Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.L03602 Eucalyptus grandis HOM05D003041 ORTHO05D003400 3.9e-51 204.5 105 100.0
Eucgr.G02197 Eucalyptus grandis HOM05D003041 ORTHO05D003400 8.8e-35 150.2 74 100.0
Gohir.D02G145300 Gossypium hirsutum HOM05D003041 ORTHO05D003400 3.8e-14 81.6 65 56.9
Gorai.005G162700 Gossypium raimondii HOM05D003041 ORTHO05D003400 3.8e-14 81.6 65 56.9
FAN07G1313 Fragaria x ananassa HOM05D003041 ORTHO05D003400 6.5e-14 80.9 76 50.0
Manes.15G126800 Manihot esculenta HOM05D003041 ORTHO05D003400 1.1e-13 80.1 66 56.1
RcHm_v2.0_Chr4g0441061 Rosa chinensis HOM05D003041 ORTHO05D003400 1.1e-13 80.1 63 57.1
COL.COLO4_20467 Corchorus olitorius HOM05D003041 ORTHO05D003400 1.5e-13 79.7 62 56.5
FAN17G2366 Fragaria x ananassa HOM05D003041 ORTHO05D003400 1.5e-13 79.7 76 50.0
COL.COLO4_20466 Corchorus olitorius HOM05D003041 ORTHO05D003400 2.5e-13 79.0 62 58.1
Duzib268G0521 Durio zibethinus HOM05D003041 ORTHO05D003400 2.5e-13 79.0 62 59.7
FvH4_4g32270 Fragaria vesca HOM05D003041 ORTHO05D003400 3.2e-13 78.6 76 48.7
FAN12G2939 Fragaria x ananassa HOM05D003041 ORTHO05D003400 3.2e-13 78.6 76 48.7
MD13G1026600 Malus domestica HOM05D003041 ORTHO05D003400 4.2e-13 78.2 66 54.5
vmacro10637 Vaccinium macrocarpon HOM05D003041 ORTHO05D003400 9.5e-13 77.0 62 56.5
Haze_11021 Corylus avellana HOM05D003041 ORTHO05D003400 1.2e-12 76.6 62 54.8
PGR119G0930 Punica granatum HOM05D003041 ORTHO05D003400 1.2e-12 76.6 64 56.2
MD16G1029700 Malus domestica HOM05D003041 ORTHO05D003400 1.6e-12 76.3 65 55.4
Thecc.02G279900 Theobroma cacao HOM05D003041 ORTHO05D003400 1.6e-12 76.3 68 54.4
Prupe.1G323200 Prunus persica HOM05D003041 ORTHO05D003400 2.1e-12 75.9 48 62.5
Lalb_Chr21g0308441 Lupinus albus HOM05D003041 ORTHO05D003400 2.7e-12 75.5 70 51.4
CiPaw.05G248500 Carya illinoinensis HOM05D003041 ORTHO05D003400 3.6e-12 75.1 62 54.8
COL.COLO4_20468 Corchorus olitorius HOM05D003041 ORTHO05D003400 3.6e-12 75.1 62 54.8
Glyma.10G263800 Glycine max HOM05D003041 ORTHO05D003400 3.6e-12 75.1 68 52.9
Phvul.007G038200 Phaseolus vulgaris HOM05D003041 ORTHO05D003400 3.6e-12 75.1 66 53.0
QL01p002017 Quercus lobata HOM05D003041 ORTHO05D003400 3.6e-12 75.1 68 51.5
TWI31G0694 Tripterygium wilfordii HOM05D003041 ORTHO05D003400 4.7e-12 74.7 62 54.8
Actinidia14958 Actinidia chinensis HOM05D003041 ORTHO05D003400 6.1e-12 74.3 48 66.7
Gohir.A03G122700 Gossypium hirsutum HOM05D003041 ORTHO05D003400 6.1e-12 74.3 48 66.7
Ciclev10014737m.g Citrus clementina HOM05D003041 ORTHO05D003400 8.0e-12 73.9 57 57.9
Duzib251G0338 Durio zibethinus HOM05D003041 ORTHO05D003400 1.0e-11 73.6 70 54.3
MD13G1026500 Malus domestica HOM05D003041 ORTHO05D003400 1.0e-11 73.6 62 53.2
TWI31G0001 Tripterygium wilfordii HOM05D003041 ORTHO05D003400 1.0e-11 73.6 69 50.7
Atru.chr1.911 Acer truncatum HOM05D003041 ORTHO05D003400 1.4e-11 73.2 66 57.6
MBI16_g05921_MAGBIO Magnolia biondii HOM05D003041 ORTHO05D003400 1.4e-11 73.2 64 50.0
Medtr1g107555 Medicago truncatula HOM05D003041 ORTHO05D003400 1.8e-11 72.8 61 55.7
Psat6g220240 Pisum sativum HOM05D003041 ORTHO05D003400 1.8e-11 72.8 45 64.4
Ca_27464_v3 Cicer arietinum L. HOM05D003041 ORTHO05D003400 2.3e-11 72.4 71 46.5
GSVIVG01011773001 Vitis vinifera HOM05D003041 ORTHO05D003400 2.3e-11 72.4 58 55.2
CiPaw.05G248400 Carya illinoinensis HOM05D003041 ORTHO05D003400 3.0e-11 72.0 61 54.1
VMungo0720G1513 Vigna mungo HOM05D003041 ORTHO05D003400 3.0e-11 72.0 66 51.5
Atru.chr4.801 Acer truncatum HOM05D003041 ORTHO05D003400 4.0e-11 71.6 70 55.7
Nn3g18197 Nelumbo nucifera HOM05D003041 ORTHO05D003400 4.0e-11 71.6 69 50.7
Peaxi162Scf00205g00119 Petunia axillaris HOM05D003041 ORTHO05D003400 4.0e-11 71.6 61 57.4
Actinidia14957 Actinidia chinensis HOM05D003041 ORTHO05D003400 5.2e-11 71.2 48 64.6
Haze_11020 Corylus avellana HOM05D003041 ORTHO05D003400 5.2e-11 71.2 65 49.2
Migut.L00984 Erythranthe guttata HOM05D003041 ORTHO05D003400 5.2e-11 71.2 69 46.4
Nn4g24113 Nelumbo nucifera HOM05D003041 ORTHO05D003400 5.2e-11 71.2 67 49.3
Lalb_Chr21g0308461 Lupinus albus HOM05D003041 ORTHO05D003400 6.8e-11 70.9 70 48.6
CAN.G1334.9 Capsicum annuum HOM05D003041 ORTHO05D003400 8.8e-11 70.5 62 45.2
PGR119G1292 Punica granatum HOM05D003041 ORTHO05D003400 8.8e-11 70.5 64 50.0
Cpa.g.sc211.3 Carica papaya HOM05D003041 ORTHO05D003400 1.2e-10 70.1 66 47.0
Cfa008593 Carpinus fangiana HOM05D003041 ORTHO05D003400 1.2e-10 70.1 62 51.6
Glyma.20G126500 Glycine max HOM05D003041 ORTHO05D003400 1.2e-10 70.1 68 51.5
GSVIVG01011776001 Vitis vinifera HOM05D003041 ORTHO05D003400 1.2e-10 70.1 48 60.4
Atru.chr11.396 Acer truncatum HOM05D003041 ORTHO05D003400 1.5e-10 69.7 62 51.6
DCAR_030214 Daucus carota HOM05D003041 ORTHO05D003400 1.5e-10 69.7 68 50.0
Duzib248G0865 Durio zibethinus HOM05D003041 ORTHO05D003400 1.5e-10 69.7 62 54.8
Oeu045878.1 Olea europaea HOM05D003041 ORTHO05D003400 2.0e-10 69.3 47 63.8
Potri.010G114200 Populus trichocarpa HOM05D003041 ORTHO05D003400 2.6e-10 68.9 62 48.4
SalBow8G4352 Salvia bowleyana HOM05D003041 ORTHO05D003400 3.4e-10 68.6 61 55.7
Dinv05160 Davidia involucrata HOM05D003041 ORTHO05D003400 4.4e-10 68.2 62 50.0
arahy.Tifrunner.gnm1.ann1.TA5AS1 Arachis hypogaea HOM05D003041 ORTHO05D003400 5.7e-10 67.8 64 45.3
arahy.Tifrunner.gnm1.ann1.YRV6S7 Arachis hypogaea HOM05D003041 ORTHO05D003400 5.7e-10 67.8 64 45.3
CSS0013684 Camellia sinensis var. sinensis HOM05D003041 ORTHO05D003400 5.7e-10 67.8 51 60.8
TPR.G13860 Trifolium pratense HOM05D003041 ORTHO05D003400 5.7e-10 67.8 47 59.6
MSTRG.7628 Avicennia marina HOM05D003041 ORTHO05D003400 9.8e-10 67.0 62 53.2
Sopen05g004120 Solanum pennellii HOM05D003041 ORTHO05D003400 9.8e-10 67.0 48 56.2
QL01p002000 Quercus lobata HOM05D003041 ORTHO05D003400 1.3e-09 66.6 61 52.5
SHI04700 Sapria himalayana HOM05D003041 ORTHO05D003400 1.3e-09 66.6 78 42.3
PGSC0003DMG400030551 Solanum tuberosum HOM05D003041 ORTHO05D003400 1.3e-09 66.6 48 56.2
AT1G23010 Arabidopsis thaliana HOM05D003041 ORTHO05D003400 1.7e-09 66.2 67 46.3
A07p37470 Brassica napus HOM05D003041 ORTHO05D003400 1.7e-09 66.2 69 47.8
C06p45170 Brassica napus HOM05D003041 ORTHO05D003400 1.7e-09 66.2 69 47.8
BolC6t39573H Brassica oleracea HOM05D003041 ORTHO05D003400 1.7e-09 66.2 69 47.8
BraA07t31304Z Brassica rapa HOM05D003041 ORTHO05D003400 1.7e-09 66.2 69 47.8
Cc11_g08850 Coffea canephora HOM05D003041 ORTHO05D003400 1.7e-09 66.2 62 43.5
Lj5g0012593 Lotus japonicus HOM05D003041 ORTHO05D003400 1.7e-09 66.2 63 47.6
Hund28920 Selenicereus undatus HOM05D003041 ORTHO05D003400 1.7e-09 66.2 75 40.0
Hund28921 Selenicereus undatus HOM05D003041 ORTHO05D003400 1.7e-09 66.2 75 40.0
Aqoxy7G02484 Aquilegia oxysepala HOM05D003041 ORTHO05D003400 2.2e-09 65.9 66 51.5
Ciclev10025245m.g Citrus clementina HOM05D003041 ORTHO05D003400 2.2e-09 65.9 56 50.0
MSTRG.891 Avicennia marina HOM05D003041 ORTHO05D003400 2.8e-09 65.5 66 45.5
Sabra10G0084200 Salix brachista HOM05D003041 ORTHO05D003400 2.8e-09 65.5 48 58.3
Atru.chr11.1539 Acer truncatum HOM05D003041 ORTHO05D003400 3.7e-09 65.1 62 48.4
BcaB03g14866 Brassica carinata HOM05D003041 ORTHO05D003400 4.9e-09 64.7 69 47.8
ATR0686G217 Amborella trichopoda HOM05D003041 ORTHO05D003400 6.3e-09 64.3 48 56.2
Thhalv10018329m.g Eutrema salsugineum HOM05D003041 ORTHO05D003400 6.3e-09 64.3 69 46.4
AL2G30610 Arabidopsis lyrata HOM05D003041 ORTHO05D003400 8.3e-09 63.9 68 44.1
BcaB07g32299 Brassica carinata HOM05D003041 ORTHO05D003400 8.3e-09 63.9 70 47.1
Carub.0001s2251 Capsella rubella HOM05D003041 ORTHO05D003400 8.3e-09 63.9 47 57.4
Cpa.g.sc211.4 Carica papaya HOM05D003041 ORTHO05D003400 8.3e-09 63.9 59 50.8
DCAR_023612 Daucus carota HOM05D003041 ORTHO05D003400 8.3e-09 63.9 44 61.4
HanXRQChr15g0488641 Helianthus annuus HOM05D003041 ORTHO05D003400 8.3e-09 63.9 63 44.4
Lj5g0011691 Lotus japonicus HOM05D003041 ORTHO05D003400 8.3e-09 63.9 63 47.6
C05p22220 Brassica napus HOM05D003041 ORTHO05D003400 1.4e-08 63.2 47 59.6
CANSAT01G2422 Cannabis sativa HOM05D003041 ORTHO05D003400 1.4e-08 63.2 60 48.3
Lalb_Chr02g0145381 Lupinus albus HOM05D003041 ORTHO05D003400 1.4e-08 63.2 65 44.6
AL1G36580 Arabidopsis lyrata HOM05D003041 ORTHO05D003400 1.8e-08 62.8 63 49.2
AT1G71040 Arabidopsis thaliana HOM05D003041 ORTHO05D003400 1.8e-08 62.8 79 39.2
A09p41710 Brassica napus HOM05D003041 ORTHO05D003400 1.8e-08 62.8 47 59.6
BraA09t39660Z Brassica rapa HOM05D003041 ORTHO05D003400 2.4e-08 62.4 47 59.6
CSS0038717 Camellia sinensis var. sinensis HOM05D003041 ORTHO05D003400 2.4e-08 62.4 68 44.1
Thhalv10007182m.g Eutrema salsugineum HOM05D003041 ORTHO05D003400 2.4e-08 62.4 69 44.9
Sp1g20470 Schrenkiella parvula HOM05D003041 ORTHO05D003400 3.1e-08 62.0 63 49.2
SGA_v2.0_scaffold38G15066 Striga asiatica HOM05D003041 ORTHO05D003400 3.1e-08 62.0 61 47.5
TAR622G0413 Trochodendron aralioides HOM05D003041 ORTHO05D003400 3.1e-08 62.0 66 45.5
CARHR023390 Cardamine hirsuta HOM05D003041 ORTHO05D003400 5.4e-08 61.2 63 47.6
Sp5g26210 Schrenkiella parvula HOM05D003041 ORTHO05D003400 5.4e-08 61.2 69 43.5
Aa31LG7G7020 Aethionema arabicum HOM05D003041 ORTHO05D003400 7.0e-08 60.8 64 53.1
BcaC05g26213 Brassica carinata HOM05D003041 ORTHO05D003400 7.0e-08 60.8 63 50.8
BolC5t30923H Brassica oleracea HOM05D003041 ORTHO05D003400 7.0e-08 60.8 63 50.8
Carub.0002s1785 Capsella rubella HOM05D003041 ORTHO05D003400 7.0e-08 60.8 53 50.9
Lsat_1_v5_gn_3_54600 Lactuca sativa HOM05D003041 ORTHO05D003400 9.2e-08 60.5 63 41.3
Hma1.2p1_0464F.1_g158300 Hydrangea macrophylla HOM05D003041 ORTHO05D003400 3.5e-07 58.5 40 55.0
THA.LOC104823018 Tarenaya hassleriana HOM05D003041 ORTHO05D003400 4.5e-07 58.2 52 51.9
ECA246G0006 Erigeron canadensis HOM05D003041 ORTHO05D003400 7.7e-07 57.4 64 39.1
AUR62041235 Chenopodium quinoa HOM05D003041 ORTHO05D003400 1.3e-06 56.6 62 40.3
HPP92_021474 Vanilla planifolia HOM05D003041 ORTHO05D003400 1.7e-06 56.2 44 56.8
Nitab4.5_0004776g0020 Nicotiana tabacum HOM05D003041 ORTHO05D003400 2.9e-06 55.5 51 49.0
HPP92_021851 Vanilla planifolia HOM05D003041 ORTHO05D003400 5.0e-06 54.7 44 50.0
Cfa008595 Carpinus fangiana HOM05D003041 ORTHO05D003400 6.6e-06 54.3 36 55.6
Os01g0126200 Oryza sativa ssp. japonica HOM05D003041 ORTHO05D003400 8.6e-06 53.9 69 43.5


User provided reference genes

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