Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN01G0616 Fragaria x ananassa HOM05D007090 ORTHO05D008993 5.0e-132 474.9 339 100.0
FAN10G1641 Fragaria x ananassa HOM05D007090 ORTHO05D008993 4.4e-112 408.7 339 80.8
FAN06G0781 Fragaria x ananassa HOM05D007090 ORTHO05D008993 4.9e-103 378.6 340 77.6
FvH4_7g11100 Fragaria vesca HOM05D007090 ORTHO05D008993 1.2e-96 357.5 340 75.3
FAN06G2008 Fragaria x ananassa HOM05D007090 ORTHO05D008993 3.9e-92 342.4 340 73.2
FAN03G3027 Fragaria x ananassa HOM05D007090 ORTHO05D008993 2.2e-87 326.6 443 55.1
RcHm_v2.0_Chr1g0349121 Rosa chinensis HOM05D007090 ORTHO05D008993 7.1e-78 295.0 343 67.6
FAN10G4025 Fragaria x ananassa HOM05D007090 ORTHO05D008993 8.2e-66 255.0 220 67.3
Prupe.2G138200 Prunus persica HOM05D007090 ORTHO05D008993 5.9e-56 222.2 370 49.5
MD02G1210400 Malus domestica HOM05D007090 ORTHO05D008993 1.1e-46 191.4 357 47.9
Potri.014G060700 Populus trichocarpa HOM05D007090 ORTHO05D008993 3.8e-39 166.4 337 41.8
Thecc.01G382600 Theobroma cacao HOM05D007090 ORTHO05D008993 1.9e-38 164.1 324 45.1
CiPaw.13G032600 Carya illinoinensis HOM05D007090 ORTHO05D008993 7.2e-38 162.2 354 38.1
CANSAT56G4322 Cannabis sativa HOM05D007090 ORTHO05D008993 2.7e-37 160.2 336 42.3
QL04p038719 Quercus lobata HOM05D007090 ORTHO05D008993 3.6e-37 159.8 375 41.3
CANSAT56G0199 Cannabis sativa HOM05D007090 ORTHO05D008993 3.0e-36 156.8 336 42.0
VMungo0331G0297 Vigna mungo HOM05D007090 ORTHO05D008993 6.7e-36 155.6 348 44.8
Phvul.010G072500 Phaseolus vulgaris HOM05D007090 ORTHO05D008993 5.7e-35 152.5 332 43.7
Glyma.03G032000 Glycine max HOM05D007090 ORTHO05D008993 1.7e-34 151.0 358 45.8
Lj3g0011300 Lotus japonicus HOM05D007090 ORTHO05D008993 6.3e-34 149.1 361 41.3
Haze_02682 Corylus avellana HOM05D007090 ORTHO05D008993 1.1e-33 148.3 334 41.0
Gohir.D11G083500 Gossypium hirsutum HOM05D007090 ORTHO05D008993 1.8e-33 147.5 327 45.9
TPR.G4946 Trifolium pratense HOM05D007090 ORTHO05D008993 1.8e-33 147.5 327 45.0
Ca_19835_v3 Cicer arietinum L. HOM05D007090 ORTHO05D008993 2.4e-33 147.1 346 44.8
COL.COLO4_12490 Corchorus olitorius HOM05D007090 ORTHO05D008993 3.1e-33 146.7 342 44.4
Lalb_Chr12g0207911 Lupinus albus HOM05D007090 ORTHO05D008993 5.3e-33 146.0 354 37.9
Manes.05G048800 Manihot esculenta HOM05D007090 ORTHO05D008993 1.2e-32 144.8 328 45.1
Sc26g0001310 Simmondsia chinensis HOM05D007090 ORTHO05D008993 2.0e-32 144.1 357 39.8
Lsat_1_v5_gn_4_45521 Lactuca sativa HOM05D007090 ORTHO05D008993 2.7e-32 143.7 352 34.9
vmacro13441 Vaccinium macrocarpon HOM05D007090 ORTHO05D008993 2.7e-32 143.7 403 32.0
Migut.N01613 Erythranthe guttata HOM05D007090 ORTHO05D008993 1.0e-31 141.7 305 39.7
TAR375G0613 Trochodendron aralioides HOM05D007090 ORTHO05D008993 8.5e-31 138.7 362 34.5
arahy.Tifrunner.gnm1.ann1.UP4D5N Arachis hypogaea HOM05D007090 ORTHO05D008993 1.1e-30 138.3 327 43.4
Eucgr.E01513 Eucalyptus grandis HOM05D007090 ORTHO05D008993 1.1e-30 138.3 360 41.4
HanXRQChr03g0088131 Helianthus annuus HOM05D007090 ORTHO05D008993 1.1e-30 138.3 356 39.0
Atru.chr5.252 Acer truncatum HOM05D007090 ORTHO05D008993 1.9e-30 137.5 350 44.6
CsaV3_6G008990 Cucumis sativus L. HOM05D007090 ORTHO05D008993 5.5e-30 136.0 337 34.1
Nitab4.5_0000859g0240 Nicotiana tabacum HOM05D007090 ORTHO05D008993 5.5e-30 136.0 343 35.9
Medtr4g026500 Medicago truncatula HOM05D007090 ORTHO05D008993 7.2e-30 135.6 347 45.0
GSVIVG01027682001 Vitis vinifera HOM05D007090 ORTHO05D008993 1.6e-29 134.4 348 37.4
CSS0011917 Camellia sinensis var. sinensis HOM05D007090 ORTHO05D008993 2.7e-29 133.7 219 39.3
MSTRG.4910 Avicennia marina HOM05D007090 ORTHO05D008993 6.1e-29 132.5 368 40.2
Cc02_g24410 Coffea canephora HOM05D007090 ORTHO05D008993 6.1e-29 132.5 348 38.2
Psat7g236160 Pisum sativum HOM05D007090 ORTHO05D008993 8.0e-29 132.1 346 45.1
SalBow5G5305 Salvia bowleyana HOM05D007090 ORTHO05D008993 1.0e-28 131.7 337 39.8
PGR042G2604 Punica granatum HOM05D007090 ORTHO05D008993 2.3e-28 130.6 340 36.5
vmacro22435 Vaccinium macrocarpon HOM05D007090 ORTHO05D008993 2.6e-27 127.1 227 37.4
Ciclev10021511m.g Citrus clementina HOM05D007090 ORTHO05D008993 4.4e-27 126.3 321 39.6
Duzib138G0673 Durio zibethinus HOM05D007090 ORTHO05D008993 4.4e-27 126.3 367 36.5
PSO782G4184 Papaver somniferum HOM05D007090 ORTHO05D008993 9.8e-27 125.2 338 33.1
Ah.08g212650 Amaranthus hybridus HOM05D007090 ORTHO05D008993 1.3e-26 124.8 356 39.0
Hund17045 Selenicereus undatus HOM05D007090 ORTHO05D008993 4.8e-26 122.9 326 37.1
Sabra14G0044500 Salix brachista HOM05D007090 ORTHO05D008993 1.4e-25 121.3 337 37.1
PSO063G1752 Papaver somniferum HOM05D007090 ORTHO05D008993 3.1e-25 120.2 337 29.1
Actinidia22817 Actinidia chinensis HOM05D007090 ORTHO05D008993 1.2e-24 118.2 336 38.7
Gorai.007G089100 Gossypium raimondii HOM05D007090 ORTHO05D008993 1.6e-24 117.9 327 42.5
unitig_748.g7116 Utricularia gibba HOM05D007090 ORTHO05D008993 2.7e-24 117.1 329 31.3
THA.LOC104803743 Tarenaya hassleriana HOM05D007090 ORTHO05D008993 3.5e-24 116.7 344 36.9
Rhsim07G0031100 Rhododendron simsii HOM05D007090 ORTHO05D008993 4.5e-24 116.3 352 36.1
arahy.Tifrunner.gnm1.ann1.KQM8V4 Arachis hypogaea HOM05D007090 ORTHO05D008993 7.7e-24 115.5 309 38.2
Actinidia22762 Actinidia chinensis HOM05D007090 ORTHO05D008993 1.0e-23 115.2 306 39.5
Aqoxy5G03901 Aquilegia oxysepala HOM05D007090 ORTHO05D008993 5.0e-23 112.8 320 40.9
DCAR_015886 Daucus carota HOM05D007090 ORTHO05D008993 3.3e-22 110.2 329 36.8
Sp6g00210 Schrenkiella parvula HOM05D007090 ORTHO05D008993 5.5e-22 109.4 331 32.9
Thhalv10028898m.g Eutrema salsugineum HOM05D007090 ORTHO05D008993 7.2e-22 109.0 305 34.1
Os04g0534300 Oryza sativa ssp. japonica HOM05D007090 ORTHO05D008993 1.4e-20 104.8 331 38.4
ATR0317G013 Amborella trichopoda HOM05D007090 ORTHO05D008993 5.2e-20 102.8 221 34.4
Aa31LG5G170 Aethionema arabicum HOM05D007090 ORTHO05D008993 6.8e-20 102.4 342 31.6
EL10Ac1g00840 Beta vulgaris HOM05D007090 ORTHO05D008993 2.6e-19 100.5 215 32.6
Nn1g01037 Nelumbo nucifera HOM05D007090 ORTHO05D008993 2.6e-19 100.5 363 32.2
MELO3C022245.2 Cucumis melo HOM05D007090 ORTHO05D008993 3.4e-19 100.1 337 32.0
Sopen01g036660 Solanum pennellii HOM05D007090 ORTHO05D008993 1.7e-18 97.8 346 32.9
SGA_v2.0_scaffold11G05536 Striga asiatica HOM05D007090 ORTHO05D008993 1.7e-18 97.8 336 28.6
Eucgr.E01517 Eucalyptus grandis HOM05D007090 ORTHO05D008993 2.2e-18 97.4 107 48.6
AT1G73440 Arabidopsis thaliana HOM05D007090 ORTHO05D008993 2.8e-18 97.1 336 36.3
AL6G53360 Arabidopsis lyrata HOM05D007090 ORTHO05D008993 3.7e-18 96.7 326 33.7
CARHR248180 Cardamine hirsuta HOM05D007090 ORTHO05D008993 1.1e-17 95.1 328 39.0
Oeu051923.2 Olea europaea HOM05D007090 ORTHO05D008993 1.8e-17 94.4 322 33.5
TWI23G0238 Tripterygium wilfordii HOM05D007090 ORTHO05D008993 4.1e-17 93.2 365 27.7
ECA234G0545 Erigeron canadensis HOM05D007090 ORTHO05D008993 9.2e-17 92.0 322 33.5
Dinv44119 Davidia involucrata HOM05D007090 ORTHO05D008993 1.2e-16 91.7 328 36.6
Peaxi162Scf00803g00118 Petunia axillaris HOM05D007090 ORTHO05D008993 2.7e-16 90.5 207 32.4
Solyc01g090920.3 Solanum lycopersicum HOM05D007090 ORTHO05D008993 2.7e-16 90.5 356 33.1
CAN.G1469.17 Capsicum annuum HOM05D007090 ORTHO05D008993 4.5e-16 89.7 339 33.9
Hma1.2p1_0005F.1_g004490 Hydrangea macrophylla HOM05D007090 ORTHO05D008993 7.8e-16 89.0 341 37.8
PGSC0003DMG400025974 Solanum tuberosum HOM05D007090 ORTHO05D008993 7.8e-16 89.0 341 36.4
ClCG06G002820 Citrullus lanatus HOM05D007090 ORTHO05D008993 5.0e-15 86.3 361 26.6
Carub.0006s3709 Capsella rubella HOM05D007090 ORTHO05D008993 8.6e-15 85.5 326 34.4
Gohir.A11G078900 Gossypium hirsutum HOM05D007090 ORTHO05D008993 2.5e-14 84.0 234 43.2
BcaB01g02215 Brassica carinata HOM05D007090 ORTHO05D008993 5.6e-14 82.8 326 38.7
CDE04G3442 Ceratophyllum demersum HOM05D007090 ORTHO05D008993 9.5e-14 82.0 341 26.4
Nitab4.5_0008963g0010 Nicotiana tabacum HOM05D007090 ORTHO05D008993 9.5e-14 82.0 352 26.1
BcaC04g24200 Brassica carinata HOM05D007090 ORTHO05D008993 1.6e-13 81.3 104 39.4
BolC9t52948H Brassica oleracea HOM05D007090 ORTHO05D008993 1.6e-13 81.3 104 39.4
Sed0010456 Sechium edule HOM05D007090 ORTHO05D008993 1.6e-13 81.3 312 31.1
CSS0004451 Camellia sinensis var. sinensis HOM05D007090 ORTHO05D008993 8.0e-13 79.0 219 30.6
A09p00730 Brassica napus HOM05D007090 ORTHO05D008993 5.2e-12 76.3 334 35.3
C09p00130 Brassica napus HOM05D007090 ORTHO05D008993 1.5e-11 74.7 334 34.1
BraA09t35687Z Brassica rapa HOM05D007090 ORTHO05D008993 1.5e-11 74.7 334 34.1
Cpa.g.sc49.155 Carica papaya HOM05D007090 ORTHO05D008993 2.0e-11 74.3 86 44.2
ECA234G4391 Erigeron canadensis HOM05D007090 ORTHO05D008993 2.0e-11 74.3 65 53.8
SEGI_04858 Sequoiadendron giganteum HOM05D007090 ORTHO05D008993 2.2e-10 70.9 56 50.0
Mapoly0035s0135 Marchantia polymorpha HOM05D007090 ORTHO05D008993 1.2e-08 65.1 56 51.8
Pp3c13_5390 Physcomitrium patens HOM05D007090 ORTHO05D008993 2.0e-08 64.3 54 46.3
CBR_g23736 Chara braunii HOM05D007090 ORTHO05D008993 3.5e-08 63.5 57 42.1
SMO137G0209 Selaginella moellendorffii HOM05D007090 ORTHO05D008993 2.5e-06 57.4 74 37.8
Actinidia12185 Actinidia chinensis HOM05D007090 ORTHO05D008993 5.6e-06 56.2 85 47.1
Lj7P535T24 Lonicera japonica HOM05D007090 ORTHO05D008993 7.3e-06 55.8 86 52.3


User provided reference genes

Program Settings