Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B02616 Eucalyptus grandis HOM05D007662 ORTHO05D009666 2.4e-34 148.3 77 100.0
Eucgr.L03549 Eucalyptus grandis HOM05D007662 ORTHO05D009666 2.4e-34 148.3 77 100.0
Lj1g0001682 Lotus japonicus HOM05D007662 ORTHO05D009666 2.2e-11 72.0 47 78.7
Nitab4.5_0007654g0010 Nicotiana tabacum HOM05D007662 ORTHO05D009666 2.2e-11 72.0 73 52.1
HanXRQChr02g0056871 Helianthus annuus HOM05D007662 ORTHO05D009666 8.5e-11 70.1 61 59.0
Hma1.2p1_0972F.1_g242860 Hydrangea macrophylla HOM05D007662 ORTHO05D009666 8.5e-11 70.1 47 80.9
Cfa009623 Carpinus fangiana HOM05D007662 ORTHO05D009666 1.1e-10 69.7 38 84.2
Haze_22992 Corylus avellana HOM05D007662 ORTHO05D009666 1.1e-10 69.7 38 84.2
PGSC0003DMG400015999 Solanum tuberosum HOM05D007662 ORTHO05D009666 1.1e-10 69.7 56 64.3
Phvul.008G106450 Phaseolus vulgaris HOM05D007662 ORTHO05D009666 1.4e-10 69.3 47 74.5
arahy.Tifrunner.gnm1.ann1.MELV6S Arachis hypogaea HOM05D007662 ORTHO05D009666 1.9e-10 68.9 45 77.8
Glyma.07G131900 Glycine max HOM05D007662 ORTHO05D009666 1.9e-10 68.9 50 68.0
Glyma.18G180600 Glycine max HOM05D007662 ORTHO05D009666 2.5e-10 68.6 50 68.0
PGSC0003DMG400017905 Solanum tuberosum HOM05D007662 ORTHO05D009666 2.5e-10 68.6 56 62.5
CSS0010518 Camellia sinensis var. sinensis HOM05D007662 ORTHO05D009666 3.2e-10 68.2 38 86.8
AL3G53480 Arabidopsis lyrata HOM05D007662 ORTHO05D009666 4.2e-10 67.8 49 71.4
CiPaw.12G007400 Carya illinoinensis HOM05D007662 ORTHO05D009666 4.2e-10 67.8 38 84.2
FAN16G0597 Fragaria x ananassa HOM05D007662 ORTHO05D009666 4.2e-10 67.8 47 72.3
Medtr4g095740 Medicago truncatula HOM05D007662 ORTHO05D009666 4.2e-10 67.8 49 71.4
RcHm_v2.0_Chr5g0081401 Rosa chinensis HOM05D007662 ORTHO05D009666 4.2e-10 67.8 48 75.0
Cpa.g.sc119.89 Carica papaya HOM05D007662 ORTHO05D009666 5.5e-10 67.4 36 91.7
TWI32G0733 Tripterygium wilfordii HOM05D007662 ORTHO05D009666 5.5e-10 67.4 37 89.2
Aa31LG8G17430 Aethionema arabicum HOM05D007662 ORTHO05D009666 7.2e-10 67.0 50 64.0
Lsat_1_v5_gn_6_51400 Lactuca sativa HOM05D007662 ORTHO05D009666 7.2e-10 67.0 51 66.7
Nn7g35960 Nelumbo nucifera HOM05D007662 ORTHO05D009666 7.2e-10 67.0 36 88.9
PGR119G1192 Punica granatum HOM05D007662 ORTHO05D009666 7.2e-10 67.0 39 82.1
TAR623G1524 Trochodendron aralioides HOM05D007662 ORTHO05D009666 7.2e-10 67.0 42 81.0
BcaB03g16842 Brassica carinata HOM05D007662 ORTHO05D009666 9.4e-10 66.6 36 88.9
Carub.0003s3490 Capsella rubella HOM05D007662 ORTHO05D009666 9.4e-10 66.6 36 88.9
Carub.0003s3492 Capsella rubella HOM05D007662 ORTHO05D009666 9.4e-10 66.6 36 88.9
arahy.Tifrunner.gnm1.ann1.0G84UH Arachis hypogaea HOM05D007662 ORTHO05D009666 1.2e-09 66.2 45 75.6
Cc01_g01030 Coffea canephora HOM05D007662 ORTHO05D009666 1.2e-09 66.2 44 75.0
Duzib168G0137 Durio zibethinus HOM05D007662 ORTHO05D009666 1.2e-09 66.2 53 69.8
FAN11G0548 Fragaria x ananassa HOM05D007662 ORTHO05D009666 1.2e-09 66.2 47 72.3
FAN21G0034 Fragaria x ananassa HOM05D007662 ORTHO05D009666 1.2e-09 66.2 47 72.3
FAN25G2111 Fragaria x ananassa HOM05D007662 ORTHO05D009666 1.2e-09 66.2 47 72.3
PSO384G2541 Papaver somniferum HOM05D007662 ORTHO05D009666 1.2e-09 66.2 38 84.2
Sopen01g015220 Solanum pennellii HOM05D007662 ORTHO05D009666 1.2e-09 66.2 73 52.1
Migut.N02119 Erythranthe guttata HOM05D007662 ORTHO05D009666 1.6e-09 65.9 36 88.9
Psat3g140280 Pisum sativum HOM05D007662 ORTHO05D009666 1.6e-09 65.9 38 86.8
Rhsim02G0233800 Rhododendron simsii HOM05D007662 ORTHO05D009666 1.6e-09 65.9 43 76.7
CARHR111030 Cardamine hirsuta HOM05D007662 ORTHO05D009666 2.1e-09 65.5 36 86.1
Solyc01g020320.3 Solanum lycopersicum HOM05D007662 ORTHO05D009666 2.1e-09 65.5 73 52.1
Peaxi162Scf00336g00087 Petunia axillaris HOM05D007662 ORTHO05D009666 2.7e-09 65.1 38 81.6
Peaxi162Scf00451g00322 Petunia axillaris HOM05D007662 ORTHO05D009666 2.7e-09 65.1 36 86.1
SalBow6G4367 Salvia bowleyana HOM05D007662 ORTHO05D009666 2.7e-09 65.1 37 86.5
SalBow8G2777 Salvia bowleyana HOM05D007662 ORTHO05D009666 2.7e-09 65.1 37 86.5
CANSAT54G1122 Cannabis sativa HOM05D007662 ORTHO05D009666 3.6e-09 64.7 36 88.9
Nitab4.5_0000488g0050 Nicotiana tabacum HOM05D007662 ORTHO05D009666 3.6e-09 64.7 46 69.6
Oeu002702.1 Olea europaea HOM05D007662 ORTHO05D009666 3.6e-09 64.7 37 86.5
Atru.chr3.2207 Acer truncatum HOM05D007662 ORTHO05D009666 4.6e-09 64.3 38 81.6
AT2G20480 Arabidopsis thaliana HOM05D007662 ORTHO05D009666 4.6e-09 64.3 35 88.6
BcaC06g36736 Brassica carinata HOM05D007662 ORTHO05D009666 4.6e-09 64.3 35 88.6
A07p00270 Brassica napus HOM05D007662 ORTHO05D009666 4.6e-09 64.3 35 88.6
C07p00560 Brassica napus HOM05D007662 ORTHO05D009666 4.6e-09 64.3 35 88.6
BolC7t40501H Brassica oleracea HOM05D007662 ORTHO05D009666 4.6e-09 64.3 35 88.6
BraA07t27819Z Brassica rapa HOM05D007662 ORTHO05D009666 4.6e-09 64.3 35 88.6
MD03G1011000 Malus domestica HOM05D007662 ORTHO05D009666 4.6e-09 64.3 48 70.8
Prupe.6G011500 Prunus persica HOM05D007662 ORTHO05D009666 4.6e-09 64.3 36 88.9
MBI13_g29646_MAGBIO Magnolia biondii HOM05D007662 ORTHO05D009666 6.1e-09 63.9 36 86.1
C08p42210 Brassica napus HOM05D007662 ORTHO05D009666 7.9e-09 63.5 42 73.8
BolC8t51780H Brassica oleracea HOM05D007662 ORTHO05D009666 7.9e-09 63.5 42 73.8
Thhalv10002142m.g Eutrema salsugineum HOM05D007662 ORTHO05D009666 7.9e-09 63.5 42 73.8
Manes.15G104500 Manihot esculenta HOM05D007662 ORTHO05D009666 7.9e-09 63.5 43 72.1
Rhsim02G0233900 Rhododendron simsii HOM05D007662 ORTHO05D009666 7.9e-09 63.5 54 64.8
Sp3g33680 Schrenkiella parvula HOM05D007662 ORTHO05D009666 7.9e-09 63.5 42 73.8
Gohir.A08G012100 Gossypium hirsutum HOM05D007662 ORTHO05D009666 1.0e-08 63.2 55 63.6
Gohir.D08G022600 Gossypium hirsutum HOM05D007662 ORTHO05D009666 1.0e-08 63.2 55 63.6
Gorai.004G017900 Gossypium raimondii HOM05D007662 ORTHO05D009666 1.0e-08 63.2 55 63.6
Lalb_Chr03g0042221 Lupinus albus HOM05D007662 ORTHO05D009666 1.0e-08 63.2 38 81.6
BcaB08g34910 Brassica carinata HOM05D007662 ORTHO05D009666 1.4e-08 62.8 42 71.4
A09p58880 Brassica napus HOM05D007662 ORTHO05D009666 1.4e-08 62.8 35 85.7
BraA09t41274Z Brassica rapa HOM05D007662 ORTHO05D009666 1.4e-08 62.8 35 85.7
Prupe.2G113800 Prunus persica HOM05D007662 ORTHO05D009666 1.4e-08 62.8 37 86.5
ATR0598G132 Amborella trichopoda HOM05D007662 ORTHO05D009666 1.8e-08 62.4 52 63.5
Potri.001G009501 Populus trichocarpa HOM05D007662 ORTHO05D009666 2.3e-08 62.0 36 83.3
HPP92_019156 Vanilla planifolia HOM05D007662 ORTHO05D009666 2.3e-08 62.0 45 66.7
Aqoxy1G00152 Aquilegia oxysepala HOM05D007662 ORTHO05D009666 3.0e-08 61.6 75 45.3
Sabra01G0007400 Salix brachista HOM05D007662 ORTHO05D009666 3.0e-08 61.6 36 80.6
Thecc.09G214700 Theobroma cacao HOM05D007662 ORTHO05D009666 3.9e-08 61.2 42 76.2
GSVIVG01025388001 Vitis vinifera HOM05D007662 ORTHO05D009666 3.9e-08 61.2 49 63.3
BcaC07g41215 Brassica carinata HOM05D007662 ORTHO05D009666 5.1e-08 60.8 42 71.4
COL.COLO4_10450 Corchorus olitorius HOM05D007662 ORTHO05D009666 5.1e-08 60.8 36 83.3
Os09g0446000 Oryza sativa ssp. japonica HOM05D007662 ORTHO05D009666 5.1e-08 60.8 35 80.0
DCAR_024358 Daucus carota HOM05D007662 ORTHO05D009666 6.7e-08 60.5 46 67.4
unitig_8.g3321 Utricularia gibba HOM05D007662 ORTHO05D009666 6.7e-08 60.5 37 78.4
CsaV3_4G023520 Cucumis sativus L. HOM05D007662 ORTHO05D009666 1.5e-07 59.3 52 63.5
ECA233G5312 Erigeron canadensis HOM05D007662 ORTHO05D009666 2.0e-07 58.9 35 77.1
Sed0021510 Sechium edule HOM05D007662 ORTHO05D009666 2.6e-07 58.5 51 62.7
ClCG02G023850 Citrullus lanatus HOM05D007662 ORTHO05D009666 4.4e-07 57.8 71 52.1
Hund07566 Selenicereus undatus HOM05D007662 ORTHO05D009666 4.4e-07 57.8 55 58.2
Manes.04G126551 Manihot esculenta HOM05D007662 ORTHO05D009666 5.7e-07 57.4 48 68.8
SEGI_07868 Sequoiadendron giganteum HOM05D007662 ORTHO05D009666 2.8e-06 55.1 45 60.0


User provided reference genes

Program Settings