Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN01G0293 Fragaria x ananassa HOM05D006793 ORTHO05D003476 1.6e-269 932.2 480 100.0
FvH4_7g06800 Fragaria vesca HOM05D006793 ORTHO05D003476 1.0e-247 859.8 484 91.5
FAN06G1743 Fragaria x ananassa HOM05D006793 ORTHO05D003476 1.0e-247 859.8 484 91.5
FAN10G1411 Fragaria x ananassa HOM05D006793 ORTHO05D003476 1.5e-243 845.9 484 90.7
FAN03G3430 Fragaria x ananassa HOM05D006793 ORTHO05D003476 2.8e-221 771.9 441 90.7
RcHm_v2.0_Chr1g0336511 Rosa chinensis HOM05D006793 ORTHO05D003476 1.9e-209 732.6 482 80.7
MD02G1241700 Malus domestica HOM05D006793 ORTHO05D003476 9.6e-137 491.1 498 57.2
Prupe.2G095200 Prunus persica HOM05D006793 ORTHO05D003476 9.6e-129 464.5 494 54.9
MD07G1075000 Malus domestica HOM05D006793 ORTHO05D003476 1.4e-119 434.1 459 54.9
CANSAT56G4476 Cannabis sativa HOM05D006793 ORTHO05D003476 8.5e-85 318.5 501 45.3
QL08p052921 Quercus lobata HOM05D006793 ORTHO05D003476 7.0e-79 298.9 509 41.7
Cfa001770 Carpinus fangiana HOM05D006793 ORTHO05D003476 3.5e-78 296.6 520 40.6
Potri.008G029500 Populus trichocarpa HOM05D006793 ORTHO05D003476 3.6e-75 286.6 496 40.9
TAR636G1084 Trochodendron aralioides HOM05D006793 ORTHO05D003476 2.6e-73 280.4 490 40.0
MD02G1237300 Malus domestica HOM05D006793 ORTHO05D003476 9.8e-73 278.5 492 39.4
Ciclev10031613m.g Citrus clementina HOM05D006793 ORTHO05D003476 3.7e-72 276.6 499 40.1
Haze_16786 Corylus avellana HOM05D006793 ORTHO05D003476 4.1e-71 273.1 525 38.9
Sabra08G0019600 Salix brachista HOM05D006793 ORTHO05D003476 9.2e-71 271.9 489 40.1
Duzib128G0427 Durio zibethinus HOM05D006793 ORTHO05D003476 1.2e-70 271.6 497 38.6
CiPaw.01G264600 Carya illinoinensis HOM05D006793 ORTHO05D003476 1.6e-70 271.2 517 38.5
COL.COLO4_32868 Corchorus olitorius HOM05D006793 ORTHO05D003476 5.9e-70 269.2 548 36.9
Lalb_Chr21g0313091 Lupinus albus HOM05D006793 ORTHO05D003476 1.0e-69 268.5 513 36.6
Thecc.10G090800 Theobroma cacao HOM05D006793 ORTHO05D003476 1.7e-69 267.7 494 37.9
Duzib114G0110 Durio zibethinus HOM05D006793 ORTHO05D003476 2.3e-69 267.3 496 39.1
Gohir.A01G128900 Gossypium hirsutum HOM05D006793 ORTHO05D003476 2.9e-69 266.9 492 37.0
Gorai.002G144500 Gossypium raimondii HOM05D006793 ORTHO05D003476 5.0e-69 266.2 492 37.2
Phvul.007G141300 Phaseolus vulgaris HOM05D006793 ORTHO05D003476 1.5e-68 264.6 500 39.4
Gohir.D01G118500 Gossypium hirsutum HOM05D006793 ORTHO05D003476 5.6e-68 262.7 500 36.8
Atru.chr11.746 Acer truncatum HOM05D006793 ORTHO05D003476 2.8e-67 260.4 538 37.0
GSVIVG01005025001 Vitis vinifera HOM05D006793 ORTHO05D003476 4.7e-67 259.6 492 37.4
Manes.10G053400 Manihot esculenta HOM05D006793 ORTHO05D003476 2.6e-65 253.8 485 39.0
Sed0017585 Sechium edule HOM05D006793 ORTHO05D003476 1.3e-64 251.5 493 39.4
TAR633G2614 Trochodendron aralioides HOM05D006793 ORTHO05D009315 1.3e-64 251.5 519 38.7
TAR476G0002 Trochodendron aralioides HOM05D006793 ORTHO05D003476 8.3e-64 248.8 519 38.5
Glyma.20G190600 Glycine max HOM05D006793 ORTHO05D003476 1.4e-63 248.1 530 35.8
Rhsim03G0110800 Rhododendron simsii HOM05D006793 ORTHO05D003476 1.4e-63 248.1 531 37.3
Lj5g0011528 Lotus japonicus HOM05D006793 ORTHO05D003476 2.4e-63 247.3 520 37.3
Lalb_Chr02g0151171 Lupinus albus HOM05D006793 ORTHO05D003476 2.4e-63 247.3 518 35.3
Eucgr.G02731 Eucalyptus grandis HOM05D006793 ORTHO05D003476 1.2e-62 245.0 509 39.3
CsaV3_2G032770 Cucumis sativus L. HOM05D006793 ORTHO05D003476 1.3e-61 241.5 512 35.2
MELO3C019853.2 Cucumis melo HOM05D006793 ORTHO05D003476 2.3e-61 240.7 512 36.7
arahy.Tifrunner.gnm1.ann1.BT04C1 Arachis hypogaea HOM05D006793 ORTHO05D003476 3.9e-61 240.0 502 36.1
arahy.Tifrunner.gnm1.ann1.U5ZVAW Arachis hypogaea HOM05D006793 ORTHO05D003476 1.1e-60 238.4 502 36.1
Hma1.2p1_0454F.1_g156300 Hydrangea macrophylla HOM05D006793 ORTHO05D003476 1.5e-60 238.0 488 37.5
Glyma.10G199900 Glycine max HOM05D006793 ORTHO05D003476 5.6e-60 236.1 529 35.2
Manes.07G093300 Manihot esculenta HOM05D006793 ORTHO05D003476 2.1e-59 234.2 486 37.4
Nn2g13905 Nelumbo nucifera HOM05D006793 ORTHO05D003476 4.7e-59 233.0 489 36.8
Sabra10G0179700 Salix brachista HOM05D006793 ORTHO05D003476 1.0e-58 231.9 503 37.0
Actinidia06714 Actinidia chinensis HOM05D006793 ORTHO05D003476 1.8e-58 231.1 487 35.3
PSO339G4934 Papaver somniferum HOM05D006793 ORTHO05D003476 4.0e-58 229.9 485 35.5
VMungo0720G1705 Vigna mungo HOM05D006793 ORTHO05D003476 2.9e-56 223.8 518 35.1
Potri.010G231900 Populus trichocarpa HOM05D006793 ORTHO05D003476 2.0e-54 217.6 503 35.4
Nn6g35167 Nelumbo nucifera HOM05D006793 ORTHO05D003476 7.8e-54 215.7 486 34.2
Sopen11g003710 Solanum pennellii HOM05D006793 ORTHO05D003476 1.0e-53 215.3 537 32.0
Solyc11g007850.2 Solanum lycopersicum HOM05D006793 ORTHO05D003476 1.3e-53 214.9 537 33.1
PGR142G3005 Punica granatum HOM05D006793 ORTHO05D003476 3.0e-53 213.8 508 37.4
Dinv31270 Davidia involucrata HOM05D006793 ORTHO05D003476 3.9e-53 213.4 498 34.9
PSO801G0244 Papaver somniferum HOM05D006793 ORTHO05D003476 5.0e-53 213.0 487 34.3
Migut.F01893 Erythranthe guttata HOM05D006793 ORTHO05D003476 1.1e-52 211.8 487 34.7
Cc02_g10490 Coffea canephora HOM05D006793 ORTHO05D003476 3.3e-52 210.3 616 30.5
PGSC0003DMG400027329 Solanum tuberosum HOM05D006793 ORTHO05D003476 3.3e-52 210.3 536 33.2
Aqoxy2G01557 Aquilegia oxysepala HOM05D006793 ORTHO05D003476 4.3e-52 209.9 519 34.1
AUR62002713 Chenopodium quinoa HOM05D006793 ORTHO05D003476 6.2e-51 206.1 531 32.8
SalBow4G0791 Salvia bowleyana HOM05D006793 ORTHO05D003476 6.2e-51 206.1 497 34.6
TWI38G2135 Tripterygium wilfordii HOM05D006793 ORTHO05D003476 1.4e-50 204.9 572 31.3
ClCG08G007950 Citrullus lanatus HOM05D006793 ORTHO05D003476 6.8e-50 202.6 424 37.5
Nitab4.5_0006383g0010 Nicotiana tabacum HOM05D006793 ORTHO05D003476 6.8e-50 202.6 547 33.6
AUR62030173 Chenopodium quinoa HOM05D006793 ORTHO05D003476 5.8e-49 199.5 522 31.4
Nitab4.5_0000593g0350 Nicotiana tabacum HOM05D006793 ORTHO05D003476 7.5e-49 199.1 540 32.8
Dinv20859 Davidia involucrata HOM05D006793 ORTHO05D003476 1.1e-47 195.3 180 60.0
Peaxi162Scf00321g00037 Petunia axillaris HOM05D006793 ORTHO05D003476 1.1e-47 195.3 512 33.4
EL10Ac8g19653 Beta vulgaris HOM05D006793 ORTHO05D003476 2.4e-47 194.1 518 34.9
DCAR_019058 Daucus carota HOM05D006793 ORTHO05D003476 1.2e-46 191.8 517 31.1
MSTRG.404 Avicennia marina HOM05D006793 ORTHO05D003476 1.6e-46 191.4 539 33.2
TPR.G37771 Trifolium pratense HOM05D006793 ORTHO05D003476 3.5e-46 190.3 546 32.6
Medtr1g090853 Medicago truncatula HOM05D006793 ORTHO05D003476 2.3e-45 187.6 550 31.5
MSTRG.27506 Avicennia marina HOM05D006793 ORTHO05D003476 1.9e-44 184.5 538 30.9
THA.LOC104824314 Tarenaya hassleriana HOM05D006793 ORTHO05D003476 4.3e-44 183.3 558 30.1
SGA_v2.0_scaffold62G21362 Striga asiatica HOM05D006793 ORTHO05D003476 5.6e-44 183.0 501 31.7
Oeu060293.1 Olea europaea HOM05D006793 ORTHO05D003476 1.8e-42 177.9 539 33.2
Sc20g0001440 Simmondsia chinensis HOM05D006793 ORTHO05D003476 8.9e-42 175.6 290 40.3
ECA233G3433 Erigeron canadensis HOM05D006793 ORTHO05D003476 1.2e-41 175.3 490 33.7
Psat6g174040 Pisum sativum HOM05D006793 ORTHO05D003476 7.8e-38 162.5 167 53.9
AT3G52170 Arabidopsis thaliana HOM05D006793 ORTHO05D003476 1.0e-37 162.2 508 29.3
AL5G32750 Arabidopsis lyrata HOM05D006793 ORTHO05D003476 4.3e-36 156.8 520 29.6
MBI17_g07069_MAGBIO Magnolia biondii HOM05D006793 ORTHO05D003476 7.3e-36 156.0 527 28.7
CARHR161930 Cardamine hirsuta HOM05D006793 ORTHO05D003476 9.6e-36 155.6 511 30.5
Lsat_1_v5_gn_8_22741 Lactuca sativa HOM05D006793 ORTHO05D003476 3.6e-35 153.7 212 45.3
Sp5g10100 Schrenkiella parvula HOM05D006793 ORTHO05D003476 4.7e-35 153.3 528 28.8
Cpa.g.sc128.73 Carica papaya HOM05D006793 ORTHO05D003476 8.1e-35 152.5 175 46.3
Aa31LG10G7260 Aethionema arabicum HOM05D000145 ORTHO05D003476 1.8e-34 151.4 507 29.6
Carub.0005s1853 Capsella rubella HOM05D006793 ORTHO05D003476 5.2e-34 149.8 526 30.2
Thhalv10010306m.g Eutrema salsugineum HOM05D006793 ORTHO05D003476 2.6e-33 147.5 514 29.8
Sed0009649 Sechium edule HOM05D006793 ORTHO05D003476 3.4e-33 147.1 498 30.3
Lsat_1_v5_gn_2_103100 Lactuca sativa HOM05D006793 ORTHO05D003476 3.8e-32 143.7 295 36.6
BcaC02g09274 Brassica carinata HOM05D006793 ORTHO05D003476 1.9e-31 141.4 482 28.8
A03p48750 Brassica napus HOM05D006793 ORTHO05D003476 5.4e-31 139.8 500 30.2
CDE03G0520 Ceratophyllum demersum HOM05D048142 ORTHO05D003476 1.2e-30 138.7 541 30.5
C04p40750 Brassica napus HOM05D000992 ORTHO05D006704 4.6e-30 136.7 508 29.3
BolC4t25659H Brassica oleracea HOM05D000992 ORTHO05D006704 4.6e-30 136.7 508 29.3
A04p07200 Brassica napus HOM05D006793 ORTHO05D003476 7.8e-30 136.0 510 29.8
vmacro07208 Vaccinium macrocarpon HOM05D000992 ORTHO05D006704 5.1e-29 133.3 547 27.4
BraA03t13975Z Brassica rapa HOM05D006793 ORTHO05D003476 1.1e-28 132.1 505 30.1
BraA04t16415Z Brassica rapa HOM05D000992 ORTHO05D006704 5.6e-28 129.8 526 28.3
ECA238G3554 Erigeron canadensis HOM05D006793 ORTHO05D003476 6.4e-24 116.3 470 27.0
HPP92_027826 Vanilla planifolia HOM05D006793 ORTHO05D003476 1.1e-23 115.5 89 64.0
Ca_10462_v3 Cicer arietinum L. HOM05D001977 ORTHO05D002246 4.6e-22 110.2 487 26.3
CSS0025253 Camellia sinensis var. sinensis HOM05D006793 ORTHO05D000001 5.1e-21 106.7 331 31.4
unitig_899.g14485 Utricularia gibba HOM05D006793 ORTHO05D003476 5.1e-21 106.7 453 28.7
ATR1126G067 Amborella trichopoda HOM05D006793 ORTHO05D003476 8.7e-21 105.9 160 38.8
HanXRQChr14g0456191 Helianthus annuus HOM05D006793 ORTHO05D003476 3.3e-20 104.0 446 26.9
HanXRQChr12g0368421 Helianthus annuus HOM05D006793 ORTHO05D003476 1.2e-17 95.5 71 64.8
Zm00001eb137780 Zea mays HOM05D006793 ORTHO05D003476 1.2e-17 95.5 66 68.2
Zm00001eb410830 Zea mays HOM05D006793 ORTHO05D003476 7.6e-17 92.8 219 33.3
Os12g0528000 Oryza sativa ssp. japonica HOM05D006793 ORTHO05D003476 1.3e-16 92.0 172 37.2
CSS0050149 Camellia sinensis var. sinensis HOM05D006793 ORTHO05D003476 1.0e-13 82.4 317 28.4
SEGI_29881 Sequoiadendron giganteum HOM05D006793 ORTHO05D003476 5.1e-13 80.1 83 49.4
Dinv20860 Davidia involucrata HOM05D006793 ORTHO05D003476 7.4e-12 76.3 98 43.9
MSTRG.22259 Avicennia marina HOM05D008057 ORTHO05D003476 3.4e-09 67.4 79 39.2
Hma1.2p1_0016F.1_g010880 Hydrangea macrophylla HOM05D008057 ORTHO05D003476 2.2e-08 64.7 78 38.5
Cc00_g01550 Coffea canephora HOM05D008057 ORTHO05D003476 2.9e-08 64.3 73 43.8
MBI03_g11904_MAGBIO Magnolia biondii HOM05D008057 ORTHO05D003476 6.5e-08 63.2 82 36.6
THA.LOC104805620 Tarenaya hassleriana HOM05D012436 ORTHO05D003476 1.1e-07 62.4 115 31.3
TPR.G31356 Trifolium pratense HOM05D008057 ORTHO05D003476 1.4e-07 62.0 225 24.9
Cpa.g.sc124.3 Carica papaya HOM05D008057 ORTHO05D003476 1.9e-07 61.6 77 37.7
Migut.N02713 Erythranthe guttata HOM05D008057 ORTHO05D003476 4.2e-07 60.5 102 33.3
Gohir.A03G090600 Gossypium hirsutum HOM05D008057 ORTHO05D003476 5.5e-07 60.1 75 36.0
Medtr6g069010 Medicago truncatula HOM05D008057 ORTHO05D003476 5.5e-07 60.1 164 30.5
Oeu046660.1 Olea europaea HOM05D006793 ORTHO05D003476 5.5e-07 60.1 332 24.1
Cfa017812 Carpinus fangiana HOM05D008057 ORTHO05D003476 7.1e-07 59.7 79 34.2
Peaxi162Scf00171g00028 Petunia axillaris HOM05D008057 ORTHO05D003476 7.1e-07 59.7 73 41.1
Lalb_Chr14g0370111 Lupinus albus HOM05D008057 ORTHO05D003476 9.3e-07 59.3 66 42.4
CsaV3_1G033920 Cucumis sativus L. HOM05D008057 ORTHO05D003476 1.6e-06 58.5 76 42.1
Hund06726 Selenicereus undatus HOM05D008057 ORTHO05D003476 1.6e-06 58.5 124 33.9
Gohir.D02G118700 Gossypium hirsutum HOM05D008057 ORTHO05D003476 2.1e-06 58.2 75 34.7
Atru.chr9.28 Acer truncatum HOM05D008057 ORTHO05D003476 2.7e-06 57.8 79 35.4
CiPaw.16G075800 Carya illinoinensis HOM05D008057 ORTHO05D003476 2.7e-06 57.8 82 32.9
Nitab4.5_0009307g0060 Nicotiana tabacum HOM05D008057 ORTHO05D003476 3.5e-06 57.4 243 23.0
Rhsim10G0138900 Rhododendron simsii HOM05D008057 ORTHO05D003476 3.5e-06 57.4 67 38.8
ClCG03G001720 Citrullus lanatus HOM05D008057 ORTHO05D003476 4.6e-06 57.0 76 39.5
Ciclev10020800m.g Citrus clementina HOM05D008057 ORTHO05D003476 4.6e-06 57.0 141 28.4
Sp6g19870 Schrenkiella parvula HOM05D012436 ORTHO05D003476 4.6e-06 57.0 72 40.3
Gorai.005G135100 Gossypium raimondii HOM05D008057 ORTHO05D003476 6.0e-06 56.6 75 33.3
Lj2g0026608 Lotus japonicus HOM05D008057 ORTHO05D003476 6.0e-06 56.6 80 33.8
Potri.018G151900 Populus trichocarpa HOM05D008057 ORTHO05D003476 6.0e-06 56.6 85 29.4
CARHR272010 Cardamine hirsuta HOM05D012436 ORTHO05D003476 7.9e-06 56.2 103 34.0
GSVIVG01024238001 Vitis vinifera HOM05D008057 ORTHO05D003476 7.9e-06 56.2 57 45.6


User provided reference genes

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