Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.L03681 Eucalyptus grandis HOM05D000736 ORTHO05D007707 4.5e-100 367.9 178 100.0
Eucgr.K00728 Eucalyptus grandis HOM05D000736 ORTHO05D007707 2.3e-83 312.4 155 97.4
CSS0049875 Camellia sinensis var. sinensis HOM05D000736 ORTHO05D007707 1.3e-59 233.4 152 75.7
Manes.13G064800 Manihot esculenta HOM05D000736 ORTHO05D007707 1.3e-59 233.4 152 75.7
vmacro12143 Vaccinium macrocarpon HOM05D000736 ORTHO05D007707 1.7e-59 233.0 174 67.2
Cfa014296 Carpinus fangiana HOM05D000736 ORTHO05D007707 1.6e-57 226.5 162 73.5
QL08p029882 Quercus lobata HOM05D000736 ORTHO05D007707 2.1e-57 226.1 163 71.8
Dinv08704 Davidia involucrata HOM05D000736 ORTHO05D007707 4.8e-57 224.9 142 78.2
PGR004G0976 Punica granatum HOM05D000736 ORTHO05D007707 4.8e-57 224.9 151 72.8
Potri.002G219500 Populus trichocarpa HOM05D000736 ORTHO05D007707 6.2e-57 224.6 153 73.9
FAN14G0144 Fragaria x ananassa HOM05D000736 ORTHO05D007707 1.8e-56 223.0 137 78.1
TAR624G0711 Trochodendron aralioides HOM05D000736 ORTHO05D007707 1.8e-56 223.0 142 75.4
FAN05G5831 Fragaria x ananassa HOM05D000736 ORTHO05D007707 3.1e-56 222.2 137 78.1
Sabra02G0171100 Salix brachista HOM05D000736 ORTHO05D007707 6.9e-56 221.1 125 81.6
Hma1.2p1_0133F.1_g060840 Hydrangea macrophylla HOM05D000736 ORTHO05D007707 2.0e-55 219.5 126 81.0
CsaV3_6G015580 Cucumis sativus L. HOM05D000736 ORTHO05D007707 2.6e-55 219.2 161 68.3
MBI13_g30073_MAGBIO Magnolia biondii HOM05D000736 ORTHO05D007707 7.6e-55 217.6 142 71.8
TWI75G0266 Tripterygium wilfordii HOM05D000736 ORTHO05D007707 9.9e-55 217.2 158 69.6
Migut.F02001 Erythranthe guttata HOM05D000736 ORTHO05D007707 1.3e-54 216.9 132 77.3
SalBow4G1832 Salvia bowleyana HOM05D000736 ORTHO05D007707 1.7e-54 216.5 132 77.3
Medtr1g069385 Medicago truncatula HOM05D000736 ORTHO05D007707 4.9e-54 214.9 155 68.4
Lj1A785G51 Lonicera japonica HOM05D000736 ORTHO05D007707 6.4e-54 214.5 141 71.6
Solyc07g049570.3 Solanum lycopersicum HOM05D000736 ORTHO05D007707 6.4e-54 214.5 150 70.0
MSTRG.27459 Avicennia marina HOM05D000736 ORTHO05D007707 1.1e-53 213.8 128 79.7
MELO3C019716.2 Cucumis melo HOM05D000736 ORTHO05D007707 1.1e-53 213.8 162 67.3
Sopen07g024970 Solanum pennellii HOM05D000736 ORTHO05D007707 1.1e-53 213.8 150 70.0
Phvul.007G154300 Phaseolus vulgaris HOM05D000736 ORTHO05D007707 1.9e-53 213.0 137 74.5
PGSC0003DMG400006426 Solanum tuberosum HOM05D000736 ORTHO05D007707 1.9e-53 213.0 150 69.3
CANSAT64G0309 Cannabis sativa HOM05D000736 ORTHO05D007707 2.4e-53 212.6 158 65.8
Nitab4.5_0008746g0030 Nicotiana tabacum HOM05D000736 ORTHO05D007707 2.4e-53 212.6 135 75.6
COL.COLO4_05386 Corchorus olitorius HOM05D000736 ORTHO05D007707 4.2e-53 211.8 155 69.7
Nn1g07966 Nelumbo nucifera HOM05D000736 ORTHO05D007707 7.1e-53 211.1 131 74.8
Nitab4.5_0000130g0180 Nicotiana tabacum HOM05D000736 ORTHO05D007707 9.3e-53 210.7 136 73.5
SalBow8G3370 Salvia bowleyana HOM05D000736 ORTHO05D007707 9.3e-53 210.7 132 75.0
Atru.chr6.3296 Acer truncatum HOM05D000736 ORTHO05D007707 1.2e-52 210.3 164 66.5
Thecc.01G187600 Theobroma cacao HOM05D000736 ORTHO05D007707 1.2e-52 210.3 155 68.4
Haze_12744 Corylus avellana HOM05D000736 ORTHO05D007707 1.6e-52 209.9 186 63.4
GSVIVG01030537001 Vitis vinifera HOM05D000736 ORTHO05D007707 1.6e-52 209.9 137 75.9
Ciclev10015116m.g Citrus clementina HOM05D000736 ORTHO05D007707 2.1e-52 209.5 134 75.4
Atru.chr6.3280 Acer truncatum HOM05D000736 ORTHO05D007707 2.7e-52 209.1 165 66.1
Lalb_Chr06g0170771 Lupinus albus HOM05D000736 ORTHO05D007707 2.7e-52 209.1 152 67.8
CAN.G784.5 Capsicum annuum HOM05D000736 ORTHO05D007707 6.0e-52 208.0 138 72.5
Sed0016142 Sechium edule HOM05D000736 ORTHO05D007707 6.0e-52 208.0 139 70.5
CAN.G741.31 Capsicum annuum HOM05D000736 ORTHO05D007707 1.0e-51 207.2 128 75.0
Cc04_g10360 Coffea canephora HOM05D000736 ORTHO05D007707 1.0e-51 207.2 141 70.9
arahy.Tifrunner.gnm1.ann1.T4YVHB Arachis hypogaea HOM05D000736 ORTHO05D007707 1.3e-51 206.8 127 74.0
Aqoxy1G04108 Aquilegia oxysepala HOM05D000736 ORTHO05D007707 2.3e-51 206.1 137 67.9
FAN02G0028 Fragaria x ananassa HOM05D000736 ORTHO05D007707 2.3e-51 206.1 163 65.0
SGA_v2.0_scaffold478G52232 Striga asiatica HOM05D000736 ORTHO05D007707 2.3e-51 206.1 132 72.7
PSO302G0194 Papaver somniferum HOM05D000736 ORTHO05D007707 3.0e-51 205.7 142 69.7
Duzib133G0031 Durio zibethinus HOM05D000736 ORTHO05D007707 5.1e-51 204.9 117 82.1
Peaxi162Scf01333g00134 Petunia axillaris HOM05D000736 ORTHO05D007707 6.7e-51 204.5 117 78.6
ClCG02G018200 Citrullus lanatus HOM05D000736 ORTHO05D007707 8.7e-51 204.1 162 66.0
MD09G1117200 Malus domestica HOM05D000736 ORTHO05D007707 8.7e-51 204.1 155 63.9
Oeu043936.2 Olea europaea HOM05D000736 ORTHO05D007707 8.7e-51 204.1 158 64.6
RcHm_v2.0_Chr2g0157571 Rosa chinensis HOM05D000736 ORTHO05D007707 8.7e-51 204.1 122 77.9
HanXRQChr16g0508321 Helianthus annuus HOM05D000736 ORTHO05D007707 1.5e-50 203.4 143 70.6
PSO210G3553 Papaver somniferum HOM05D000736 ORTHO05D007707 1.5e-50 203.4 142 69.0
Hma1.2p1_0133F.1_g060830 Hydrangea macrophylla HOM05D000736 ORTHO05D007707 1.9e-50 203.0 138 73.2
VMungo0720G0104 Vigna mungo HOM05D000736 ORTHO05D007707 1.9e-50 203.0 142 69.7
Gohir.D11G158800 Gossypium hirsutum HOM05D000736 ORTHO05D007707 3.3e-50 202.2 137 72.3
FAN09G3712 Fragaria x ananassa HOM05D000736 ORTHO05D007707 7.4e-50 201.1 167 63.5
Gorai.007G169200 Gossypium raimondii HOM05D000736 ORTHO05D007707 7.4e-50 201.1 138 70.3
CSS0040036 Camellia sinensis var. sinensis HOM05D000736 ORTHO05D007707 9.6e-50 200.7 110 82.7
Lsat_1_v5_gn_7_94701 Lactuca sativa HOM05D000736 ORTHO05D007707 1.3e-49 200.3 149 67.1
Hund24130 Selenicereus undatus HOM05D000736 ORTHO05D007707 1.3e-49 200.3 150 68.0
EL10Ac9g22789 Beta vulgaris HOM05D000736 ORTHO05D007707 2.1e-49 199.5 119 78.2
Gohir.A11G151800 Gossypium hirsutum HOM05D000736 ORTHO05D007707 2.1e-49 199.5 138 70.3
CDE07G0785 Ceratophyllum demersum HOM05D000736 ORTHO05D007707 2.8e-49 199.1 137 65.7
Cpa.g.sc132.49 Carica papaya HOM05D000736 ORTHO05D007707 4.8e-49 198.4 199 56.3
Lj5g0007920 Lotus japonicus HOM05D000736 ORTHO05D007707 8.1e-49 197.6 117 78.6
TPR.G17941 Trifolium pratense HOM05D000736 ORTHO05D007707 8.1e-49 197.6 117 77.8
Sc20g0005080 Simmondsia chinensis HOM05D000736 ORTHO05D007707 1.8e-48 196.4 119 77.3
Glyma.10G041100 Glycine max HOM05D000736 ORTHO05D007707 9.0e-48 194.1 137 68.6
arahy.Tifrunner.gnm1.ann1.L1XSI7 Arachis hypogaea HOM05D000736 ORTHO05D007707 1.5e-47 193.4 117 75.2
Glyma.13G128000 Glycine max HOM05D000736 ORTHO05D007707 2.0e-47 193.0 117 75.2
Rhsim06G0170000 Rhododendron simsii HOM05D000736 ORTHO05D007707 2.0e-47 193.0 110 79.1
THA.LOC104808867 Tarenaya hassleriana HOM05D000736 ORTHO05D007707 2.6e-47 192.6 121 73.6
Aa31sc76G30 Aethionema arabicum HOM05D000736 ORTHO05D007707 3.4e-47 192.2 123 75.6
Prupe.3G206600 Prunus persica HOM05D000736 ORTHO05D007707 4.5e-47 191.8 110 78.2
CiPaw.04G192900 Carya illinoinensis HOM05D000736 ORTHO05D007707 2.9e-46 189.1 110 78.2
ATR1101G028 Amborella trichopoda HOM05D000736 ORTHO05D007707 3.8e-46 188.7 152 61.8
Ca_09638_v3 Cicer arietinum L. HOM05D000736 ORTHO05D007707 6.4e-46 188.0 117 73.5
Sp3g23320 Schrenkiella parvula HOM05D000736 ORTHO05D007707 8.4e-46 187.6 155 64.5
unitig_85.g27432 Utricularia gibba HOM05D000736 ORTHO05D007707 8.4e-46 187.6 138 68.8
DCAR_019736 Daucus carota HOM05D000736 ORTHO05D007707 1.1e-45 187.2 112 75.0
AL3G42180 Arabidopsis lyrata HOM05D000736 ORTHO05D007707 1.4e-45 186.8 155 64.5
BraA03t13568Z Brassica rapa HOM05D000736 ORTHO05D007707 2.4e-45 186.0 119 75.6
Thhalv10002523m.g Eutrema salsugineum HOM05D000736 ORTHO05D007707 2.4e-45 186.0 155 65.2
AUR62017566 Chenopodium quinoa HOM05D000736 ORTHO05D007707 5.5e-45 184.9 118 72.0
AUR62015104 Chenopodium quinoa HOM05D000736 ORTHO05D007707 7.1e-45 184.5 116 73.3
BcaB08g34480 Brassica carinata HOM05D000736 ORTHO05D007707 9.3e-45 184.1 119 73.9
AT2G04540 Arabidopsis thaliana HOM05D000736 ORTHO05D007707 1.2e-44 183.7 155 63.9
BcaC01g03196 Brassica carinata HOM05D000736 ORTHO05D007707 1.2e-44 183.7 155 63.9
BolC3t17774H Brassica oleracea HOM05D000736 ORTHO05D007707 1.2e-44 183.7 155 63.9
A03p44380 Brassica napus HOM05D000736 ORTHO05D007707 2.1e-44 183.0 118 75.4
Ah.01g001800 Amaranthus hybridus HOM05D003198 ORTHO05D007707 6.0e-44 181.4 143 60.1
C03p54990 Brassica napus HOM05D000736 ORTHO05D007707 1.5e-42 176.8 116 73.3
ECA236G4050 Erigeron canadensis HOM05D000736 ORTHO05D007707 1.6e-41 173.3 110 74.5
HPP92_002526 Vanilla planifolia HOM05D000736 ORTHO05D007707 6.2e-41 171.4 128 60.2
BcaB08g36033 Brassica carinata HOM05D000736 ORTHO05D016041 1.4e-40 170.2 113 71.7
SEGI_02920 Sequoiadendron giganteum HOM05D000736 ORTHO05D007707 1.8e-40 169.9 134 57.5
Carub.0003s2617 Capsella rubella HOM05D000736 ORTHO05D007707 4.5e-39 165.2 110 72.7
BcaNung05983 Brassica carinata HOM05D000736 ORTHO05D007707 1.0e-38 164.1 113 69.9
Zm00001eb236130 Zea mays HOM05D000736 ORTHO05D007707 2.2e-30 136.3 145 51.7
SMO203G0198 Selaginella moellendorffii HOM05D000736 ORTHO05D007707 3.8e-30 135.6 145 44.8
CBR_g41120 Chara braunii HOM05D000736 ORTHO05D007707 4.2e-29 132.1 150 45.3
Mapoly0191s0005 Marchantia polymorpha HOM05D000736 ORTHO05D007707 5.5e-29 131.7 134 49.3
Hund24199 Selenicereus undatus HOM05D000004 ORTHO05D007707 1.2e-28 130.6 76 75.0
Lsat_1_v5_gn_6_99820 Lactuca sativa HOM05D000736 ORTHO05D007707 2.3e-27 126.3 89 64.0
Duzib138G1396 Durio zibethinus HOM05D000736 ORTHO05D007707 3.0e-27 125.9 118 54.2
BcaB07g34061 Brassica carinata HOM05D000736 ORTHO05D016041 1.9e-26 123.2 82 68.3
Sopen07g024940 Solanum pennellii HOM05D000736 ORTHO05D016041 1.9e-26 123.2 74 73.0
BcaB06g25883 Brassica carinata HOM05D000736 ORTHO05D016041 3.3e-26 122.5 124 50.0
BcaB05g23169 Brassica carinata HOM05D001355 ORTHO05D016041 4.3e-26 122.1 124 51.6
MD15G1342600 Malus domestica HOM05D000736 ORTHO05D016041 5.7e-26 121.7 91 62.6
BcaB02g07198 Brassica carinata HOM05D001527 ORTHO05D016041 2.8e-25 119.4 82 67.1
Pp3c13_3620 Physcomitrium patens HOM05D000736 ORTHO05D007707 2.8e-25 119.4 150 46.0
Psat6g215480 Pisum sativum HOM05D000736 ORTHO05D016041 1.4e-21 107.1 74 68.9
BcaB03g16111 Brassica carinata HOM05D000736 ORTHO05D007707 3.9e-19 99.0 66 72.7
Psat6g064360 Pisum sativum HOM05D000736 ORTHO05D016041 5.1e-19 98.6 96 54.2
Psat5g269320 Pisum sativum HOM05D000736 ORTHO05D007707 1.3e-17 94.0 108 45.4
Cre10.g438050 Chlamydomonas reinhardtii HOM05D000736 ORTHO05D007707 9.1e-16 87.8 141 39.7
BcaB06g25882 Brassica carinata HOM05D000736 ORTHO05D016041 1.5e-15 87.0 66 62.1
MCO03G093 Micromonas commoda HOM05D000736 ORTHO05D007707 2.6e-15 86.3 151 37.1
FvH4_6g41780 Fragaria vesca HOM05D000736 ORTHO05D007707 3.0e-11 72.8 43 79.1
Haze_27082 Corylus avellana HOM05D000736 ORTHO05D007707 1.6e-07 60.5 114 34.2
Eucgr.C03291 Eucalyptus grandis HOM05D000736 ORTHO05D002593 1.0e-06 57.8 133 30.1
PRCOL_00001480 Prasinoderma coloniale HOM05D003301 ORTHO05D003665 1.0e-06 57.8 115 33.9
BolC2t09255H Brassica oleracea HOM05D000736 ORTHO05D002593 2.9e-06 56.2 134 31.3
COL.COLO4_30810 Corchorus olitorius HOM05D000736 ORTHO05D002593 3.8e-06 55.8 137 31.4
Ah.09g229230 Amaranthus hybridus HOM05D000736 ORTHO05D002593 5.0e-06 55.5 133 31.6
Cpa.g.sc79.6 Carica papaya HOM05D000736 ORTHO05D002171 5.0e-06 55.5 149 30.2
Hund15399 Selenicereus undatus HOM05D000736 ORTHO05D002593 5.0e-06 55.5 144 29.9
TPR.G36563 Trifolium pratense HOM05D000736 ORTHO05D002593 5.0e-06 55.5 133 30.8
CBR_g3177 Chara braunii HOM05D000736 ORTHO05D002593 6.5e-06 55.1 124 30.6
Ca_02245_v3 Cicer arietinum L. HOM05D000736 ORTHO05D002593 6.5e-06 55.1 133 30.1
CAN.G567.19 Capsicum annuum HOM05D000736 ORTHO05D002171 8.5e-06 54.7 175 25.7
Manes.03G043700 Manihot esculenta HOM05D000736 ORTHO05D002593 8.5e-06 54.7 138 30.4


User provided reference genes

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