Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.L03611 Eucalyptus grandis HOM05D005878 ORTHO05D007433 4.2e-104 381.3 188 100.0
Eucgr.G03205 Eucalyptus grandis HOM05D005878 ORTHO05D007433 7.8e-58 227.6 108 100.0
PGR031G0581 Punica granatum HOM05D005878 ORTHO05D007433 3.7e-36 155.6 110 72.7
Manes.11G008200 Manihot esculenta HOM05D005878 ORTHO05D007433 2.4e-35 152.9 108 73.1
CiPaw.14G010200 Carya illinoinensis HOM05D005878 ORTHO05D007433 1.3e-33 147.1 109 67.9
Cfa010961 Carpinus fangiana HOM05D005878 ORTHO05D007433 3.9e-33 145.6 108 67.6
Haze_02979 Corylus avellana HOM05D005878 ORTHO05D007433 4.3e-32 142.1 108 65.7
Potri.003G192800 Populus trichocarpa HOM05D005878 ORTHO05D007433 5.6e-32 141.7 108 66.7
ClCG05G027000 Citrullus lanatus HOM05D005878 ORTHO05D007433 2.8e-31 139.4 110 65.5
MELO3C012494.2 Cucumis melo HOM05D005878 ORTHO05D007433 3.6e-31 139.0 109 66.1
CsaV3_5G036960 Cucumis sativus L. HOM05D005878 ORTHO05D007433 3.6e-31 139.0 110 64.5
Sed0004070 Sechium edule HOM05D005878 ORTHO05D007433 3.6e-31 139.0 108 65.7
Oeu006783.1 Olea europaea HOM05D005878 ORTHO05D007433 6.2e-31 138.3 118 55.9
TAR633G2731 Trochodendron aralioides HOM05D005878 ORTHO05D007433 6.2e-31 138.3 112 66.1
Lsat_1_v5_gn_9_74980 Lactuca sativa HOM05D005878 ORTHO05D007433 1.4e-30 137.1 99 68.7
QL04p021553 Quercus lobata HOM05D005878 ORTHO05D007433 2.4e-30 136.3 110 65.5
Thecc.10G140600 Theobroma cacao HOM05D005878 ORTHO05D007433 2.4e-30 136.3 109 66.1
Dinv02557 Davidia involucrata HOM05D005878 ORTHO05D007433 4.0e-30 135.6 110 64.5
Ciclev10002378m.g Citrus clementina HOM05D005878 ORTHO05D007433 5.2e-30 135.2 112 62.5
Sc14g0005230 Simmondsia chinensis HOM05D005878 ORTHO05D007433 5.2e-30 135.2 108 62.0
GSVIVG01036595001 Vitis vinifera HOM05D005878 ORTHO05D007433 6.8e-30 134.8 171 45.6
arahy.Tifrunner.gnm1.ann1.RJ91AH Arachis hypogaea HOM05D005878 ORTHO05D007433 1.2e-29 134.0 110 65.5
MBI03_g45113_MAGBIO Magnolia biondii HOM05D005878 ORTHO05D007433 1.2e-29 134.0 110 65.5
MBI03_g46805_MAGBIO Magnolia biondii HOM05D005878 ORTHO05D007433 1.2e-29 134.0 110 65.5
TAR636G2836 Trochodendron aralioides HOM05D005878 ORTHO05D007433 1.2e-29 134.0 116 64.7
HanXRQChr11g0341301 Helianthus annuus HOM05D005878 ORTHO05D007433 1.5e-29 133.7 99 68.7
Actinidia01690 Actinidia chinensis HOM05D005878 ORTHO05D007433 2.0e-29 133.3 113 64.6
Actinidia01520 Actinidia chinensis HOM05D005878 ORTHO05D007433 2.6e-29 132.9 114 64.0
BcaC03g13176 Brassica carinata HOM05D005878 ORTHO05D007433 2.6e-29 132.9 111 62.2
Sp6g35860 Schrenkiella parvula HOM05D005878 ORTHO05D007433 2.6e-29 132.9 111 63.1
BcaC06g32524 Brassica carinata HOM05D005878 ORTHO05D007433 3.4e-29 132.5 111 62.2
BcaNung04204 Brassica carinata HOM05D005878 ORTHO05D007433 3.4e-29 132.5 111 62.2
A10p28810 Brassica napus HOM05D005878 ORTHO05D007433 3.4e-29 132.5 111 62.2
C09p69150 Brassica napus HOM05D005878 ORTHO05D007433 3.4e-29 132.5 111 62.2
BraA10t44928Z Brassica rapa HOM05D005878 ORTHO05D007433 3.4e-29 132.5 111 62.2
arahy.Tifrunner.gnm1.ann1.7Y8XE1 Arachis hypogaea HOM05D005878 ORTHO05D007433 4.4e-29 132.1 110 64.5
BcaB05g21633 Brassica carinata HOM05D005878 ORTHO05D007433 4.4e-29 132.1 110 62.7
BolC9t59659H Brassica oleracea HOM05D005878 ORTHO05D007433 4.4e-29 132.1 111 62.2
Phvul.005G018300 Phaseolus vulgaris HOM05D005878 ORTHO05D007433 4.4e-29 132.1 109 64.2
Dinv32002 Davidia involucrata HOM05D005878 ORTHO05D007433 9.9e-29 131.0 112 62.5
TWI38G1150 Tripterygium wilfordii HOM05D005878 ORTHO05D007433 9.9e-29 131.0 110 68.2
BcaB05g21635 Brassica carinata HOM05D005878 ORTHO05D007433 1.3e-28 130.6 110 62.7
BcaC03g13174 Brassica carinata HOM05D005878 ORTHO05D007433 1.3e-28 130.6 110 62.7
C02p02970 Brassica napus HOM05D005878 ORTHO05D007433 1.3e-28 130.6 110 62.7
BolC2t06258H Brassica oleracea HOM05D005878 ORTHO05D007433 1.3e-28 130.6 110 62.7
Duzib114G0830 Durio zibethinus HOM05D005878 ORTHO05D007433 1.3e-28 130.6 109 63.3
Glyma.06G309000 Glycine max HOM05D005878 ORTHO05D007433 1.7e-28 130.2 109 64.2
Lalb_Chr01g0007451 Lupinus albus HOM05D005878 ORTHO05D007433 1.7e-28 130.2 108 63.0
VMungo1080G0593 Vigna mungo HOM05D005878 ORTHO05D007433 1.7e-28 130.2 109 63.3
MSTRG.16973 Avicennia marina HOM05D005878 ORTHO05D007433 2.2e-28 129.8 114 60.5
AL6G17170 Arabidopsis lyrata HOM05D005878 ORTHO05D007433 2.9e-28 129.4 105 64.8
COL.COLO4_05616 Corchorus olitorius HOM05D005878 ORTHO05D007433 2.9e-28 129.4 113 62.8
EL10Ac2g02748 Beta vulgaris HOM05D005878 ORTHO05D007433 4.9e-28 128.6 110 58.2
THA.LOC104799332 Tarenaya hassleriana HOM05D005878 ORTHO05D007433 4.9e-28 128.6 112 62.5
MD00G1152600 Malus domestica HOM05D005878 ORTHO05D007433 6.4e-28 128.3 110 61.8
Hund13399 Selenicereus undatus HOM05D005878 ORTHO05D007433 6.4e-28 128.3 109 58.7
MD07G1043600 Malus domestica HOM05D005878 ORTHO05D007433 8.4e-28 127.9 109 62.4
Peaxi162Scf00220g00235 Petunia axillaris HOM05D005878 ORTHO05D007433 8.4e-28 127.9 110 62.7
CDE02G0435 Ceratophyllum demersum HOM05D005878 ORTHO05D007433 1.1e-27 127.5 108 61.1
Lj3g0011478 Lotus japonicus HOM05D005878 ORTHO05D007433 1.1e-27 127.5 109 61.5
AT5G07020 Arabidopsis thaliana HOM05D005878 ORTHO05D007433 1.4e-27 127.1 105 64.8
Gohir.D04G017000 Gossypium hirsutum HOM05D005878 ORTHO05D007433 1.4e-27 127.1 111 61.3
Gorai.012G019700 Gossypium raimondii HOM05D005878 ORTHO05D007433 1.4e-27 127.1 111 61.3
Prupe.2G044200 Prunus persica HOM05D005878 ORTHO05D007433 1.4e-27 127.1 110 61.8
Glyma.04G132400 Glycine max HOM05D005878 ORTHO05D007433 1.9e-27 126.7 109 62.4
Thhalv10014567m.g Eutrema salsugineum HOM05D005878 ORTHO05D007433 3.2e-27 125.9 110 62.7
PSO384G4469 Papaver somniferum HOM05D005878 ORTHO05D007433 4.1e-27 125.6 108 57.4
PSO339G1146 Papaver somniferum HOM05D005878 ORTHO05D007433 5.4e-27 125.2 108 57.4
Medtr3g013460 Medicago truncatula HOM05D005878 ORTHO05D007433 9.2e-27 124.4 109 63.3
Gohir.A05G398900 Gossypium hirsutum HOM05D005878 ORTHO05D007433 1.2e-26 124.0 111 59.5
Aqoxy2G00498 Aquilegia oxysepala HOM05D005878 ORTHO05D007433 1.6e-26 123.6 111 61.3
CDE08G0208 Ceratophyllum demersum HOM05D005878 ORTHO05D007433 1.6e-26 123.6 108 59.3
SalBow2G0433 Salvia bowleyana HOM05D005878 ORTHO05D007433 1.6e-26 123.6 109 59.6
Nn7g36933 Nelumbo nucifera HOM05D005878 ORTHO05D007433 2.1e-26 123.2 112 61.6
RcHm_v2.0_Chr1g0327631 Rosa chinensis HOM05D005878 ORTHO05D007433 2.1e-26 123.2 84 71.4
TWI15G0528 Tripterygium wilfordii HOM05D005878 ORTHO05D007433 2.1e-26 123.2 111 63.1
Nitab4.5_0002838g0030 Nicotiana tabacum HOM05D005878 ORTHO05D007433 2.7e-26 122.9 115 59.1
Carub.0006s0594 Capsella rubella HOM05D005878 ORTHO05D007433 3.5e-26 122.5 105 61.9
ECA248G2695 Erigeron canadensis HOM05D005878 ORTHO05D007433 3.5e-26 122.5 100 62.0
FvH4_7g03940 Fragaria vesca HOM05D005878 ORTHO05D007433 3.5e-26 122.5 84 71.4
FAN01G0732 Fragaria x ananassa HOM05D005878 ORTHO05D007433 3.5e-26 122.5 84 71.4
FAN06G2676 Fragaria x ananassa HOM05D005878 ORTHO05D007433 3.5e-26 122.5 84 71.4
Nitab4.5_0004168g0090 Nicotiana tabacum HOM05D005878 ORTHO05D007433 3.5e-26 122.5 115 57.4
SalBow2G2419 Salvia bowleyana HOM05D005878 ORTHO05D007433 4.6e-26 122.1 104 61.5
Cc00_g09800 Coffea canephora HOM05D005878 ORTHO05D007433 7.8e-26 121.3 99 63.6
PGSC0003DMG400003288 Solanum tuberosum HOM05D005878 ORTHO05D007433 7.8e-26 121.3 115 58.3
BraA02t04902Z Brassica rapa HOM05D005878 ORTHO05D007433 1.0e-25 120.9 97 64.9
Solyc01g096660.3 Solanum lycopersicum HOM05D005878 ORTHO05D007433 1.3e-25 120.6 115 59.1
HPP92_016121 Vanilla planifolia HOM05D005878 ORTHO05D007433 3.0e-25 119.4 109 55.0
CSS0046372 Camellia sinensis var. sinensis HOM05D005878 ORTHO05D007433 3.9e-25 119.0 65 81.5
AUR62032609 Chenopodium quinoa HOM05D005878 ORTHO05D007433 3.9e-25 119.0 109 55.0
Ca_14245_v3 Cicer arietinum L. HOM05D005878 ORTHO05D007433 5.1e-25 118.6 68 82.4
DCAR_006594 Daucus carota HOM05D005878 ORTHO05D007433 5.1e-25 118.6 86 69.8
Sopen01g040380 Solanum pennellii HOM05D005878 ORTHO05D007433 5.1e-25 118.6 115 57.4
CARHR206130 Cardamine hirsuta HOM05D005878 ORTHO05D007433 1.1e-24 117.5 105 60.0
SEGI_13955 Sequoiadendron giganteum HOM05D005878 ORTHO05D007433 1.1e-24 117.5 66 83.3
Rhsim10G0180100 Rhododendron simsii HOM05D005878 ORTHO05D007433 1.5e-24 117.1 122 53.3
vmacro20585 Vaccinium macrocarpon HOM05D005878 ORTHO05D007433 1.5e-24 117.1 112 58.9
ATR1136G020 Amborella trichopoda HOM05D005878 ORTHO05D007433 2.5e-24 116.3 68 80.9
CANSAT01G2833 Cannabis sativa HOM05D005878 ORTHO05D007433 2.5e-24 116.3 117 55.6
Migut.B01182 Erythranthe guttata HOM05D005878 ORTHO05D007433 5.6e-24 115.2 114 55.3
Hma1.2p1_0233F.1_g098360 Hydrangea macrophylla HOM05D005878 ORTHO05D007433 1.8e-22 110.2 61 77.0
unitig_22.g5332 Utricularia gibba HOM05D005878 ORTHO05D007433 1.8e-22 110.2 66 77.3
Os02g0556800 Oryza sativa ssp. japonica HOM05D005878 ORTHO05D007433 5.8e-21 105.1 57 82.5
Zm00001eb182020 Zea mays HOM05D005878 ORTHO05D007433 3.8e-20 102.4 125 46.4
AagrBONN_evm.TU.Sc2ySwM_117.1283 Anthoceros agrestis HOM05D005878 ORTHO05D007433 1.4e-19 100.5 112 46.4
Mapoly0116s0014 Marchantia polymorpha HOM05D005878 ORTHO05D007433 4.2e-19 99.0 68 70.6
AagrBONN_evm.TU.Sc2ySwM_117.450 Anthoceros agrestis HOM05D005878 ORTHO05D007433 1.3e-17 94.0 94 51.1
Pp3c8_5370 Physcomitrium patens HOM05D005878 ORTHO05D007433 4.3e-16 89.0 71 59.2
SMO143G0125 Selaginella moellendorffii HOM05D005878 ORTHO05D007433 4.3e-16 89.0 97 52.6
Cpa.g.sc188.4 Carica papaya HOM05D005878 ORTHO05D007433 7.3e-16 88.2 46 84.8
Pp3c3_32790 Physcomitrium patens HOM05D005878 ORTHO05D007433 9.6e-16 87.8 114 43.0
FAN03G0529 Fragaria x ananassa HOM05D005878 ORTHO05D007433 1.6e-15 87.0 60 71.7
AUR62001069 Chenopodium quinoa HOM05D005878 ORTHO05D007433 2.8e-15 86.3 75 58.7
Aa31sc25G160 Aethionema arabicum HOM05D005878 ORTHO05D007433 6.2e-15 85.1 46 76.1
CBR_g50344 Chara braunii HOM05D005878 ORTHO05D007433 8.1e-15 84.7 80 53.8
Psat5g223120 Pisum sativum HOM05D005878 ORTHO05D007433 2.4e-14 83.2 80 58.8
Hma1.2p1_0233F.1_g098370 Hydrangea macrophylla HOM05D005878 ORTHO05D007433 9.0e-14 81.3 44 79.5
AUR62031722 Chenopodium quinoa HOM05D005878 ORTHO05D007433 1.5e-13 80.5 46 80.4
SGA_v2.0_scaffold430G51553 Striga asiatica HOM05D005878 ORTHO05D007433 3.4e-13 79.3 51 70.6
A03p56860 Brassica napus HOM05D005878 ORTHO05D007433 1.7e-12 77.0 43 76.7
Lj9A656G41 Lonicera japonica HOM05D005878 ORTHO05D007433 3.8e-12 75.9 40 82.5
TPR.G1450 Trifolium pratense HOM05D005878 ORTHO05D007433 4.2e-11 72.4 41 80.5
Atru.chr12.1246 Acer truncatum HOM05D005878 ORTHO05D007433 1.6e-10 70.5 111 47.7
Atru.chr2.3038 Acer truncatum HOM05D005878 ORTHO05D007433 2.5e-08 63.2 40 72.5


User provided reference genes

Program Settings