Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN01G0152 Fragaria x ananassa HOM05D000007 ORTHO05D000017 1.1e-92 343.2 161 100.0
FAN03G2907 Fragaria x ananassa HOM05D000007 ORTHO05D000017 7.0e-84 313.9 158 94.9
FAN06G0403 Fragaria x ananassa HOM05D000007 ORTHO05D000017 1.5e-73 279.6 158 85.4
FAN06G0788 Fragaria x ananassa HOM05D000007 ORTHO05D000017 5.6e-73 277.7 158 84.8
FAN03G2258 Fragaria x ananassa HOM05D000007 ORTHO05D029656 5.3e-55 218.0 111 93.7
FvH4_7g29450 Fragaria vesca HOM05D000007 ORTHO05D029656 1.2e-43 180.3 109 81.7
RcHm_v2.0_Chr2g0107851 Rosa chinensis HOM05D000007 ORTHO05D000017 5.1e-26 121.7 143 46.9
RcHm_v2.0_Chr2g0107881 Rosa chinensis HOM05D000007 ORTHO05D000017 1.5e-25 120.2 141 46.1
RcHm_v2.0_Chr2g0107841 Rosa chinensis HOM05D000007 ORTHO05D000017 9.7e-25 117.5 158 42.4
FAN23G1980 Fragaria x ananassa HOM05D000007 ORTHO05D000017 1.8e-23 113.2 144 43.8
FAN26G2312 Fragaria x ananassa HOM05D000007 ORTHO05D000017 4.1e-23 112.1 143 43.4
FvH4_1g13750 Fragaria vesca HOM05D000007 ORTHO05D035254 9.1e-23 110.9 144 42.4
FAN19G0773 Fragaria x ananassa HOM05D000007 ORTHO05D035254 9.1e-23 110.9 144 42.4
FvH4_1g13770 Fragaria vesca HOM05D000007 ORTHO05D000017 3.4e-22 109.0 123 44.7
RcHm_v2.0_Chr2g0107821 Rosa chinensis HOM05D000007 ORTHO05D000017 1.3e-21 107.1 144 45.8
FvH4_1g13760 Fragaria vesca HOM05D000007 ORTHO05D035254 1.7e-21 106.7 145 42.1
FvH4_2g36710 Fragaria vesca HOM05D000007 ORTHO05D000017 2.9e-21 105.9 150 42.7
FvH4_2g36711 Fragaria vesca HOM05D000007 ORTHO05D000017 3.8e-21 105.5 150 42.7
FvH4_4g30361 Fragaria vesca HOM05D000007 ORTHO05D000017 6.5e-21 104.8 127 44.9
FAN12G1497 Fragaria x ananassa HOM05D000007 ORTHO05D000017 6.5e-21 104.8 127 44.9
FAN27G2044 Fragaria x ananassa HOM05D000007 ORTHO05D000017 1.1e-20 104.0 150 42.7
FAN15G1356 Fragaria x ananassa HOM05D000007 ORTHO05D000017 3.2e-20 102.4 150 42.0
FAN23G0995 Fragaria x ananassa HOM05D000007 ORTHO05D000017 7.2e-20 101.3 149 43.6
FvH4_1g17570 Fragaria vesca HOM05D000007 ORTHO05D000017 2.7e-19 99.4 150 38.7
FvH4_1g17560 Fragaria vesca HOM05D000007 ORTHO05D000017 4.7e-19 98.6 148 39.2
RcHm_v2.0_Chr2g0107801 Rosa chinensis HOM05D000007 ORTHO05D000017 4.7e-19 98.6 145 41.4
RcHm_v2.0_Chr2g0107781 Rosa chinensis HOM05D000007 ORTHO05D000017 7.9e-19 97.8 134 41.8
FvH4_3g14941 Fragaria vesca HOM05D000007 ORTHO05D000017 1.0e-18 97.4 141 43.3
RcHm_v2.0_Chr2g0107891 Rosa chinensis HOM05D000007 ORTHO05D000017 1.0e-18 97.4 148 40.5
FAN19G2319 Fragaria x ananassa HOM05D000007 ORTHO05D000017 1.4e-18 97.1 139 41.7
RcHm_v2.0_Chr2g0107811 Rosa chinensis HOM05D000007 ORTHO05D000017 1.4e-18 97.1 149 40.3
FvH4_1g17550 Fragaria vesca HOM05D000007 ORTHO05D000017 1.8e-18 96.7 145 41.4
FvH4_1g18391 Fragaria vesca HOM05D000007 ORTHO05D000017 5.1e-18 95.1 117 44.4
FvH4_1g18430 Fragaria vesca HOM05D000007 ORTHO05D000017 5.1e-18 95.1 117 43.6
FAN17G2535 Fragaria x ananassa HOM05D000007 ORTHO05D000017 5.1e-18 95.1 149 40.9
FAN20G2365 Fragaria x ananassa HOM05D000007 ORTHO05D000017 6.7e-18 94.7 134 41.0
FvH4_1g17540 Fragaria vesca HOM05D000007 ORTHO05D000017 1.5e-17 93.6 137 40.9
FAN16G1371 Fragaria x ananassa HOM05D000007 ORTHO05D000017 1.5e-17 93.6 151 41.7
FvH4_1g13850 Fragaria vesca HOM05D000007 ORTHO05D000017 4.4e-17 92.0 127 37.8
RcHm_v2.0_Chr7g0211081 Rosa chinensis HOM05D000007 ORTHO05D000017 5.7e-17 91.7 113 46.0
FvH4_2g36701 Fragaria vesca HOM05D000007 ORTHO05D000017 7.4e-17 91.3 134 42.5
FAN11G0467 Fragaria x ananassa HOM05D000007 ORTHO05D000017 7.4e-17 91.3 150 40.0
FvH4_3g14954 Fragaria vesca HOM05D000007 ORTHO05D000017 9.7e-17 90.9 141 39.7
FAN27G1786 Fragaria x ananassa HOM05D000007 ORTHO05D029656 1.3e-16 90.5 131 42.7
RcHm_v2.0_Chr3g0475411 Rosa chinensis HOM05D000007 ORTHO05D000017 1.7e-16 90.1 126 42.1
RcHm_v2.0_Chr5g0076141 Rosa chinensis HOM05D000007 ORTHO05D000017 2.2e-16 89.7 155 40.0
FvH4_3g14940 Fragaria vesca HOM05D000007 ORTHO05D000017 2.8e-16 89.4 146 39.0
Prupe.6G214900 Prunus persica HOM05D000007 ORTHO05D000017 4.8e-16 88.6 128 44.5
Prupe.6G214700 Prunus persica HOM05D000007 ORTHO05D000017 6.3e-16 88.2 134 40.3
RcHm_v2.0_Chr1g0378141 Rosa chinensis HOM05D000007 ORTHO05D000017 6.3e-16 88.2 135 40.7
FAN16G2932 Fragaria x ananassa HOM05D000007 ORTHO05D000017 8.2e-16 87.8 141 39.0
RcHm_v2.0_Chr5g0059551 Rosa chinensis HOM05D000007 ORTHO05D000017 1.1e-15 87.4 123 42.3
FAN23G2354 Fragaria x ananassa HOM05D000007 ORTHO05D029656 1.4e-15 87.0 139 41.0
FAN25G0061 Fragaria x ananassa HOM05D000007 ORTHO05D000017 3.1e-15 85.9 141 37.6
FAN11G2942 Fragaria x ananassa HOM05D000007 ORTHO05D000017 4.1e-15 85.5 157 36.9
FvH4_3g14950 Fragaria vesca HOM05D000007 ORTHO05D000017 5.3e-15 85.1 157 36.3
FvH4_1g09021 Fragaria vesca HOM05D000007 ORTHO05D000017 6.9e-15 84.7 158 36.7
FvH4_1g13860 Fragaria vesca HOM05D000007 ORTHO05D000017 6.9e-15 84.7 126 36.5
FAN16G3676 Fragaria x ananassa HOM05D000007 ORTHO05D000017 9.1e-15 84.3 141 36.9
FAN26G1843 Fragaria x ananassa HOM05D000001 ORTHO05D009432 9.1e-15 84.3 155 34.2
FAN19G2933 Fragaria x ananassa HOM05D000007 ORTHO05D000017 1.2e-14 84.0 158 36.1
FAN09G3188 Fragaria x ananassa HOM05D000007 ORTHO05D000017 2.0e-14 83.2 120 44.2
RcHm_v2.0_Chr5g0076101 Rosa chinensis HOM05D000007 ORTHO05D000017 3.4e-14 82.4 154 39.6
FvH4_6g14981 Fragaria vesca HOM05D000007 ORTHO05D000017 4.5e-14 82.0 120 44.2
FAN14G2654 Fragaria x ananassa HOM05D000007 ORTHO05D000017 4.5e-14 82.0 120 44.2
FvH4_1g13820 Fragaria vesca HOM05D005839 ORTHO05D005686 5.9e-14 81.6 147 33.3
FAN11G3461 Fragaria x ananassa HOM05D001622 ORTHO05D002989 5.9e-14 81.6 151 36.4
Prupe.7G008100 Prunus persica HOM05D000007 ORTHO05D000017 1.0e-13 80.9 109 41.3
FAN15G2505 Fragaria x ananassa HOM05D000007 ORTHO05D000017 1.3e-13 80.5 151 35.1
FvH4_6g14972 Fragaria vesca HOM05D000007 ORTHO05D000017 2.9e-13 79.3 148 35.8
RcHm_v2.0_Chr5g0024531 Rosa chinensis HOM05D000007 ORTHO05D000017 5.0e-13 78.6 121 42.1
FvH4_3g32350 Fragaria vesca HOM05D000007 ORTHO05D000017 6.5e-13 78.2 114 40.4
RcHm_v2.0_Chr5g0059211 Rosa chinensis HOM05D000007 ORTHO05D000017 8.5e-13 77.8 151 36.4
RcHm_v2.0_Chr5g0059291 Rosa chinensis HOM05D000007 ORTHO05D000017 8.5e-13 77.8 133 36.8
FAN25G2493 Fragaria x ananassa HOM05D000007 ORTHO05D000017 1.1e-12 77.4 141 36.9
FvH4_3g42450 Fragaria vesca HOM05D000007 ORTHO05D000017 1.4e-12 77.0 154 33.1
RcHm_v2.0_Chr2g0086061 Rosa chinensis HOM05D000007 ORTHO05D013322 2.5e-12 76.3 161 31.1
FvH4_1g18470 Fragaria vesca HOM05D000007 ORTHO05D000017 3.2e-12 75.9 158 33.5
FvH4_6g14980 Fragaria vesca HOM05D000007 ORTHO05D000017 3.2e-12 75.9 146 36.3
FvH4_3g14952 Fragaria vesca HOM05D000007 ORTHO05D000017 5.5e-12 75.1 114 41.2
FvH4_6g14900 Fragaria vesca HOM05D000007 ORTHO05D000017 7.2e-12 74.7 124 37.1
FAN14G3180 Fragaria x ananassa HOM05D000007 ORTHO05D000017 9.4e-12 74.3 148 35.1
RcHm_v2.0_Chr2g0109731 Rosa chinensis HOM05D000007 ORTHO05D000017 1.2e-11 73.9 140 37.1
FvH4_6g19961 Fragaria vesca HOM05D000007 ORTHO05D000017 1.6e-11 73.6 147 35.4
FvH4_3g15782 Fragaria vesca HOM05D000007 ORTHO05D000017 2.1e-11 73.2 146 32.9
RcHm_v2.0_Chr5g0053901 Rosa chinensis HOM05D000007 ORTHO05D000017 2.1e-11 73.2 127 39.4
RcHm_v2.0_Chr3g0468191 Rosa chinensis HOM05D000007 ORTHO05D000017 3.6e-11 72.4 143 34.3
FAN09G0908 Fragaria x ananassa HOM05D000082 ORTHO05D009107 6.1e-11 71.6 125 36.0
FAN19G2602 Fragaria x ananassa HOM05D000007 ORTHO05D000017 8.0e-11 71.2 123 38.2
FAN10G3975 Fragaria x ananassa HOM05D000007 ORTHO05D000017 1.0e-10 70.9 116 35.3
FAN10G2566 Fragaria x ananassa HOM05D000007 ORTHO05D000017 1.8e-10 70.1 116 35.3
FvH4_3g45110 Fragaria vesca HOM05D000007 ORTHO05D000017 2.3e-10 69.7 146 34.9
FAN25G0914 Fragaria x ananassa HOM05D000007 ORTHO05D000017 2.3e-10 69.7 145 33.8
FvH4_6g14991 Fragaria vesca HOM05D000007 ORTHO05D000017 6.7e-10 68.2 129 35.7
FAN03G1705 Fragaria x ananassa HOM05D000007 ORTHO05D000017 8.8e-10 67.8 163 30.1
FvH4_3g42470 Fragaria vesca HOM05D000007 ORTHO05D000017 2.0e-09 66.6 158 33.5
RcHm_v2.0_Chr5g0076131 Rosa chinensis HOM05D000007 ORTHO05D000017 3.3e-09 65.9 117 38.5
RcHm_v2.0_Chr5g0075691 Rosa chinensis HOM05D000007 ORTHO05D000017 4.4e-09 65.5 126 37.3
RcHm_v2.0_Chr2g0122651 Rosa chinensis HOM05D000007 ORTHO05D013322 5.7e-09 65.1 134 32.8
Prupe.2G278600 Prunus persica HOM05D000007 ORTHO05D000017 1.7e-08 63.5 128 33.6
FAN01G1469 Fragaria x ananassa HOM05D000007 ORTHO05D000017 2.8e-08 62.8 116 33.6
Gorai.004G021600 Gossypium raimondii HOM05D000007 ORTHO05D000017 2.8e-08 62.8 125 34.4
Prupe.2G278400 Prunus persica HOM05D000007 ORTHO05D000017 2.8e-08 62.8 126 34.9
FAN08G1027 Fragaria x ananassa HOM05D000007 ORTHO05D013322 3.7e-08 62.4 107 37.4
FvH4_2g33500 Fragaria vesca HOM05D000007 ORTHO05D000017 8.2e-08 61.2 137 32.8
FAN23G2883 Fragaria x ananassa HOM05D000007 ORTHO05D000017 8.2e-08 61.2 115 33.0
FAN24G1725 Fragaria x ananassa HOM05D000007 ORTHO05D046568 8.2e-08 61.2 137 32.8
FvH4_1g18480 Fragaria vesca HOM05D000007 ORTHO05D000017 1.4e-07 60.5 131 32.8
Gorai.004G021100 Gossypium raimondii HOM05D000007 ORTHO05D000017 1.4e-07 60.5 123 30.9
Gorai.004G021400 Gossypium raimondii HOM05D000007 ORTHO05D000017 1.4e-07 60.5 123 31.7
Gohir.D08G025811 Gossypium hirsutum HOM05D000007 ORTHO05D000017 1.8e-07 60.1 152 28.9
Gohir.D08G025833 Gossypium hirsutum HOM05D000007 ORTHO05D000017 1.8e-07 60.1 125 32.8
FAN15G3234 Fragaria x ananassa HOM05D000007 ORTHO05D000017 3.1e-07 59.3 103 42.7
Gohir.A08G015116 Gossypium hirsutum HOM05D000007 ORTHO05D000017 3.1e-07 59.3 122 31.1
Gohir.A08G015180 Gossypium hirsutum HOM05D000007 ORTHO05D000017 3.1e-07 59.3 123 30.9
RcHm_v2.0_Chr5g0030551 Rosa chinensis HOM05D000007 ORTHO05D000017 3.1e-07 59.3 119 29.4
Duzib168G0318 Durio zibethinus HOM05D000007 ORTHO05D000017 4.1e-07 58.9 127 34.6
Haze_09105 Corylus avellana HOM05D003895 ORTHO05D004723 5.3e-07 58.5 119 30.3
FAN26G1364 Fragaria x ananassa HOM05D000007 ORTHO05D000017 7.0e-07 58.2 122 36.1
Gohir.A08G015148 Gossypium hirsutum HOM05D000007 ORTHO05D000017 7.0e-07 58.2 152 28.9
BolC3t20695H Brassica oleracea HOM05D000007 ORTHO05D000017 1.2e-06 57.4 151 28.5
Gohir.D08G025844 Gossypium hirsutum HOM05D000007 ORTHO05D000017 1.2e-06 57.4 123 32.5
Gorai.004G021700 Gossypium raimondii HOM05D000007 ORTHO05D000017 1.2e-06 57.4 123 32.5
Gohir.A08G015500 Gossypium hirsutum HOM05D000007 ORTHO05D000017 2.0e-06 56.6 123 30.1
Gorai.004G022100 Gossypium raimondii HOM05D000007 ORTHO05D000017 2.0e-06 56.6 112 30.4
BcaC01g00777 Brassica carinata HOM05D000007 ORTHO05D000017 2.6e-06 56.2 151 28.5
Thhalv10025373m.g Eutrema salsugineum HOM05D000007 ORTHO05D000017 2.6e-06 56.2 151 28.5
Gohir.A08G015200 Gossypium hirsutum HOM05D000007 ORTHO05D000017 2.6e-06 56.2 123 32.5
Gohir.D03G060601 Gossypium hirsutum HOM05D000007 ORTHO05D000017 2.6e-06 56.2 126 31.0
Gorai.002G056300 Gossypium raimondii HOM05D000007 ORTHO05D000017 2.6e-06 56.2 126 31.0
C03p84160 Brassica napus HOM05D000007 ORTHO05D000017 5.9e-06 55.1 151 27.8
A08p15730 Brassica napus HOM05D000007 ORTHO05D000017 7.7e-06 54.7 142 28.9
BraA08t33552Z Brassica rapa HOM05D000007 ORTHO05D000017 7.7e-06 54.7 142 28.9
Gohir.D08G025888 Gossypium hirsutum HOM05D000007 ORTHO05D000017 7.7e-06 54.7 112 30.4


User provided reference genes

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