Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN01G0209 Fragaria x ananassa HOM05D004930 ORTHO05D006531 1.9e-56 222.2 108 100.0
FAN17G1951 Fragaria x ananassa HOM05D004930 ORTHO05D006531 9.3e-56 219.9 108 99.1
FAN17G1425 Fragaria x ananassa HOM05D004930 ORTHO05D006531 4.8e-52 207.6 118 89.0
FAN17G0369 Fragaria x ananassa HOM05D004930 ORTHO05D011275 1.1e-45 186.4 94 94.7
FAN12G1704 Fragaria x ananassa HOM05D004930 ORTHO05D006531 4.0e-43 177.9 104 84.6
FvH4_4g16550 Fragaria vesca HOM05D004930 ORTHO05D011275 2.6e-34 148.7 75 93.3
FAN25G1134 Fragaria x ananassa HOM05D004930 ORTHO05D006531 3.8e-33 144.8 133 58.6
FAN06G5097 Fragaria x ananassa HOM05D004930 ORTHO05D006531 1.1e-32 143.3 133 57.9
FAN11G3733 Fragaria x ananassa HOM05D004930 ORTHO05D006531 3.2e-32 141.7 79 84.8
FAN04G2298 Fragaria x ananassa HOM05D004930 ORTHO05D006531 4.2e-32 141.4 74 91.9
FAN13G1313 Fragaria x ananassa HOM05D004930 ORTHO05D006531 4.2e-32 141.4 74 91.9
FvH4_5g29680 Fragaria vesca HOM05D004930 ORTHO05D006531 1.2e-31 139.8 74 90.5
FAN18G2930 Fragaria x ananassa HOM05D004930 ORTHO05D006531 1.2e-31 139.8 74 90.5
RcHm_v2.0_Chr7g0223001 Rosa chinensis HOM05D004930 ORTHO05D006531 5.1e-30 134.4 74 86.5
FvH4_3g12743 Fragaria vesca HOM05D004930 ORTHO05D006531 7.4e-29 130.6 75 84.0
FvH4_3g29702 Fragaria vesca HOM05D004930 ORTHO05D011275 9.7e-29 130.2 71 87.3
Prupe.1G566300 Prunus persica HOM05D004930 ORTHO05D006531 1.4e-27 126.3 75 81.3
MD15G1421100 Malus domestica HOM05D004930 ORTHO05D006531 2.4e-27 125.6 74 77.0
Sed0026856 Sechium edule HOM05D004930 ORTHO05D006531 8.5e-25 117.1 65 83.1
Cpa.g.sc2.5 Carica papaya HOM05D004930 ORTHO05D006531 1.4e-24 116.3 68 73.5
Duzib052G0674 Durio zibethinus HOM05D004930 ORTHO05D006531 7.2e-24 114.0 66 78.8
CiPaw.06G148500 Carya illinoinensis HOM05D004930 ORTHO05D006531 1.2e-23 113.2 66 78.8
arahy.Tifrunner.gnm1.ann1.3M9FW6 Arachis hypogaea HOM05D004930 ORTHO05D006531 2.1e-23 112.5 65 78.5
arahy.Tifrunner.gnm1.ann1.PLNC5S Arachis hypogaea HOM05D004930 ORTHO05D006531 2.1e-23 112.5 65 78.5
COL.COLO4_17882 Corchorus olitorius HOM05D004930 ORTHO05D006531 2.7e-23 112.1 64 79.7
Manes.07G014400 Manihot esculenta HOM05D004930 ORTHO05D006531 2.7e-23 112.1 65 80.0
ClCG05G009760 Citrullus lanatus HOM05D004930 ORTHO05D006531 3.6e-23 111.7 77 72.7
QL02p098488 Quercus lobata HOM05D004930 ORTHO05D006531 3.6e-23 111.7 66 78.8
Gohir.A01G001000 Gossypium hirsutum HOM05D004930 ORTHO05D006531 4.7e-23 111.3 70 72.9
Gohir.D01G000700 Gossypium hirsutum HOM05D004930 ORTHO05D006531 4.7e-23 111.3 70 72.9
Gorai.002G001200 Gossypium raimondii HOM05D004930 ORTHO05D006531 4.7e-23 111.3 70 72.9
Psat1g224280 Pisum sativum HOM05D004930 ORTHO05D006531 4.7e-23 111.3 66 77.3
PGR042G0956 Punica granatum HOM05D004930 ORTHO05D006531 4.7e-23 111.3 66 78.8
Thecc.02G040000 Theobroma cacao HOM05D004930 ORTHO05D006531 4.7e-23 111.3 64 79.7
Haze_01635 Corylus avellana HOM05D004930 ORTHO05D006531 6.1e-23 110.9 74 71.6
Duzib248G0906 Durio zibethinus HOM05D004930 ORTHO05D006531 6.1e-23 110.9 64 78.1
Cfa005536 Carpinus fangiana HOM05D004930 ORTHO05D006531 1.4e-22 109.8 74 70.3
Ciclev10001315m.g Citrus clementina HOM05D004930 ORTHO05D006531 1.4e-22 109.8 70 72.9
TPR.G2103 Trifolium pratense HOM05D004930 ORTHO05D006531 1.4e-22 109.8 80 67.5
Ca_00086_v3 Cicer arietinum L. HOM05D004930 ORTHO05D006531 1.8e-22 109.4 80 66.2
Lj6g0009653 Lotus japonicus HOM05D004930 ORTHO05D006531 1.8e-22 109.4 67 74.6
CANSAT11G0917 Cannabis sativa HOM05D004930 ORTHO05D006531 3.0e-22 108.6 77 68.8
CsaV3_3G018910 Cucumis sativus L. HOM05D004930 ORTHO05D006531 3.0e-22 108.6 78 69.2
Thhalv10007991m.g Eutrema salsugineum HOM05D004930 ORTHO05D006531 3.9e-22 108.2 64 78.1
Atru.chr6.830 Acer truncatum HOM05D004930 ORTHO05D006531 5.1e-22 107.8 70 71.4
MELO3C019485.2 Cucumis melo HOM05D004930 ORTHO05D006531 6.7e-22 107.5 65 73.8
Sp1g28730 Schrenkiella parvula HOM05D004930 ORTHO05D006531 1.1e-21 106.7 64 75.0
THA.LOC104810264 Tarenaya hassleriana HOM05D004930 ORTHO05D006531 1.1e-21 106.7 64 75.0
A08p08610 Brassica napus HOM05D004930 ORTHO05D006531 1.5e-21 106.3 64 76.6
BraA08t32874Z Brassica rapa HOM05D004930 ORTHO05D006531 1.5e-21 106.3 64 76.6
CARHR032640 Cardamine hirsuta HOM05D004930 ORTHO05D006531 1.5e-21 106.3 64 75.0
Lalb_Chr18g0060861 Lupinus albus HOM05D004930 ORTHO05D006531 2.0e-21 105.9 66 75.8
Sabra01G0161800 Salix brachista HOM05D004930 ORTHO05D006531 2.6e-21 105.5 65 72.3
TWI59G0754 Tripterygium wilfordii HOM05D004930 ORTHO05D006531 2.6e-21 105.5 64 75.0
AT1G33270 Arabidopsis thaliana HOM05D004930 ORTHO05D006531 3.3e-21 105.1 64 75.0
BcaB04g17919 Brassica carinata HOM05D004930 ORTHO05D006531 3.3e-21 105.1 64 73.4
BcaC07g37556 Brassica carinata HOM05D004930 ORTHO05D006531 3.3e-21 105.1 64 75.0
BolC8t47898H Brassica oleracea HOM05D004930 ORTHO05D006531 3.3e-21 105.1 64 75.0
AL1G47670 Arabidopsis lyrata HOM05D004930 ORTHO05D006531 4.4e-21 104.8 64 73.4
Carub.0001s3147 Capsella rubella HOM05D004930 ORTHO05D006531 4.4e-21 104.8 64 73.4
Glyma.15G047800 Glycine max HOM05D004930 ORTHO05D006531 4.4e-21 104.8 68 73.5
Medtr2g007650 Medicago truncatula HOM05D004930 ORTHO05D006531 5.7e-21 104.4 64 73.4
Aa31LG6G7800 Aethionema arabicum HOM05D004930 ORTHO05D006531 7.4e-21 104.0 65 69.2
VMungo0540G0757 Vigna mungo HOM05D004930 ORTHO05D006531 7.4e-21 104.0 73 69.9
Gohir.A08G000149 Gossypium hirsutum HOM05D004930 ORTHO05D006531 1.7e-20 102.8 70 67.1
Potri.001G209500 Populus trichocarpa HOM05D004930 ORTHO05D006531 2.2e-20 102.4 65 69.2
Phvul.006G213000 Phaseolus vulgaris HOM05D004930 ORTHO05D006531 2.8e-20 102.1 74 68.9
Gohir.D08G010200 Gossypium hirsutum HOM05D004930 ORTHO05D006531 3.7e-20 101.7 72 63.9
Gorai.004G003500 Gossypium raimondii HOM05D004930 ORTHO05D006531 3.7e-20 101.7 72 63.9
Sabra03G0012100 Salix brachista HOM05D004930 ORTHO05D006531 3.7e-20 101.7 65 70.8
Potri.003G020800 Populus trichocarpa HOM05D004930 ORTHO05D006531 1.1e-19 100.1 65 70.8
AUR62003500 Chenopodium quinoa HOM05D004930 ORTHO05D006531 1.8e-19 99.4 67 67.2
SGA_v2.0_scaffold145G36067 Striga asiatica HOM05D004930 ORTHO05D006531 1.8e-19 99.4 64 70.3
Nn1g08650 Nelumbo nucifera HOM05D004930 ORTHO05D006531 3.1e-19 98.6 63 69.8
Dinv19356 Davidia involucrata HOM05D004930 ORTHO05D006531 5.3e-19 97.8 64 67.2
Migut.N01037 Erythranthe guttata HOM05D004930 ORTHO05D006531 5.3e-19 97.8 65 67.7
Ah.03g147430 Amaranthus hybridus HOM05D004930 ORTHO05D006531 9.1e-19 97.1 75 64.0
Glyma.08G184900 Glycine max HOM05D004930 ORTHO05D006531 9.1e-19 97.1 76 67.1
THA.LOC104813074 Tarenaya hassleriana HOM05D004930 ORTHO05D006531 9.1e-19 97.1 64 67.2
EL10Ac6g15372 Beta vulgaris HOM05D004930 ORTHO05D006531 1.2e-18 96.7 69 66.7
CSS0021494 Camellia sinensis var. sinensis HOM05D004930 ORTHO05D006531 1.5e-18 96.3 64 68.8
TAR628G0980 Trochodendron aralioides HOM05D004930 ORTHO05D006531 1.5e-18 96.3 74 59.5
BcaC08g43878 Brassica carinata HOM05D004930 ORTHO05D006531 3.4e-18 95.1 64 71.9
BolC6t36417H Brassica oleracea HOM05D004930 ORTHO05D006531 3.4e-18 95.1 64 71.9
Hund04330 Selenicereus undatus HOM05D004930 ORTHO05D006531 4.5e-18 94.7 67 62.7
SEGI_13232 Sequoiadendron giganteum HOM05D004930 ORTHO05D006531 5.9e-18 94.4 64 67.2
Eucgr.G00613 Eucalyptus grandis HOM05D004930 ORTHO05D006531 7.7e-18 94.0 62 66.1
C06p12670 Brassica napus HOM05D004930 ORTHO05D006531 1.0e-17 93.6 64 70.3
Rhsim05G0119100 Rhododendron simsii HOM05D004930 ORTHO05D006531 1.0e-17 93.6 59 69.5
TAR376G0678 Trochodendron aralioides HOM05D004930 ORTHO05D006531 1.0e-17 93.6 74 60.8
BcaB07g32965 Brassica carinata HOM05D004930 ORTHO05D006531 1.7e-17 92.8 64 70.3
A09p32980 Brassica napus HOM05D004930 ORTHO05D006531 1.7e-17 92.8 64 70.3
BraA09t38838Z Brassica rapa HOM05D004930 ORTHO05D006531 1.7e-17 92.8 64 70.3
SalBow6G0918 Salvia bowleyana HOM05D004930 ORTHO05D006531 1.7e-17 92.8 64 65.6
SalBow6G1869 Salvia bowleyana HOM05D004930 ORTHO05D006531 1.7e-17 92.8 64 65.6
AUR62017811 Chenopodium quinoa HOM05D004930 ORTHO05D006531 2.2e-17 92.4 61 68.9
DCAR_001819 Daucus carota HOM05D004930 ORTHO05D006531 3.8e-17 91.7 71 62.0
Nitab4.5_0011195g0040 Nicotiana tabacum HOM05D004930 ORTHO05D006531 3.8e-17 91.7 67 64.2
vmacro19901 Vaccinium macrocarpon HOM05D004930 ORTHO05D006531 3.8e-17 91.7 59 66.1
CAN.G1577.7 Capsicum annuum HOM05D004930 ORTHO05D006531 5.0e-17 91.3 64 65.6
Nitab4.5_0002245g0180 Nicotiana tabacum HOM05D004930 ORTHO05D006531 5.0e-17 91.3 64 65.6
Lj5A251T70 Lonicera japonica HOM05D004930 ORTHO05D006531 1.9e-16 89.4 62 62.9
Cc02_g22360 Coffea canephora HOM05D004930 ORTHO05D006531 2.5e-16 89.0 62 67.7
Solyc01g104310.3 Solanum lycopersicum HOM05D004930 ORTHO05D006531 2.5e-16 89.0 64 64.1
PGSC0003DMG400023754 Solanum tuberosum HOM05D004930 ORTHO05D006531 2.5e-16 89.0 64 64.1
CDE05G0822 Ceratophyllum demersum HOM05D004930 ORTHO05D006531 4.2e-16 88.2 62 61.3
SMO145G0200 Selaginella moellendorffii HOM05D004930 ORTHO05D006531 4.2e-16 88.2 72 54.2
CSS0024235 Camellia sinensis var. sinensis HOM05D004930 ORTHO05D006531 5.5e-16 87.8 59 67.8
Sopen01g046750 Solanum pennellii HOM05D004930 ORTHO05D006531 5.5e-16 87.8 64 62.5
Lsat_1_v5_gn_7_77761 Lactuca sativa HOM05D004930 ORTHO05D006531 9.4e-16 87.0 65 63.1
Lalb_Chr20g0123411 Lupinus albus HOM05D004930 ORTHO05D006531 9.4e-16 87.0 58 69.0
GSVIVG01022999001 Vitis vinifera HOM05D004930 ORTHO05D006531 2.1e-15 85.9 51 74.5
Sc07g0007240 Simmondsia chinensis HOM05D004930 ORTHO05D006531 2.7e-15 85.5 64 68.8
Actinidia39050 Actinidia chinensis HOM05D004930 ORTHO05D006531 6.1e-15 84.3 64 57.8
HanXRQChr11g0333531 Helianthus annuus HOM05D004930 ORTHO05D006531 1.4e-14 83.2 50 72.0
MBI03_g28294_MAGBIO Magnolia biondii HOM05D004930 ORTHO05D006531 1.4e-14 83.2 64 57.8
HPP92_002187 Vanilla planifolia HOM05D004930 ORTHO05D006531 2.3e-14 82.4 61 55.7
ECA236G4599 Erigeron canadensis HOM05D004930 ORTHO05D006531 3.9e-14 81.6 50 74.0
ATR0684G093 Amborella trichopoda HOM05D004930 ORTHO05D006531 8.8e-14 80.5 72 54.2
Zm00001eb113740 Zea mays HOM05D004930 ORTHO05D006531 1.1e-13 80.1 58 63.8
AagrBONN_evm.TU.Sc2ySwM_344.3941 Anthoceros agrestis HOM05D004930 ORTHO05D006531 1.5e-13 79.7 64 57.8
Os11g0546300 Oryza sativa ssp. japonica HOM05D004930 ORTHO05D006531 2.6e-13 79.0 58 62.1
Aqoxy5G02422 Aquilegia oxysepala HOM05D004930 ORTHO05D006531 2.8e-12 75.5 52 65.4
Pp3c11_20720 Physcomitrium patens HOM05D004930 ORTHO05D006531 1.1e-11 73.6 63 55.6
vmacro01769 Vaccinium macrocarpon HOM05D004930 ORTHO05D006531 2.4e-11 72.4 71 54.9
Mapoly0101s0012 Marchantia polymorpha HOM05D004930 ORTHO05D006531 5.3e-11 71.2 56 57.1
AagrBONN_evm.TU.Sc2ySwM_344.3947 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.6e-07 59.7 60 48.3
PSO170G4712 Papaver somniferum HOM05D004930 ORTHO05D006531 1.6e-07 59.7 53 52.8


User provided reference genes

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