 ORTHO05D001670 9.2e-41 171.4 273 43.2
AUR62022909 Chenopodium quinoa HOM05D007292 ORTHO05D009084 2.7e-40 169.9 228 49.6
Nitab4.5_0000487g0050 Nicotiana tabacum HOM05D007292 ORTHO05D009084 2.7e-40 169.9 230 48.7
EL10Ac2g04856 Beta vulgaris HOM05D007292 ORTHO05D009084 6.0e-40 168.7 227 51.5
TPR.G11203 Trifolium pratense HOM05D007292 ORTHO05D009084 3.0e-39 166.4 255 46.3
Actinidia13950 Actinidia chinensis HOM05D007292 ORTHO05D009084 6.6e-39 165.2 249 48.6
Ah.16g103670 Amaranthus hybridus HOM05D007292 ORTHO05D009084 1.5e-38 164.1 250 47.2
Eucgr.J00191 Eucalyptus grandis HOM05D007292 ORTHO05D009084 2.5e-38 163.3 250 47.6
Peaxi162Scf00484g00003 Petunia axillaris HOM05D007292 ORTHO05D009084 2.5e-38 163.3 208 51.4
Psat5g129440 Pisum sativum HOM05D007292 ORTHO05D009084 3.6e-37 159.5 258 44.6
Hund13879 Selenicereus undatus HOM05D007292 ORTHO05D009084 1.1e-36 157.9 198 52.0
Ca_15135_v3 Cicer arietinum L. HOM05D007292 ORTHO05D009084 8.9e-36 154.8 253 41.9
Sabra08G0052000 Salix brachista HOM05D007292 ORTHO05D009084 1.2e-35 154.5 212 49.1
ATR0681G254 Amborella trichopoda HOM05D007292 ORTHO05D009084 5.8e-35 152.1 210 47.6
Lsat_1_v5_gn_2_124081 Lactuca sativa HOM05D007292 ORTHO05D009084 5.8e-35 152.1 254 47.2
Hma1.2p1_0145F.1_g065370 Hydrangea macrophylla HOM05D007292 ORTHO05D009084 2.2e-34 150.2 107 77.6
Hma1.2p1_2705F.1_g327175 Hydrangea macrophylla HOM05D007292 ORTHO05D009084 2.2e-34 150.2 107 77.6
Cc08_g07220 Coffea canephora HOM05D007292 ORTHO05D009084 2.9e-34 149.8 199 50.3
Aqoxy6G01833 Aquilegia oxysepala HOM05D007292 ORTHO05D009084 6.4e-34 148.7 257 45.1
SalBow5G4600 Salvia bowleyana HOM05D007292 ORTHO05D009084 1.9e-33 147.1 249 46.2
Aa31LG10G10950 Aethionema arabicum HOM05D007292 ORTHO05D009084 2.4e-33 146.7 141 61.0
Sp5g06520 Schrenkiella parvula HOM05D007292 ORTHO05D009084 3.2e-33 146.4 154 56.5
BraA04t16126Z Brassica rapa HOM05D007292 ORTHO05D009084 2.1e-32 143.7 156 53.8
Carub.0005s2275 Capsella rubella HOM05D007292 ORTHO05D009084 4.6e-32 142.5 153 55.6
Sc10g0002470 Simmondsia chinensis HOM05D007292 ORTHO05D009084 4.6e-32 142.5 173 52.0
A09p48960 Brassica napus HOM05D007292 ORTHO05D009084 1.0e-31 141.4 118 65.3
C08p31330 Brassica napus HOM05D007292 ORTHO05D009084 1.0e-31 141.4 118 65.3
BolC8t50754H Brassica oleracea HOM05D007292 ORTHO05D009084 1.0e-31 141.4 118 65.3
BraA09t40351Z Brassica rapa HOM05D007292 ORTHO05D009084 1.0e-31 141.4 118 65.3
CARHR166090 Cardamine hirsuta HOM05D007292 ORTHO05D009084 3.0e-31 139.8 241 43.2
AT3G56010 Arabidopsis thaliana HOM05D007292 ORTHO05D009084 6.6e-31 138.7 153 54.9
C04p36460 Brassica napus HOM05D007292 ORTHO05D009084 8.7e-31 138.3 139 59.0
BolC4t25149H Brassica oleracea HOM05D007292 ORTHO05D009084 8.7e-31 138.3 139 59.0
AL5G37290 Arabidopsis lyrata HOM05D007292 ORTHO05D009084 1.1e-30 137.9 151 52.3
Thhalv10006239m.g Eutrema salsugineum HOM05D007292 ORTHO05D009084 1.1e-30 137.9 153 52.9
SalBow5G0252 Salvia bowleyana HOM05D007292 ORTHO05D009084 1.1e-30 137.9 249 44.6
BcaC02g09799 Brassica carinata HOM05D007292 ORTHO05D009084 1.9e-30 137.1 139 59.0
A04p04080 Brassica napus HOM05D007292 ORTHO05D009084 1.9e-30 137.1 118 64.4
BcaB01g00041 Brassica carinata HOM05D007292 ORTHO05D009084 1.2e-29 134.4 173 51.4
Hma1.2p1_2705F.1_g327170 Hydrangea macrophylla HOM05D001399 ORTHO05D001670 1.6e-29 134.0 179 54.7
THA.LOC104824327 Tarenaya hassleriana HOM05D007292 ORTHO05D009084 2.8e-29 133.3 250 42.4
ECA238G0254 Erigeron canadensis HOM05D007292 ORTHO05D009084 3.6e-29 132.9 197 48.7
Migut.F01485 Erythranthe guttata HOM05D007292 ORTHO05D009084 3.1e-28 129.8 252 39.7
HanXRQChr14g0459531 Helianthus annuus HOM05D007292 ORTHO05D009084 3.1e-28 129.8 132 57.6
Nn2g13181 Nelumbo nucifera HOM05D007292 ORTHO05D009084 1.5e-27 127.5 226 45.6
THA.LOC104811239 Tarenaya hassleriana HOM05D007292 ORTHO05D009084 8.4e-26 121.7 178 44.9
DCAR_011829 Daucus carota HOM05D007292 ORTHO05D009084 1.4e-25 120.9 245 40.8
Zm00001eb013500 Zea mays HOM05D007292 ORTHO05D009084 6.0e-24 115.5 213 39.9
Os03g0293100 Oryza sativa ssp. japonica HOM05D007292 ORTHO05D009084 8.7e-23 111.7 133 50.4
Sabra10G0144000 Salix brachista HOM05D007292 ORTHO05D009084 1.1e-22 111.3 169 48.5
COL.COLO4_25767 Corchorus olitorius HOM05D004762 ORTHO05D005972 1.5e-22 110.9 162 48.1
BcaB02g08388 Brassica carinata HOM05D007292 ORTHO05D009084 1.6e-21 107.5 81 66.7
SGA_v2.0_scaffold378G50330 Striga asiatica HOM05D007292 ORTHO05D009084 2.8e-13 80.1 184 39.7
SEGI_20884 Sequoiadendron giganteum HOM05D007292 ORTHO05D009084 3.7e-13 79.7 194 34.0
CDE04G1468 Ceratophyllum demersum HOM05D000652 ORTHO05D009084 4.0e-12 76.3 181 36.5
Lj8C64T12 Lonicera japonica HOM05D007292 ORTHO05D009084 2.6e-11 73.6 169 42.0


User provided reference genes

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