Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN01G0139 Fragaria x ananassa HOM05D005840 ORTHO05D007144 1.0e-151 540.0 269 100.0
FAN10G0422 Fragaria x ananassa HOM05D005840 ORTHO05D007144 1.7e-138 496.1 277 92.1
FAN10G3655 Fragaria x ananassa HOM05D005840 ORTHO05D007144 1.3e-135 486.5 277 91.3
FvH4_7g32940 Fragaria vesca HOM05D005840 ORTHO05D007144 1.8e-132 476.1 275 91.3
FAN03G2485 Fragaria x ananassa HOM05D005840 ORTHO05D007144 4.9e-130 468.0 269 91.4
RcHm_v2.0_Chr1g0382901 Rosa chinensis HOM05D005840 ORTHO05D007144 1.2e-120 436.8 294 80.6
Prupe.2G319100 Prunus persica HOM05D005840 ORTHO05D007144 4.3e-102 375.2 285 70.5
MD07G1299300 Malus domestica HOM05D005840 ORTHO05D007144 1.2e-96 357.1 278 70.1
MD01G1228500 Malus domestica HOM05D005840 ORTHO05D007144 1.5e-94 350.1 258 70.9
CANSAT21G1965 Cannabis sativa HOM05D005840 ORTHO05D007144 3.4e-91 339.0 277 65.0
Manes.01G043400 Manihot esculenta HOM05D005840 ORTHO05D007144 1.2e-88 330.5 285 62.1
QL09p007163 Quercus lobata HOM05D005840 ORTHO05D007144 1.6e-85 320.1 288 61.8
Dinv35383 Davidia involucrata HOM05D005840 ORTHO05D007144 4.5e-83 312.0 270 63.3
TAR375G0732 Trochodendron aralioides HOM05D005840 ORTHO05D007144 1.1e-81 307.4 290 61.0
Thecc.03G209000 Theobroma cacao HOM05D005840 ORTHO05D007144 1.4e-81 307.0 265 62.6
Solyc03g081220.1 Solanum lycopersicum HOM05D005840 ORTHO05D007144 4.2e-81 305.4 288 59.7
CSS0020402 Camellia sinensis var. sinensis HOM05D005840 ORTHO05D007144 7.1e-81 304.7 277 60.3
PGSC0003DMG400000562 Solanum tuberosum HOM05D005840 ORTHO05D007144 1.2e-80 303.9 286 59.4
Medtr3g092810 Medicago truncatula HOM05D005840 ORTHO05D007144 2.1e-80 303.1 296 57.8
Sopen03g021950 Solanum pennellii HOM05D005840 ORTHO05D007144 3.5e-80 302.4 288 59.0
Duzib084G0063 Durio zibethinus HOM05D005840 ORTHO05D007144 3.9e-79 298.9 248 65.3
Nitab4.5_0000319g0020 Nicotiana tabacum HOM05D005840 ORTHO05D007144 8.7e-79 297.7 283 59.7
Psat5g071840 Pisum sativum HOM05D005840 ORTHO05D007144 8.7e-79 297.7 297 57.6
Ca_16781_v3 Cicer arietinum L. HOM05D005840 ORTHO05D007144 1.1e-78 297.4 283 58.7
Lalb_Chr08g0239571 Lupinus albus HOM05D005840 ORTHO05D007144 5.7e-78 295.0 297 56.9
Nitab4.5_0010809g0010 Nicotiana tabacum HOM05D005840 ORTHO05D007144 7.4e-78 294.7 283 59.4
Ciclev10021557m.g Citrus clementina HOM05D005840 ORTHO05D007144 9.6e-78 294.3 274 61.3
Potri.015G002500 Populus trichocarpa HOM05D005840 ORTHO05D007144 9.6e-78 294.3 270 59.3
Cc02_g00800 Coffea canephora HOM05D005840 ORTHO05D007144 2.1e-77 293.1 289 59.5
Lsat_1_v5_gn_9_49980 Lactuca sativa HOM05D005840 ORTHO05D007144 2.1e-77 293.1 279 56.6
Oeu023690.1 Olea europaea HOM05D005840 ORTHO05D007144 1.1e-76 290.8 278 59.4
TPR.G33360 Trifolium pratense HOM05D005840 ORTHO05D007144 1.1e-76 290.8 298 55.4
Atru.chr12.2435 Acer truncatum HOM05D005840 ORTHO05D007144 1.8e-76 290.0 262 62.6
Nn3g18788 Nelumbo nucifera HOM05D005840 ORTHO05D007144 1.8e-76 290.0 272 59.2
Lalb_Chr23g0271941 Lupinus albus HOM05D005840 ORTHO05D007144 2.4e-76 289.7 276 59.8
TWI14G0550 Tripterygium wilfordii HOM05D005840 ORTHO05D007144 3.1e-76 289.3 259 61.0
PGR042G3207 Punica granatum HOM05D005840 ORTHO05D007144 6.9e-76 288.1 284 58.8
Cpa.g.sc3.150 Carica papaya HOM05D005840 ORTHO05D007144 9.0e-76 287.7 300 56.7
Sabra15G0001600 Salix brachista HOM05D005840 ORTHO05D007144 1.5e-75 287.0 259 60.6
Lj1g0001826 Lotus japonicus HOM05D005840 ORTHO05D007144 2.0e-75 286.6 295 55.6
VMungo1309G2416 Vigna mungo HOM05D005840 ORTHO05D007144 2.0e-75 286.6 295 57.6
Glyma.06G136800 Glycine max HOM05D005840 ORTHO05D007144 5.9e-75 285.0 294 57.8
Lsat_1_v5_gn_2_135020 Lactuca sativa HOM05D005840 ORTHO05D007144 7.6e-75 284.6 272 58.5
CAN.G303.23 Capsicum annuum HOM05D005840 ORTHO05D007144 1.3e-74 283.9 287 57.1
Haze_00300 Corylus avellana HOM05D005840 ORTHO05D007144 1.7e-74 283.5 215 69.3
Phvul.009G044800 Phaseolus vulgaris HOM05D005840 ORTHO05D007144 2.2e-74 283.1 296 56.8
AL6G36040 Arabidopsis lyrata HOM05D005840 ORTHO05D007144 1.4e-73 280.4 291 56.4
DCAR_008987 Daucus carota HOM05D005840 ORTHO05D007144 1.4e-73 280.4 285 54.4
Glyma.04G228100 Glycine max HOM05D005840 ORTHO05D007144 1.4e-73 280.4 300 55.3
ClCG01G000060 Citrullus lanatus HOM05D005840 ORTHO05D007144 1.9e-73 280.0 230 63.0
BolC9t53635H Brassica oleracea HOM05D005840 ORTHO05D007144 2.5e-73 279.6 288 55.9
Carub.0006s2229 Capsella rubella HOM05D005840 ORTHO05D007144 4.2e-73 278.9 286 57.0
CiPaw.06G041000 Carya illinoinensis HOM05D005840 ORTHO05D007144 5.5e-73 278.5 220 66.8
Gohir.D11G016500 Gossypium hirsutum HOM05D005840 ORTHO05D007144 5.5e-73 278.5 280 57.5
Thhalv10005309m.g Eutrema salsugineum HOM05D005840 ORTHO05D007144 7.2e-73 278.1 291 56.7
PSO063G5360 Papaver somniferum HOM05D005840 ORTHO05D007144 7.2e-73 278.1 286 57.3
Sc19g0000580 Simmondsia chinensis HOM05D005840 ORTHO05D007144 7.2e-73 278.1 267 57.7
Aa31LG11G3710 Aethionema arabicum HOM05D005840 ORTHO05D007144 1.2e-72 277.3 275 55.3
MELO3C005919.2 Cucumis melo HOM05D005840 ORTHO05D007144 1.2e-72 277.3 276 54.0
Gorai.004G125300 Gossypium raimondii HOM05D005840 ORTHO05D007144 1.6e-72 276.9 257 61.5
Gorai.007G017300 Gossypium raimondii HOM05D005840 ORTHO05D007144 1.6e-72 276.9 280 57.9
Sed0003210 Sechium edule HOM05D005840 ORTHO05D007144 3.6e-72 275.8 271 57.2
AT5G24460 Arabidopsis thaliana HOM05D005840 ORTHO05D007144 6.1e-72 275.0 297 54.2
THA.LOC104798983 Tarenaya hassleriana HOM05D005840 ORTHO05D007144 1.0e-71 274.2 289 55.7
MSTRG.26975 Avicennia marina HOM05D005840 ORTHO05D007144 1.3e-71 273.9 274 55.5
BcaC04g23543 Brassica carinata HOM05D005840 ORTHO05D007144 1.3e-71 273.9 291 54.3
C09p07230 Brassica napus HOM05D005840 ORTHO05D007144 1.3e-71 273.9 291 54.3
BraA09t36291Z Brassica rapa HOM05D005840 ORTHO05D007144 1.3e-71 273.9 293 54.6
Gohir.A08G104700 Gossypium hirsutum HOM05D005840 ORTHO05D007144 5.1e-71 271.9 257 60.3
Sp2g22870 Schrenkiella parvula HOM05D005840 ORTHO05D007144 5.1e-71 271.9 291 56.0
A09p06480 Brassica napus HOM05D005840 ORTHO05D007144 6.7e-71 271.6 293 54.3
Gohir.A11G016700 Gossypium hirsutum HOM05D005840 ORTHO05D007144 1.1e-70 270.8 273 58.2
CARHR188950 Cardamine hirsuta HOM05D005840 ORTHO05D007144 1.5e-70 270.4 294 55.4
BcaNung01236 Brassica carinata HOM05D005840 ORTHO05D007144 1.9e-70 270.0 296 54.1
MBI12_g45814_MAGBIO Magnolia biondii HOM05D005840 ORTHO05D007144 5.7e-70 268.5 266 56.4
Migut.F00150 Erythranthe guttata HOM05D005840 ORTHO05D007144 7.4e-70 268.1 285 55.1
Hma1.2p1_0094F.1_g047400 Hydrangea macrophylla HOM05D005840 ORTHO05D007144 7.4e-70 268.1 213 66.7
vmacro22785 Vaccinium macrocarpon HOM05D005840 ORTHO05D007144 7.4e-70 268.1 343 49.0
COL.COLO4_14373 Corchorus olitorius HOM05D005840 ORTHO05D007144 1.6e-69 266.9 210 65.7
SGA_v2.0_scaffold18G08468 Striga asiatica HOM05D005840 ORTHO05D007144 2.2e-69 266.5 282 55.3
Peaxi162Scf00912g10012 Petunia axillaris HOM05D005840 ORTHO05D007144 1.8e-68 263.5 203 66.5
SalBow6G2506 Salvia bowleyana HOM05D005840 ORTHO05D007144 2.4e-68 263.1 276 55.8
CsaV3_5G000100 Cucumis sativus L. HOM05D005840 ORTHO05D007144 5.3e-68 261.9 265 53.6
unitig_37.g11995 Utricularia gibba HOM05D005840 ORTHO05D007144 6.9e-68 261.5 292 52.1
HanXRQChr10g0305331 Helianthus annuus HOM05D005840 ORTHO05D007144 9.1e-68 261.2 279 55.6
A06p35290 Brassica napus HOM05D005840 ORTHO05D007144 3.4e-67 259.2 288 53.8
BraA06t26455Z Brassica rapa HOM05D005840 ORTHO05D007144 3.4e-67 259.2 300 52.3
Ah.13g070770 Amaranthus hybridus HOM05D005840 ORTHO05D007144 1.7e-66 256.9 306 50.0
Lj3P895T18 Lonicera japonica HOM05D005840 ORTHO05D007144 1.7e-66 256.9 205 63.4
Rhsim03G0215700 Rhododendron simsii HOM05D005840 ORTHO05D007144 1.7e-66 256.9 209 64.1
MSTRG.8611 Avicennia marina HOM05D005840 ORTHO05D007144 2.2e-66 256.5 297 51.9
Oeu055391.1 Olea europaea HOM05D005840 ORTHO05D007144 2.2e-66 256.5 214 63.6
Actinidia34271 Actinidia chinensis HOM05D005840 ORTHO05D007144 2.9e-66 256.1 194 67.5
PSO782G2283 Papaver somniferum HOM05D005840 ORTHO05D007144 3.8e-66 255.8 202 64.4
AUR62005991 Chenopodium quinoa HOM05D005840 ORTHO05D007144 6.5e-66 255.0 298 51.3
AUR62028079 Chenopodium quinoa HOM05D005840 ORTHO05D007144 1.1e-65 254.2 298 50.7
BcaB04g19821 Brassica carinata HOM05D005840 ORTHO05D007144 3.2e-65 252.7 208 64.4
C07p43220 Brassica napus HOM05D005840 ORTHO05D007144 3.2e-65 252.7 208 64.4
ECA232G4892 Erigeron canadensis HOM05D005840 ORTHO05D007144 5.5e-65 251.9 214 60.7
Aqoxy6G02459 Aquilegia oxysepala HOM05D005840 ORTHO05D007144 3.6e-64 249.2 228 59.6
Aqoxy6G02489 Aquilegia oxysepala HOM05D005840 ORTHO05D007144 3.6e-64 249.2 228 59.6
EL10Ac3g05171 Beta vulgaris HOM05D005840 ORTHO05D007144 2.8e-61 239.6 213 58.7
CDE04G1956 Ceratophyllum demersum HOM05D005840 ORTHO05D007144 1.1e-60 237.7 229 56.3
Sed0025728 Sechium edule HOM05D005840 ORTHO05D007144 4.1e-60 235.7 200 59.5
vmacro06444 Vaccinium macrocarpon HOM05D005840 ORTHO05D007144 5.3e-60 235.3 259 52.9
Cc11_g13290 Coffea canephora HOM05D005840 ORTHO05D007144 3.4e-59 232.6 230 60.0
CDE12G0905 Ceratophyllum demersum HOM05D005840 ORTHO05D007144 5.9e-59 231.9 236 54.7
Actinidia08699 Actinidia chinensis HOM05D005840 ORTHO05D007144 7.9e-56 221.5 200 59.0
unitig_92.g28240 Utricularia gibba HOM05D005840 ORTHO05D007144 1.4e-52 210.7 200 56.0
HPP92_022381 Vanilla planifolia HOM05D005840 ORTHO05D007144 3.5e-51 206.1 206 54.9
unitig_0.g2444 Utricularia gibba HOM05D005840 ORTHO05D007144 1.0e-50 204.5 197 53.8
SEGI_38224 Sequoiadendron giganteum HOM05D005840 ORTHO05D007144 1.2e-46 191.0 207 46.4
SHI02291 Sapria himalayana HOM05D005840 ORTHO05D007144 2.2e-45 186.8 207 50.7
ATR0661G235 Amborella trichopoda HOM05D005840 ORTHO05D007144 8.2e-45 184.9 199 51.3
BcaB04g19819 Brassica carinata HOM05D005840 ORTHO05D007144 1.6e-43 180.6 166 60.8
Zm00001eb272540 Zea mays HOM05D005840 ORTHO05D007144 3.0e-39 166.4 225 47.1
Mapoly0031s0111 Marchantia polymorpha HOM05D005840 ORTHO05D007144 2.8e-37 159.8 210 41.9
COL.COLO4_12096 Corchorus olitorius HOM05D005840 ORTHO05D007144 1.2e-35 154.5 171 52.0
Os06g0712200 Oryza sativa ssp. japonica HOM05D005840 ORTHO05D007144 2.7e-35 153.3 222 45.5
SMO140G0013 Selaginella moellendorffii HOM05D005840 ORTHO05D007144 1.7e-34 150.6 210 41.9
Pp3c3_29470 Physcomitrium patens HOM05D005840 ORTHO05D007144 2.3e-34 150.2 229 37.6
BcaNung02020 Brassica carinata HOM05D005840 ORTHO05D007144 2.9e-34 149.8 126 63.5
COL.COLO4_35601 Corchorus olitorius HOM05D005840 ORTHO05D007144 2.1e-32 143.7 206 41.3
CBR_g20004 Chara braunii HOM05D005840 ORTHO05D007144 1.0e-31 141.4 160 49.4
BcaB04g19822 Brassica carinata HOM05D005840 ORTHO05D007144 1.0e-23 114.8 119 54.6
Gohir.D08G116401 Gossypium hirsutum HOM05D005840 ORTHO05D007144 6.4e-21 105.5 110 56.4
SalBow4G0698 Salvia bowleyana HOM05D001856 ORTHO05D007144 5.9e-19 99.0 74 64.9
SalBow6G2140 Salvia bowleyana HOM05D005840 ORTHO05D007144 4.3e-17 92.8 50 80.0
Duzib114G0266 Durio zibethinus HOM05D005840 ORTHO05D007144 2.3e-15 87.0 144 38.2
MCO06G087 Micromonas commoda HOM05D005840 ORTHO05D007144 2.0e-14 84.0 206 32.0
Cre01.g012300 Chlamydomonas reinhardtii HOM05D005840 ORTHO05D007144 3.7e-13 79.7 137 39.4
COL.COLO4_35602 Corchorus olitorius HOM05D005840 ORTHO05D007144 8.3e-13 78.6 88 46.6
CAN.G2.4 Capsicum annuum HOM05D005840 ORTHO05D007144 1.4e-12 77.8 78 56.4
Potri.010G149800 Populus trichocarpa HOM05D005840 ORTHO05D007144 4.3e-09 66.2 78 47.4


User provided reference genes

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