Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.L03607 Eucalyptus grandis HOM05D005360 ORTHO05D006501 6.0e-51 203.8 94 100.0
Eucgr.B03910 Eucalyptus grandis HOM05D005360 ORTHO05D006501 7.1e-28 127.1 66 87.9
SGA_v2.0_scaffold193G40720 Striga asiatica HOM05D005360 ORTHO05D006501 2.2e-16 89.0 66 60.6
RcHm_v2.0_Chr5g0056101 Rosa chinensis HOM05D005360 ORTHO05D006501 1.8e-15 85.9 66 54.5
Manes.11G154700 Manihot esculenta HOM05D005360 ORTHO05D006501 4.1e-15 84.7 66 60.6
Dinv29396 Davidia involucrata HOM05D005360 ORTHO05D006501 6.9e-15 84.0 66 57.6
Ca_01695_v3 Cicer arietinum L. HOM05D005360 ORTHO05D006501 3.4e-14 81.6 67 55.2
FvH4_3g30230 Fragaria vesca HOM05D005360 ORTHO05D006501 5.9e-14 80.9 66 51.5
FAN11G3336 Fragaria x ananassa HOM05D005360 ORTHO05D006501 5.9e-14 80.9 66 51.5
Glyma.13G219600 Glycine max HOM05D005360 ORTHO05D006501 5.9e-14 80.9 66 54.5
Medtr2g084545 Medicago truncatula HOM05D005360 ORTHO05D006501 5.9e-14 80.9 66 54.5
Ciclev10029076m.g Citrus clementina HOM05D005360 ORTHO05D006501 7.7e-14 80.5 55 61.8
PGR102G1574 Punica granatum HOM05D005360 ORTHO05D006501 7.7e-14 80.5 66 53.0
TPR.G32397 Trifolium pratense HOM05D005360 ORTHO05D006501 7.7e-14 80.5 66 53.0
CANSAT64G2904 Cannabis sativa HOM05D005360 ORTHO05D006501 1.0e-13 80.1 66 53.0
CANSAT64G2995 Cannabis sativa HOM05D005360 ORTHO05D006501 1.0e-13 80.1 66 53.0
CiPaw.13G143100 Carya illinoinensis HOM05D005360 ORTHO05D006501 1.3e-13 79.7 74 52.7
arahy.Tifrunner.gnm1.ann1.E5WW1G Arachis hypogaea HOM05D005360 ORTHO05D004899 2.2e-13 79.0 55 61.8
Hma1.2p1_0051F.1_g029700 Hydrangea macrophylla HOM05D005360 ORTHO05D006501 2.2e-13 79.0 66 54.5
Hma1.2p1_0051F.1_g029710 Hydrangea macrophylla HOM05D005360 ORTHO05D006501 2.2e-13 79.0 66 54.5
MSTRG.21078 Avicennia marina HOM05D005360 ORTHO05D006501 2.9e-13 78.6 66 54.5
FAN21G0874 Fragaria x ananassa HOM05D005360 ORTHO05D006501 2.9e-13 78.6 66 50.0
arahy.Tifrunner.gnm1.ann1.9X9VA5 Arachis hypogaea HOM05D005360 ORTHO05D006501 3.8e-13 78.2 55 61.8
Psat5g252440 Pisum sativum HOM05D005360 ORTHO05D006501 8.5e-13 77.0 66 50.0
vmacro03239 Vaccinium macrocarpon HOM05D005360 ORTHO05D006501 1.1e-12 76.6 66 53.0
MD03G1130500 Malus domestica HOM05D005360 ORTHO05D006501 1.4e-12 76.3 52 63.5
TWI31G0773 Tripterygium wilfordii HOM05D005360 ORTHO05D006501 1.4e-12 76.3 66 51.5
Thecc.09G295200 Theobroma cacao HOM05D005360 ORTHO05D006501 1.9e-12 75.9 47 72.3
Actinidia24162 Actinidia chinensis HOM05D005360 ORTHO05D006501 2.5e-12 75.5 66 50.0
EL10Ac9g21036 Beta vulgaris HOM05D005360 ORTHO05D006501 2.5e-12 75.5 66 51.5
Sed0004275 Sechium edule HOM05D005360 ORTHO05D006501 2.5e-12 75.5 66 53.0
MD11G1152100 Malus domestica HOM05D005360 ORTHO05D006501 3.2e-12 75.1 52 63.5
Nn6g35157 Nelumbo nucifera HOM05D005360 ORTHO05D006501 3.2e-12 75.1 66 51.5
Prupe.6G115300 Prunus persica HOM05D005360 ORTHO05D006501 3.2e-12 75.1 58 56.9
Rhsim13G0102900 Rhododendron simsii HOM05D005360 ORTHO05D006501 3.2e-12 75.1 66 51.5
THA.LOC104800565 Tarenaya hassleriana HOM05D005360 ORTHO05D006501 3.2e-12 75.1 52 57.7
MELO3C021472.2 Cucumis melo HOM05D005360 ORTHO05D006501 4.2e-12 74.7 66 51.5
CsaV3_6G014530 Cucumis sativus L. HOM05D005360 ORTHO05D006501 4.2e-12 74.7 66 51.5
Oeu026987.1 Olea europaea HOM05D005360 ORTHO05D006501 4.2e-12 74.7 66 48.5
Phvul.006G166300 Phaseolus vulgaris HOM05D005360 ORTHO05D006501 4.2e-12 74.7 66 50.0
Potri.009G002000 Populus trichocarpa HOM05D005360 ORTHO05D006501 4.2e-12 74.7 55 56.4
AUR62031793 Chenopodium quinoa HOM05D005360 ORTHO05D006501 5.5e-12 74.3 66 48.5
DCAR_015495 Daucus carota HOM05D005360 ORTHO05D006501 5.5e-12 74.3 66 50.0
CiPaw.13G142900 Carya illinoinensis HOM05D005360 ORTHO05D006501 7.2e-12 73.9 74 52.7
Duzib168G1167 Durio zibethinus HOM05D005360 ORTHO05D006501 7.2e-12 73.9 47 68.1
TAR633G1180 Trochodendron aralioides HOM05D005360 ORTHO05D006501 7.2e-12 73.9 66 51.5
TAR633G1639 Trochodendron aralioides HOM05D005360 ORTHO05D006501 7.2e-12 73.9 66 51.5
Lj1A216T24 Lonicera japonica HOM05D005360 ORTHO05D006501 9.4e-12 73.6 66 51.5
Gohir.A07G106300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.2e-11 73.2 47 68.1
Gohir.D07G110200 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.2e-11 73.2 47 68.1
Migut.D02306 Erythranthe guttata HOM05D005360 ORTHO05D006501 1.6e-11 72.8 49 65.3
Lj3g0014716 Lotus japonicus HOM05D005360 ORTHO05D006501 1.6e-11 72.8 58 53.4
Nitab4.5_0000442g0050 Nicotiana tabacum HOM05D005360 ORTHO05D006501 1.6e-11 72.8 66 48.5
CSS0014580 Camellia sinensis var. sinensis HOM05D005360 ORTHO05D006501 2.1e-11 72.4 66 50.0
Atru.chr3.3432 Acer truncatum HOM05D005360 ORTHO05D006501 2.7e-11 72.0 51 60.8
Gorai.001G118400 Gossypium raimondii HOM05D005360 ORTHO05D006501 4.6e-11 71.2 47 66.0
GSVIVG01031434001 Vitis vinifera HOM05D005360 ORTHO05D006501 4.6e-11 71.2 66 53.0
COL.COLO4_19249 Corchorus olitorius HOM05D000737 ORTHO05D000581 6.1e-11 70.9 53 60.4
Sabra09G0000500 Salix brachista HOM05D005360 ORTHO05D006501 6.1e-11 70.9 47 63.8
unitig_899.g14961 Utricularia gibba HOM05D005360 ORTHO05D006501 6.1e-11 70.9 66 51.5
THA.LOC104826399 Tarenaya hassleriana HOM05D005360 ORTHO05D006501 7.9e-11 70.5 53 56.6
Sc21g0004290 Simmondsia chinensis HOM05D005360 ORTHO05D006501 1.0e-10 70.1 66 47.0
QL01p014311 Quercus lobata HOM05D005360 ORTHO05D006501 1.4e-10 69.7 53 62.3
Hund07728 Selenicereus undatus HOM05D005360 ORTHO05D006501 1.4e-10 69.7 58 55.2
PGSC0003DMG400000427 Solanum tuberosum HOM05D005360 ORTHO05D006501 1.4e-10 69.7 66 47.0
Lsat_1_v5_gn_6_42160 Lactuca sativa HOM05D005360 ORTHO05D006501 1.8e-10 69.3 66 45.5
A08p35270 Brassica napus HOM05D005360 ORTHO05D006501 2.3e-10 68.9 53 54.7
BraA08t35436Z Brassica rapa HOM05D005360 ORTHO05D006501 2.3e-10 68.9 53 54.7
CAN.G546.64 Capsicum annuum HOM05D005360 ORTHO05D006501 2.3e-10 68.9 66 47.0
CiPaw.14G105400 Carya illinoinensis HOM05D005360 ORTHO05D006501 2.3e-10 68.9 47 63.8
Solyc11g066610.2 Solanum lycopersicum HOM05D005360 ORTHO05D006501 2.3e-10 68.9 66 45.5
Ah.01g016120 Amaranthus hybridus HOM05D005360 ORTHO05D006501 3.0e-10 68.6 66 42.4
Aqoxy1G01027 Aquilegia oxysepala HOM05D005360 ORTHO05D006501 3.0e-10 68.6 57 52.6
C08p50100 Brassica napus HOM05D005360 ORTHO05D006501 3.0e-10 68.6 53 52.8
BolC8t52540H Brassica oleracea HOM05D005360 ORTHO05D006501 3.0e-10 68.6 53 52.8
Haze_23502 Corylus avellana HOM05D005360 ORTHO05D006501 3.0e-10 68.6 59 54.2
Cc04_g14880 Coffea canephora HOM05D005360 ORTHO05D006501 3.9e-10 68.2 77 44.2
ATR0665G582 Amborella trichopoda HOM05D005360 ORTHO05D006501 5.1e-10 67.8 66 47.0
BcaC07g42518 Brassica carinata HOM05D005360 ORTHO05D006501 5.1e-10 67.8 53 52.8
Lalb_Chr24g0395031 Lupinus albus HOM05D005360 ORTHO05D006501 5.1e-10 67.8 66 43.9
Thhalv10008429m.g Eutrema salsugineum HOM05D005360 ORTHO05D006501 6.7e-10 67.4 52 53.8
Sp1g06870 Schrenkiella parvula HOM05D005360 ORTHO05D006501 6.7e-10 67.4 53 50.9
Carub.0001s0758 Capsella rubella HOM05D005360 ORTHO05D006501 8.8e-10 67.0 53 50.9
SalBow6G0303 Salvia bowleyana HOM05D005360 ORTHO05D006501 8.8e-10 67.0 66 48.5
Sopen11g026340 Solanum pennellii HOM05D005360 ORTHO05D006501 8.8e-10 67.0 66 43.9
MBI01_g19099_MAGBIO Magnolia biondii HOM05D005360 ORTHO05D006501 1.1e-09 66.6 66 45.5
AL1G18630 Arabidopsis lyrata HOM05D005360 ORTHO05D006501 1.5e-09 66.2 53 50.9
Gohir.1Z049633 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.0e-09 65.9 49 61.2
C08p03560 Brassica napus HOM05D005360 ORTHO05D006501 2.5e-09 65.5 53 50.9
CARHR008050 Cardamine hirsuta HOM05D005360 ORTHO05D006501 3.3e-09 65.1 53 52.8
AT1G08220 Arabidopsis thaliana HOM05D005360 ORTHO05D006501 4.3e-09 64.7 53 49.1
SHI06160 Sapria himalayana HOM05D005360 ORTHO05D006501 4.3e-09 64.7 47 61.7
BolC8t47160H Brassica oleracea HOM05D005360 ORTHO05D006501 5.7e-09 64.3 48 56.2
Aa31LG1G18020 Aethionema arabicum HOM05D005360 ORTHO05D006501 9.7e-09 63.5 50 54.0
HanXRQChr13g0403531 Helianthus annuus HOM05D005360 ORTHO05D006501 9.7e-09 63.5 53 50.9
Gohir.A07G000166 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.7e-08 62.8 49 57.1
PSO063G2369 Papaver somniferum HOM05D005360 ORTHO05D006501 2.8e-08 62.0 57 49.1
PSO339G5504 Papaver somniferum HOM05D005360 ORTHO05D006501 3.7e-08 61.6 58 48.3
CDE09G0858 Ceratophyllum demersum HOM05D005360 ORTHO05D006501 8.2e-08 60.5 55 43.6
Peaxi162Scf00150g00315 Petunia axillaris HOM05D005360 ORTHO05D006501 1.8e-07 59.3 85 38.8
Actinidia07196 Actinidia chinensis HOM05D005360 ORTHO05D006501 4.1e-07 58.2 39 61.5
HPP92_015033 Vanilla planifolia HOM05D005360 ORTHO05D006501 4.1e-07 58.2 66 45.5
HPP92_015112 Vanilla planifolia HOM05D005360 ORTHO05D006501 5.3e-07 57.8 71 45.1
Zm00001eb345720 Zea mays HOM05D005360 ORTHO05D006501 1.5e-06 56.2 47 46.8
Gohir.A06G038884 Gossypium hirsutum HOM05D005360 ORTHO05D006501 3.4e-06 55.1 52 57.7
Zm00001eb137350 Zea mays HOM05D005360 ORTHO05D006501 3.4e-06 55.1 47 44.7
Gohir.A06G100002 Gossypium hirsutum HOM05D005360 ORTHO05D006501 4.5e-06 54.7 35 68.6
Os05g0176500 Oryza sativa ssp. japonica HOM05D005360 ORTHO05D006501 4.5e-06 54.7 47 42.6
Zm00001eb350410 Zea mays HOM05D005360 ORTHO05D006501 5.9e-06 54.3 45 46.7
Zm00001eb410990 Zea mays HOM05D005360 ORTHO05D006501 5.9e-06 54.3 45 46.7


User provided reference genes

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