Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN01G0043 Fragaria x ananassa HOM05D006111 ORTHO05D007683 3.1e-215 751.5 373 100.0
FAN10G2658 Fragaria x ananassa HOM05D006111 ORTHO05D007683 1.3e-213 746.1 373 99.2
FAN03G2464 Fragaria x ananassa HOM05D006111 ORTHO05D007683 2.9e-213 745.0 373 98.9
FvH4_7g01190 Fragaria vesca HOM05D006111 ORTHO05D007683 2.1e-211 738.8 373 99.2
FAN06G2641 Fragaria x ananassa HOM05D006111 ORTHO05D007683 2.1e-211 738.8 373 99.2
RcHm_v2.0_Chr1g0316521 Rosa chinensis HOM05D006111 ORTHO05D007683 7.3e-201 703.7 377 94.4
MD02G1308600 Malus domestica HOM05D006111 ORTHO05D007683 1.9e-180 636.0 382 84.6
MD07G1013000 Malus domestica HOM05D006111 ORTHO05D007683 2.1e-179 632.5 382 84.8
Prupe.2G015400 Prunus persica HOM05D006111 ORTHO05D007683 3.0e-178 628.6 383 84.9
Gorai.004G171600 Gossypium raimondii HOM05D006111 ORTHO05D007683 5.5e-172 607.8 379 78.1
Gohir.D08G164600 Gossypium hirsutum HOM05D006111 ORTHO05D007683 2.7e-171 605.5 379 77.8
Duzib268G0420 Durio zibethinus HOM05D006111 ORTHO05D007683 3.9e-170 601.7 380 78.9
Thecc.01G409400 Theobroma cacao HOM05D006111 ORTHO05D007683 1.9e-169 599.4 381 78.2
Dinv43431 Davidia involucrata HOM05D006111 ORTHO05D007683 2.1e-168 595.9 382 78.3
Manes.10G140800 Manihot esculenta HOM05D006111 ORTHO05D007683 8.2e-168 594.0 382 79.3
QL04p008312 Quercus lobata HOM05D006111 ORTHO05D007683 1.8e-167 592.8 385 79.0
Ciclev10031806m.g Citrus clementina HOM05D006111 ORTHO05D007683 6.9e-167 590.9 377 79.0
Lalb_Chr01g0015831 Lupinus albus HOM05D006111 ORTHO05D007683 6.9e-167 590.9 374 77.5
CSS0012829 Camellia sinensis var. sinensis HOM05D006111 ORTHO05D007683 9.0e-167 590.5 378 78.0
CSS0034733 Camellia sinensis var. sinensis HOM05D006111 ORTHO05D007683 9.0e-167 590.5 378 78.0
Eucgr.J01211 Eucalyptus grandis HOM05D006111 ORTHO05D007683 5.9e-166 587.8 386 78.2
Atru.chr11.2607 Acer truncatum HOM05D006111 ORTHO05D007683 5.0e-165 584.7 381 78.5
CiPaw.13G006200 Carya illinoinensis HOM05D006111 ORTHO05D007683 4.2e-164 581.6 379 77.8
TWI09G1338 Tripterygium wilfordii HOM05D006111 ORTHO05D007683 1.6e-163 579.7 379 76.3
PGR044G0412 Punica granatum HOM05D006111 ORTHO05D007683 1.0e-162 577.0 388 76.3
Potri.009G059600 Populus trichocarpa HOM05D006111 ORTHO05D007683 1.9e-161 572.8 386 75.4
EL10Ac2g04342 Beta vulgaris HOM05D006111 ORTHO05D007683 3.3e-161 572.0 387 74.2
CAN.G666.14 Capsicum annuum HOM05D006111 ORTHO05D007683 3.3e-161 572.0 379 76.5
SalBow6G4116 Salvia bowleyana HOM05D006111 ORTHO05D007683 3.3e-161 572.0 383 74.7
Aqoxy1G00288 Aquilegia oxysepala HOM05D006111 ORTHO05D007683 4.3e-161 571.6 390 74.1
TAR623G0061 Trochodendron aralioides HOM05D006111 ORTHO05D007683 5.7e-161 571.2 382 76.7
SalBow6G6970 Salvia bowleyana HOM05D006111 ORTHO05D007683 9.7e-161 570.5 383 74.4
Sc10g0000130 Simmondsia chinensis HOM05D006111 ORTHO05D007683 1.3e-160 570.1 385 74.8
ClCG09G004060 Citrullus lanatus HOM05D006111 ORTHO05D007683 2.8e-160 568.9 380 75.5
Nn7g36241 Nelumbo nucifera HOM05D006111 ORTHO05D007683 4.8e-160 568.2 389 75.3
MBI02_g05669_MAGBIO Magnolia biondii HOM05D006111 ORTHO05D007683 1.1e-159 567.0 388 73.5
Potri.009G059800 Populus trichocarpa HOM05D006111 ORTHO05D007683 1.1e-159 567.0 387 74.9
COL.COLO4_04864 Corchorus olitorius HOM05D006111 ORTHO05D007683 1.4e-159 566.6 380 75.5
CsaV3_7G030960 Cucumis sativus L. HOM05D006111 ORTHO05D007683 1.4e-159 566.6 380 75.3
MELO3C023560.2 Cucumis melo HOM05D006111 ORTHO05D007683 4.1e-159 565.1 396 73.2
THA.LOC104819080 Tarenaya hassleriana HOM05D006111 ORTHO05D007683 6.9e-159 564.3 385 73.8
Sed0027336 Sechium edule HOM05D006111 ORTHO05D007683 1.5e-158 563.1 380 75.3
Peaxi162Scf00818g00127 Petunia axillaris HOM05D006111 ORTHO05D007683 2.2e-157 559.3 395 73.2
Ah.10g038770 Amaranthus hybridus HOM05D006111 ORTHO05D007683 6.5e-157 557.8 389 72.8
Oeu014586.1 Olea europaea HOM05D006111 ORTHO05D007683 6.5e-157 557.8 382 74.9
Migut.N01606 Erythranthe guttata HOM05D006111 ORTHO05D007683 1.1e-156 557.0 383 74.2
arahy.Tifrunner.gnm1.ann1.M31XXH Arachis hypogaea HOM05D006111 ORTHO05D007683 2.5e-156 555.8 382 74.6
arahy.Tifrunner.gnm1.ann1.YZE6TL Arachis hypogaea HOM05D006111 ORTHO05D007683 2.5e-156 555.8 382 74.6
CANSAT80G0546 Cannabis sativa HOM05D006111 ORTHO05D007683 2.5e-156 555.8 386 73.3
MSTRG.17026 Avicennia marina HOM05D006111 ORTHO05D007683 7.2e-156 554.3 389 71.5
vmacro21191 Vaccinium macrocarpon HOM05D006111 ORTHO05D007683 9.4e-156 553.9 457 65.4
PSO339G0604 Papaver somniferum HOM05D006111 ORTHO05D007683 1.2e-155 553.5 390 73.1
CARHR082760 Cardamine hirsuta HOM05D006111 ORTHO05D007683 1.6e-155 553.1 376 73.9
AL3G19390 Arabidopsis lyrata HOM05D006111 ORTHO05D007683 2.7e-155 552.4 376 72.9
AT3G08010 Arabidopsis thaliana HOM05D006111 ORTHO05D007683 6.1e-155 551.2 376 72.9
PSO384G4428 Papaver somniferum HOM05D006111 ORTHO05D007683 1.8e-154 549.7 390 72.8
C03p43240 Brassica napus HOM05D006111 ORTHO05D007683 3.0e-154 548.9 375 73.1
HanXRQChr09g0260521 Helianthus annuus HOM05D006111 ORTHO05D007683 5.1e-154 548.1 378 74.1
Thhalv10020943m.g Eutrema salsugineum HOM05D006111 ORTHO05D007683 6.7e-154 547.7 381 73.2
Carub.0003s0759 Capsella rubella HOM05D006111 ORTHO05D007683 8.8e-154 547.4 376 72.1
DCAR_015173 Daucus carota HOM05D006111 ORTHO05D007683 8.8e-154 547.4 378 73.0
Sp3g06920 Schrenkiella parvula HOM05D006111 ORTHO05D007683 8.8e-154 547.4 381 72.7
Lsat_1_v5_gn_4_136121 Lactuca sativa HOM05D006111 ORTHO05D007683 2.0e-153 546.2 379 73.9
GSVIVG01032129001 Vitis vinifera HOM05D006111 ORTHO05D007683 2.6e-153 545.8 299 87.0
Sopen02g001570 Solanum pennellii HOM05D006111 ORTHO05D007683 4.4e-153 545.0 362 74.9
SGA_v2.0_scaffold24G10670 Striga asiatica HOM05D006111 ORTHO05D007683 4.4e-153 545.0 387 71.6
Hund21484 Selenicereus undatus HOM05D006111 ORTHO05D007683 1.3e-152 543.5 389 70.4
Solyc02g005200.4 Solanum lycopersicum HOM05D006111 ORTHO05D007683 2.2e-152 542.7 363 74.4
Nitab4.5_0001001g0030 Nicotiana tabacum HOM05D006111 ORTHO05D007683 4.8e-152 541.6 377 72.7
Lj3g0026579 Lotus japonicus HOM05D006111 ORTHO05D007683 1.8e-151 539.7 383 70.2
PGSC0003DMG400006635 Solanum tuberosum HOM05D006111 ORTHO05D007683 1.2e-150 537.0 370 73.2
Cc01_g06700 Coffea canephora HOM05D006111 ORTHO05D007683 2.2e-149 532.7 390 69.2
Cfa010790 Carpinus fangiana HOM05D006111 ORTHO05D007683 1.1e-148 530.4 379 72.8
Sabra09G0044000 Salix brachista HOM05D006111 ORTHO05D007683 1.4e-148 530.0 431 66.4
Aa31LG5G18560 Aethionema arabicum HOM05D006111 ORTHO05D007683 2.1e-147 526.2 378 70.1
Ca_14461_v3 Cicer arietinum L. HOM05D006111 ORTHO05D007683 3.7e-144 515.4 376 68.4
Glyma.10G089700 Glycine max HOM05D006111 ORTHO05D007683 8.2e-144 514.2 384 68.2
Glyma.15G275900 Glycine max HOM05D006111 ORTHO05D007683 8.2e-144 514.2 385 68.8
Rhsim01G0128600 Rhododendron simsii HOM05D006111 ORTHO05D007683 1.1e-143 513.8 492 59.1
ATR0332G055 Amborella trichopoda HOM05D006111 ORTHO05D007683 1.6e-142 510.0 373 68.1
Cpa.g.sc125.25 Carica papaya HOM05D006111 ORTHO05D007683 4.5e-142 508.4 427 63.0
Phvul.005G024500 Phaseolus vulgaris HOM05D006111 ORTHO05D007683 1.3e-141 506.9 374 68.2
VMungo1080G1123 Vigna mungo HOM05D006111 ORTHO05D007683 4.2e-140 501.9 375 68.0
Medtr3g030950 Medicago truncatula HOM05D006111 ORTHO05D007683 7.2e-140 501.1 384 67.2
Lj5C169G9 Lonicera japonica HOM05D006111 ORTHO05D007683 1.6e-139 500.0 283 83.7
AUR62043480 Chenopodium quinoa HOM05D006111 ORTHO05D007683 2.1e-139 499.6 388 66.5
unitig_749.g14328 Utricularia gibba HOM05D006111 ORTHO05D007683 1.4e-138 496.9 330 71.8
Nitab4.5_0000139g0200 Nicotiana tabacum HOM05D006111 ORTHO05D007683 3.3e-137 492.3 379 67.5
HPP92_009763 Vanilla planifolia HOM05D006111 ORTHO05D007683 7.0e-135 484.6 386 65.3
AUR62009394 Chenopodium quinoa HOM05D006111 ORTHO05D007683 1.7e-133 479.9 388 64.2
Psat5g208360 Pisum sativum HOM05D006111 ORTHO05D007683 3.8e-133 478.8 395 64.6
ECA232G4758 Erigeron canadensis HOM05D003880 ORTHO05D004959 5.0e-133 478.4 286 81.1
AUR62023076 Chenopodium quinoa HOM05D006111 ORTHO05D007683 1.9e-132 476.5 388 63.7
Os02g0610800 Oryza sativa ssp. japonica HOM05D006111 ORTHO05D007683 1.1e-127 460.7 306 70.3
Psat3g069160 Pisum sativum HOM05D006111 ORTHO05D007683 2.4e-127 459.5 296 74.0
CDE05G1285 Ceratophyllum demersum HOM05D006111 ORTHO05D007683 2.1e-123 446.4 367 63.2
Actinidia21546 Actinidia chinensis HOM05D006111 ORTHO05D007683 1.8e-119 433.3 378 63.2
Haze_03183 Corylus avellana HOM05D006111 ORTHO05D007683 8.0e-115 417.9 322 69.9
BcaB03g11554 Brassica carinata HOM05D006111 ORTHO05D007683 1.2e-105 387.5 227 79.7
Pp3c6_22710 Physcomitrium patens HOM05D006111 ORTHO05D007683 1.5e-105 387.1 332 56.6
Pp3c5_6760 Physcomitrium patens HOM05D006111 ORTHO05D007683 1.3e-104 384.0 293 60.8
Mapoly0153s0005 Marchantia polymorpha HOM05D006111 ORTHO05D007683 6.4e-104 381.7 325 56.3
Gohir.A08G143600 Gossypium hirsutum HOM05D006111 ORTHO05D007683 5.4e-103 378.6 246 75.2
A03p35610 Brassica napus HOM05D006111 ORTHO05D007683 5.6e-100 368.6 213 80.8
BolC3t16593H Brassica oleracea HOM05D006111 ORTHO05D007683 5.6e-100 368.6 213 80.8
BraA03t12736Z Brassica rapa HOM05D006111 ORTHO05D007683 5.6e-100 368.6 213 80.8
AagrBONN_evm.TU.Sc2ySwM_344.1799 Anthoceros agrestis HOM05D006111 ORTHO05D007683 1.8e-98 363.6 293 57.0
Zm00001eb246820 Zea mays HOM05D006111 ORTHO05D007683 9.2e-95 351.3 240 67.9
Medtr3g030975 Medicago truncatula HOM05D006111 ORTHO05D007683 4.3e-92 342.4 213 77.0
Actinidia20661 Actinidia chinensis HOM05D006111 ORTHO05D007683 1.6e-86 323.9 291 60.5
SMO353G0296 Selaginella moellendorffii HOM05D006111 ORTHO05D007683 6.6e-85 318.5 290 52.4
PRCOL_00003534 Prasinoderma coloniale HOM05D006111 ORTHO05D007683 4.3e-76 289.3 304 45.4
TPR.G35304 Trifolium pratense HOM05D006111 ORTHO05D007683 8.1e-75 285.0 230 63.5
Cre17.g702500 Chlamydomonas reinhardtii HOM05D006111 ORTHO05D007683 4.0e-74 282.7 345 43.5
HPP92_009753 Vanilla planifolia HOM05D006111 ORTHO05D007683 3.4e-73 279.6 177 75.7
Prupe.2G016000 Prunus persica HOM05D006111 ORTHO05D007683 9.9e-73 278.1 158 88.6
MCO10G268 Micromonas commoda HOM05D006111 ORTHO05D007683 1.7e-72 277.3 278 47.8
QL04p008446 Quercus lobata HOM05D006111 ORTHO05D007683 7.6e-57 225.3 135 80.0
A03p35600 Brassica napus HOM05D006111 ORTHO05D007683 7.2e-47 192.2 162 65.4
CBR_g5582 Chara braunii HOM05D006111 ORTHO05D007683 4.3e-44 183.0 161 54.0
SEGI_32608 Sequoiadendron giganteum HOM05D006111 ORTHO05D007683 9.4e-39 165.2 108 69.4
HanXRQChr12g0362881 Helianthus annuus HOM05D006111 ORTHO05D007683 2.2e-35 154.1 108 68.5
CBR_g5588 Chara braunii HOM05D006111 ORTHO05D007683 2.9e-32 143.7 97 67.0
HPP92_009752 Vanilla planifolia HOM05D006111 ORTHO05D007683 1.2e-30 138.3 171 49.1
SEGI_00353 Sequoiadendron giganteum HOM05D006111 ORTHO05D007683 1.8e-26 124.4 87 66.7
Medtr8g104810 Medicago truncatula HOM05D006111 ORTHO05D007683 4.0e-21 106.7 64 73.4
C03p43260 Brassica napus HOM05D006111 ORTHO05D007683 2.2e-16 90.9 48 85.4
BolC3t16595H Brassica oleracea HOM05D006111 ORTHO05D007683 2.2e-16 90.9 48 85.4
TPR.G36152 Trifolium pratense HOM05D006111 ORTHO05D007683 4.2e-15 86.7 100 50.0
TAR628G1549 Trochodendron aralioides HOM05D006111 ORTHO05D414729 6.6e-08 62.8 41 68.3
Medtr5g055880 Medicago truncatula HOM05D007086 ORTHO05D008927 2.1e-06 57.8 43 62.8


User provided reference genes

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