Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN01G0719 Fragaria x ananassa HOM05D004732 ORTHO05D005424 4.9e-143 511.1 264 100.0
FAN03G2537 Fragaria x ananassa HOM05D004732 ORTHO05D005424 2.5e-139 498.8 264 97.7
FAN10G1669 Fragaria x ananassa HOM05D004732 ORTHO05D005424 8.1e-138 493.8 263 97.3
FAN10G0773 Fragaria x ananassa HOM05D004732 ORTHO05D005424 5.3e-137 491.1 264 96.6
FvH4_7g18740 Fragaria vesca HOM05D004732 ORTHO05D005424 1.3e-135 486.5 264 96.2
FAN06G4015 Fragaria x ananassa HOM05D004732 ORTHO05D005424 3.8e-135 485.0 264 95.8
FAN06G4691 Fragaria x ananassa HOM05D004732 ORTHO05D005424 3.8e-135 485.0 264 95.8
RcHm_v2.0_Chr1g0362511 Rosa chinensis HOM05D004732 ORTHO05D005424 5.3e-129 464.5 264 91.3
Prupe.2G208500 Prunus persica HOM05D004732 ORTHO05D005424 3.9e-108 395.2 262 77.5
MD01G1102900 Malus domestica HOM05D004732 ORTHO05D005424 3.5e-96 355.5 262 70.2
QL08p054295 Quercus lobata HOM05D004732 ORTHO05D005424 5.9e-96 354.8 272 69.5
CiPaw.01G268400 Carya illinoinensis HOM05D004732 ORTHO05D005424 6.1e-93 344.7 269 67.3
Cfa001806 Carpinus fangiana HOM05D004732 ORTHO05D005424 1.4e-89 333.6 277 64.3
CSS0011754 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 3.5e-88 328.9 263 65.8
Dinv36389 Davidia involucrata HOM05D004732 ORTHO05D005424 4.5e-88 328.6 270 64.8
Haze_16742 Corylus avellana HOM05D004732 ORTHO05D005424 1.0e-87 327.4 280 63.2
CSS0002562 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 1.3e-87 327.0 263 65.4
CANSAT56G1580 Cannabis sativa HOM05D004732 ORTHO05D005424 2.5e-86 322.8 266 66.2
GSVIVG01016214001 Vitis vinifera HOM05D004732 ORTHO05D005424 9.4e-86 320.9 262 66.0
Thecc.10G084000 Theobroma cacao HOM05D004732 ORTHO05D005424 1.2e-85 320.5 270 64.1
Dinv31236 Davidia involucrata HOM05D004732 ORTHO05D005424 2.6e-83 312.8 269 63.9
COL.COLO4_34217 Corchorus olitorius HOM05D004732 ORTHO05D005424 1.7e-82 310.1 271 62.0
Duzib106G0451 Durio zibethinus HOM05D004732 ORTHO05D005424 2.8e-82 309.3 271 63.5
Duzib114G0073 Durio zibethinus HOM05D004732 ORTHO05D005424 3.7e-82 308.9 271 62.7
CiPaw.02G171900 Carya illinoinensis HOM05D004732 ORTHO05D005424 3.1e-81 305.8 268 63.4
TWI63G1095 Tripterygium wilfordii HOM05D004732 ORTHO05D005424 9.2e-81 304.3 266 62.8
Gohir.D06G176100 Gossypium hirsutum HOM05D004732 ORTHO05D005424 2.7e-80 302.8 260 64.2
Gohir.A06G168400 Gossypium hirsutum HOM05D004732 ORTHO05D005424 5.9e-80 301.6 260 64.2
Hma1.2p1_0145F.1_g065340 Hydrangea macrophylla HOM05D004732 ORTHO05D005424 2.3e-79 299.7 261 64.4
Ciclev10033517m.g Citrus clementina HOM05D004732 ORTHO05D005424 3.8e-79 298.9 281 60.1
Atru.chr12.848 Acer truncatum HOM05D004732 ORTHO05D005424 3.6e-77 292.4 268 60.4
Manes.10G050600 Manihot esculenta HOM05D004732 ORTHO05D005424 4.7e-77 292.0 260 58.8
Gorai.010G207000 Gossypium raimondii HOM05D004732 ORTHO05D005424 8.0e-77 291.2 255 62.0
Potri.010G227400 Populus trichocarpa HOM05D004732 ORTHO05D005424 8.0e-77 291.2 262 62.2
Sabra08G0023400 Salix brachista HOM05D004732 ORTHO05D005424 1.0e-76 290.8 259 61.8
Actinidia18609 Actinidia chinensis HOM05D004732 ORTHO05D005424 3.0e-76 289.3 260 59.6
Cpa.g.sc53.137 Carica papaya HOM05D004732 ORTHO05D005424 1.5e-75 287.0 260 60.0
Sed0004517 Sechium edule HOM05D004732 ORTHO05D005424 1.5e-75 287.0 265 59.6
vmacro07120 Vaccinium macrocarpon HOM05D004732 ORTHO05D005424 5.7e-75 285.0 258 59.3
ClCG08G007740 Citrullus lanatus HOM05D004732 ORTHO05D005424 1.7e-74 283.5 265 60.0
RhsimUnG0118800 Rhododendron simsii HOM05D004732 ORTHO05D005424 2.9e-74 282.7 256 59.8
MELO3C019827.2 Cucumis melo HOM05D004732 ORTHO05D005424 8.3e-74 281.2 263 58.9
Manes.07G133148 Manihot esculenta HOM05D004732 ORTHO05D005424 2.4e-73 279.6 264 56.4
Sabra10G0175400 Salix brachista HOM05D004732 ORTHO05D005424 3.2e-73 279.3 263 60.8
RcHm_v2.0_Chr1g0384391 Rosa chinensis HOM05D004732 ORTHO05D005424 7.0e-73 278.1 166 88.0
CSS0026895 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 1.6e-72 276.9 244 61.5
Eucgr.G02869 Eucalyptus grandis HOM05D004732 ORTHO05D005424 3.5e-72 275.8 273 55.7
Duzib128G0895 Durio zibethinus HOM05D004732 ORTHO05D005424 5.9e-72 275.0 271 60.1
Potri.008G035000 Populus trichocarpa HOM05D004732 ORTHO05D005424 7.8e-72 274.6 259 59.1
TAR375G0434 Trochodendron aralioides HOM05D004732 ORTHO05D005424 5.0e-71 271.9 257 58.8
arahy.Tifrunner.gnm1.ann1.94M352 Arachis hypogaea HOM05D004732 ORTHO05D005424 8.6e-71 271.2 266 57.5
arahy.Tifrunner.gnm1.ann1.02EZ4F Arachis hypogaea HOM05D004732 ORTHO05D005424 1.2e-69 267.3 263 57.0
MBI02_g03608_MAGBIO Magnolia biondii HOM05D004732 ORTHO05D005424 1.2e-69 267.3 271 54.2
PGR142G3551 Punica granatum HOM05D004732 ORTHO05D005424 1.2e-69 267.3 269 58.0
CSS0018200 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 6.2e-69 265.0 230 60.9
CSS0040483 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 8.0e-69 264.6 230 60.4
Glyma.10G207600 Glycine max HOM05D004732 ORTHO05D005424 2.3e-68 263.1 269 55.4
Peaxi162Scf00145g01111 Petunia axillaris HOM05D004732 ORTHO05D005424 1.2e-67 260.8 261 55.6
Solyc11g008310.3 Solanum lycopersicum HOM05D004732 ORTHO05D005424 2.6e-67 259.6 262 53.1
Nitab4.5_0001450g0120 Nicotiana tabacum HOM05D004732 ORTHO05D005424 3.4e-67 259.2 259 54.1
CAN.G321.58 Capsicum annuum HOM05D004732 ORTHO05D005424 2.2e-66 256.5 265 52.5
DCAR_019084 Daucus carota HOM05D004732 ORTHO05D005424 2.9e-66 256.1 271 54.2
PGSC0003DMG400007420 Solanum tuberosum HOM05D004732 ORTHO05D005424 2.9e-66 256.1 262 52.7
Sopen11g004120 Solanum pennellii HOM05D004732 ORTHO05D005424 3.7e-66 255.8 262 52.7
CsaV3_6G036730 Cucumis sativus L. HOM05D004732 ORTHO05D005424 4.9e-66 255.4 244 57.8
MSTRG.9148 Avicennia marina HOM05D004732 ORTHO05D005424 6.4e-66 255.0 251 55.8
Nitab4.5_0006187g0020 Nicotiana tabacum HOM05D004732 ORTHO05D005424 7.0e-65 251.5 259 52.9
Nn3g18730 Nelumbo nucifera HOM05D004732 ORTHO05D005424 1.2e-64 250.8 260 54.6
Oeu013844.1 Olea europaea HOM05D004732 ORTHO05D005424 3.5e-64 249.2 254 54.3
Psat6g179960 Pisum sativum HOM05D004732 ORTHO05D005424 1.7e-63 246.9 268 53.4
Lalb_Chr03g0036231 Lupinus albus HOM05D004732 ORTHO05D005424 3.0e-63 246.1 264 56.1
Medtr1g094180 Medicago truncatula HOM05D004732 ORTHO05D005424 5.0e-63 245.4 268 52.6
Migut.F01953 Erythranthe guttata HOM05D004732 ORTHO05D005424 6.6e-63 245.0 253 56.1
Cc02_g10890 Coffea canephora HOM05D004732 ORTHO05D005424 8.6e-63 244.6 247 53.4
Actinidia06737 Actinidia chinensis HOM05D004732 ORTHO05D005424 1.5e-62 243.8 220 61.4
TPR.G10292 Trifolium pratense HOM05D004732 ORTHO05D005424 2.5e-62 243.0 268 55.6
TWI38G0470 Tripterygium wilfordii HOM05D004732 ORTHO05D005424 3.6e-61 239.2 173 68.2
Psat6g092840 Pisum sativum HOM05D004732 ORTHO05D005424 1.4e-60 237.3 261 53.6
SalBow4G1144 Salvia bowleyana HOM05D004732 ORTHO05D005424 1.4e-60 237.3 265 52.5
VMungo0720G2178 Vigna mungo HOM05D004732 ORTHO05D005424 3.1e-60 236.1 269 51.3
Aqoxy5G04328 Aquilegia oxysepala HOM05D004732 ORTHO05D005424 5.2e-60 235.3 253 52.6
Medtr1g050538 Medicago truncatula HOM05D004732 ORTHO05D005424 5.2e-60 235.3 251 53.0
Phvul.007G099100 Phaseolus vulgaris HOM05D004732 ORTHO05D005424 2.6e-59 233.0 270 49.3
Nitab4.5_0001359g0060 Nicotiana tabacum HOM05D004732 ORTHO05D005424 9.8e-59 231.1 257 49.4
Ca_10542_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 2.2e-58 229.9 269 52.0
Ca_15771_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 2.2e-58 229.9 269 52.0
Gohir.D10G210533 Gossypium hirsutum HOM05D004732 ORTHO05D005424 4.9e-58 228.8 277 46.9
Lj5g0023337 Lotus japonicus HOM05D004732 ORTHO05D005424 8.3e-58 228.0 271 49.8
Gorai.011G236000 Gossypium raimondii HOM05D004732 ORTHO05D005424 1.9e-57 226.9 274 47.1
DCAR_006412 Daucus carota HOM05D004732 ORTHO05D005424 3.5e-56 222.6 260 48.8
Ah.05g176860 Amaranthus hybridus HOM05D004732 ORTHO05D005424 4.6e-56 222.2 250 49.6
Lalb_Chr02g0152071 Lupinus albus HOM05D004732 ORTHO05D005424 4.6e-56 222.2 274 47.8
TPR.G29265 Trifolium pratense HOM05D004732 ORTHO05D005424 7.8e-56 221.5 253 50.6
Thhalv10017199m.g Eutrema salsugineum HOM05D004732 ORTHO05D005424 3.0e-55 219.5 249 52.6
PSO782G0035 Papaver somniferum HOM05D004732 ORTHO05D005424 3.9e-55 219.2 254 51.2
CDE12G0653 Ceratophyllum demersum HOM05D004732 ORTHO05D005424 8.6e-55 218.0 254 46.9
Sc15g0007120 Simmondsia chinensis HOM05D000232 ORTHO05D000145 1.5e-54 217.2 252 50.0
EL10Ac1g00627 Beta vulgaris HOM05D004732 ORTHO05D005424 2.5e-54 216.5 254 50.8
Aa31LG5G20320 Aethionema arabicum HOM05D004732 ORTHO05D005424 3.3e-54 216.1 264 51.9
HanXRQChr08g0218501 Helianthus annuus HOM05D004732 ORTHO05D005424 4.3e-54 215.7 253 52.2
Gohir.A10G202350 Gossypium hirsutum HOM05D004732 ORTHO05D005424 9.5e-54 214.5 256 47.3
AUR62034508 Chenopodium quinoa HOM05D004732 ORTHO05D005424 2.1e-53 213.4 265 49.8
AUR62014489 Chenopodium quinoa HOM05D004732 ORTHO05D005424 3.6e-53 212.6 262 49.6
Sp4g21500 Schrenkiella parvula HOM05D004732 ORTHO05D005424 3.6e-53 212.6 249 51.4
Hund26901 Selenicereus undatus HOM05D004732 ORTHO05D005424 3.6e-53 212.6 251 50.2
Nitab4.5_0000096g0300 Nicotiana tabacum HOM05D004732 ORTHO05D005424 6.2e-53 211.8 202 56.4
Peaxi162Scf00253g00036 Petunia axillaris HOM05D004732 ORTHO05D005424 4.0e-52 209.1 248 46.8
Glyma.10G096300 Glycine max HOM05D004732 ORTHO05D005424 5.2e-52 208.8 261 49.8
Nitab4.5_0001760g0030 Nicotiana tabacum HOM05D004732 ORTHO05D005424 2.0e-51 206.8 204 53.9
PSO063G3184 Papaver somniferum HOM05D004732 ORTHO05D005424 2.6e-51 206.5 254 49.6
A03p21880 Brassica napus HOM05D004732 ORTHO05D005424 3.4e-51 206.1 260 48.8
BraA03t11424Z Brassica rapa HOM05D004732 ORTHO05D005424 3.4e-51 206.1 260 48.8
Phvul.007G246300 Phaseolus vulgaris HOM05D004732 ORTHO05D005424 3.4e-51 206.1 250 50.8
AT2G39170 Arabidopsis thaliana HOM05D004732 ORTHO05D005424 4.4e-51 205.7 249 49.0
THA.LOC104825219 Tarenaya hassleriana HOM05D004732 ORTHO05D005424 4.4e-51 205.7 268 48.9
CARHR133920 Cardamine hirsuta HOM05D004732 ORTHO05D005424 5.8e-51 205.3 258 48.8
unitig_37.g12315 Utricularia gibba HOM05D004732 ORTHO05D005424 9.9e-51 204.5 251 50.2
C03p25950 Brassica napus HOM05D004732 ORTHO05D005424 1.3e-50 204.1 262 48.1
BolC3t14980H Brassica oleracea HOM05D004732 ORTHO05D005424 2.9e-50 203.0 251 49.4
Nitab4.5_0001278g0020 Nicotiana tabacum HOM05D004732 ORTHO05D005424 6.4e-50 201.8 248 46.4
Lsat_1_v5_gn_8_20841 Lactuca sativa HOM05D004732 ORTHO05D005424 5.4e-49 198.7 249 47.0
Peaxi162Scf00176g00155 Petunia axillaris HOM05D004732 ORTHO05D005424 9.2e-49 198.0 199 53.3
AL4G36450 Arabidopsis lyrata HOM05D004732 ORTHO05D005424 1.6e-48 197.2 250 48.4
Carub.0004s2121 Capsella rubella HOM05D004732 ORTHO05D005424 2.7e-48 196.4 249 47.8
BcaB01g03649 Brassica carinata HOM05D004732 ORTHO05D005424 7.8e-48 194.9 260 45.0
Os08g0152500 Oryza sativa ssp. japonica HOM05D004732 ORTHO05D005424 1.0e-47 194.5 253 46.2
VMungo0720G2855 Vigna mungo HOM05D004732 ORTHO05D005424 1.7e-47 193.7 262 48.1
Sopen05g034010 Solanum pennellii HOM05D004732 ORTHO05D005424 6.6e-47 191.8 194 54.1
PGSC0003DMG400044193 Solanum tuberosum HOM05D004732 ORTHO05D005424 6.6e-47 191.8 195 51.3
PGSC0003DMG402023369 Solanum tuberosum HOM05D004732 ORTHO05D005424 6.6e-47 191.8 195 51.3
Sopen02g011450 Solanum pennellii HOM05D000461 ORTHO05D005424 3.3e-46 189.5 227 49.3
BcaC02g12913 Brassica carinata HOM05D004732 ORTHO05D005424 5.6e-46 188.7 255 45.9
Solyc02g033070.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 1.2e-45 187.6 194 52.6
Zm00001eb416240 Zea mays HOM05D004732 ORTHO05D005424 1.1e-44 184.5 254 43.7
Lj5g0007347 Lotus japonicus HOM05D004732 ORTHO05D005424 2.9e-42 176.4 262 43.9
CSS0002308 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 3.8e-42 176.0 209 53.1
Ca_10759_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 1.9e-41 173.7 116 70.7
ATR0810G210 Amborella trichopoda HOM05D004732 ORTHO05D005424 4.6e-40 169.1 273 40.3
CAN.G694.37 Capsicum annuum HOM05D004732 ORTHO05D005424 1.0e-39 167.9 158 51.9
Glyma.02G159000 Glycine max HOM05D004732 ORTHO05D005424 1.0e-39 167.9 117 68.4
CDE04G0408 Ceratophyllum demersum HOM05D004732 ORTHO05D005424 1.7e-39 167.2 150 56.0
SGA_v2.0_scaffold13G06383 Striga asiatica HOM05D002264 ORTHO05D002413 3.0e-39 166.4 252 42.9
Peaxi162Scf00253g00416 Petunia axillaris HOM05D004732 ORTHO05D005424 6.6e-39 165.2 220 43.2
Lj2C21T4 Lonicera japonica HOM05D004732 ORTHO05D005424 2.5e-38 163.3 244 44.7
CSS0029312 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 5.3e-36 155.6 105 73.3
HanXRQChr12g0368861 Helianthus annuus HOM05D004732 ORTHO05D005424 2.9e-34 149.8 125 58.4
Solyc05g024140.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 3.0e-31 139.8 131 51.9
HPP92_012913 Vanilla planifolia HOM05D001191 ORTHO05D000979 1.1e-25 121.3 108 53.7
Sopen05g019060 Solanum pennellii HOM05D004732 ORTHO05D005424 1.2e-24 117.9 125 45.6
Solyc05g055560.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 2.5e-22 110.2 82 68.3
HPP92_012890 Vanilla planifolia HOM05D004732 ORTHO05D005424 4.5e-19 99.4 249 32.5
Solyc05g024170.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 3.5e-16 89.7 70 60.0
Pp3c13_19230 Physcomitrium patens HOM05D004732 ORTHO05D005424 5.1e-15 85.9 83 50.6
AagrBONN_evm.TU.Sc2ySwM_117.3369 Anthoceros agrestis HOM05D004732 ORTHO05D005424 1.3e-13 81.3 90 41.1
SMO141G0002 Selaginella moellendorffii HOM05D004732 ORTHO05D005424 4.8e-13 79.3 281 26.3
SEGI_03345 Sequoiadendron giganteum HOM05D004732 ORTHO05D005424 3.4e-11 73.2 142 33.1
CBR_g30284 Chara braunii HOM05D000004 ORTHO05D000002 6.5e-10 68.9 169 26.6


User provided reference genes

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