Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.L03504 Eucalyptus grandis HOM05D004599 ORTHO05D005564 4.2e-176 621.3 324 100.0
Eucgr.B02965 Eucalyptus grandis HOM05D004599 ORTHO05D005564 2.1e-167 592.4 324 96.3
Eucgr.D02003 Eucalyptus grandis HOM05D004599 ORTHO05D005564 1.8e-107 393.3 211 99.1
PGR004G1602 Punica granatum HOM05D004599 ORTHO05D005564 9.4e-104 380.9 328 62.2
Eucgr.H03725 Eucalyptus grandis HOM05D004599 ORTHO05D005564 6.1e-103 378.3 281 74.7
Thecc.04G218800 Theobroma cacao HOM05D004599 ORTHO05D005564 7.0e-91 338.2 350 54.9
Ciclev10004289m.g Citrus clementina HOM05D004599 ORTHO05D005564 9.2e-91 337.8 330 56.7
Dinv27138 Davidia involucrata HOM05D004599 ORTHO05D005564 2.0e-90 336.7 337 54.9
Gohir.A02G025500 Gossypium hirsutum HOM05D004599 ORTHO05D005564 2.0e-90 336.7 350 56.3
Atru.chr4.1870 Acer truncatum HOM05D004599 ORTHO05D005564 1.3e-89 334.0 328 58.2
Duzib151G0579 Durio zibethinus HOM05D004599 ORTHO05D005564 1.5e-88 330.5 350 54.6
Gorai.005G036200 Gossypium raimondii HOM05D004599 ORTHO05D005564 1.6e-87 327.0 350 54.6
Duzib212G0332 Durio zibethinus HOM05D004599 ORTHO05D005564 2.8e-87 326.2 329 56.5
TAR365G0001 Trochodendron aralioides HOM05D004599 ORTHO05D005564 6.1e-87 325.1 337 54.6
Manes.03G155700 Manihot esculenta HOM05D004599 ORTHO05D005564 1.4e-86 323.9 327 54.7
Potri.010G062700 Populus trichocarpa HOM05D004599 ORTHO05D005564 8.9e-86 321.2 327 56.0
Cfa014829 Carpinus fangiana HOM05D004599 ORTHO05D005564 4.4e-85 318.9 336 53.0
TWI09G0954 Tripterygium wilfordii HOM05D004599 ORTHO05D005564 2.9e-84 316.2 338 52.4
Actinidia35930 Actinidia chinensis HOM05D004599 ORTHO05D005564 3.2e-83 312.8 336 53.0
Hma1.2p1_1076F.1_g254550 Hydrangea macrophylla HOM05D004599 ORTHO05D005564 3.2e-83 312.8 329 53.5
CiPaw.01G175100 Carya illinoinensis HOM05D004599 ORTHO05D005564 9.2e-83 311.2 335 53.4
CANSAT78G2223 Cannabis sativa HOM05D004599 ORTHO05D005564 3.5e-82 309.3 333 52.3
CSS0038132 Camellia sinensis var. sinensis HOM05D004599 ORTHO05D005564 7.8e-82 308.1 333 52.0
vmacro00526 Vaccinium macrocarpon HOM05D004599 ORTHO05D005564 1.7e-81 307.0 329 53.2
Nn1g03051 Nelumbo nucifera HOM05D004599 ORTHO05D005564 6.6e-81 305.1 335 50.4
Nitab4.5_0000867g0040 Nicotiana tabacum HOM05D004599 ORTHO05D005564 6.6e-81 305.1 330 50.3
Nitab4.5_0000451g0060 Nicotiana tabacum HOM05D004599 ORTHO05D005564 1.9e-80 303.5 334 51.2
Peaxi162Scf00125g01026 Petunia axillaris HOM05D004599 ORTHO05D005564 1.9e-80 303.5 332 50.6
Prupe.1G054000 Prunus persica HOM05D004599 ORTHO05D005564 2.5e-80 303.1 331 50.5
Gohir.D02G032700 Gossypium hirsutum HOM05D004599 ORTHO05D005564 3.3e-80 302.8 401 47.9
CAN.G812.39 Capsicum annuum HOM05D004599 ORTHO05D005564 6.2e-79 298.5 329 50.8
FAN07G1323 Fragaria x ananassa HOM05D004599 ORTHO05D005564 3.1e-78 296.2 332 50.6
Cpa.g.sc59.43 Carica papaya HOM05D004599 ORTHO05D005564 4.0e-78 295.8 356 49.2
FAN17G0126 Fragaria x ananassa HOM05D004599 ORTHO05D005564 5.2e-78 295.4 332 50.6
Rhsim09G0044400 Rhododendron simsii HOM05D004599 ORTHO05D005564 5.2e-78 295.4 324 52.2
Solyc09g091050.4 Solanum lycopersicum HOM05D004599 ORTHO05D005564 5.2e-78 295.4 328 49.7
Haze_11507 Corylus avellana HOM05D004599 ORTHO05D005564 8.9e-78 294.7 323 51.1
MD13G1226600 Malus domestica HOM05D004599 ORTHO05D005564 5.8e-77 292.0 329 50.2
FvH4_4g05250 Fragaria vesca HOM05D004599 ORTHO05D005564 2.2e-76 290.0 332 49.4
FAN12G1799 Fragaria x ananassa HOM05D004599 ORTHO05D005564 2.2e-76 290.0 332 49.4
Sopen09g034030 Solanum pennellii HOM05D004599 ORTHO05D005564 2.9e-76 289.7 340 47.9
Sc19g0005730 Simmondsia chinensis HOM05D004599 ORTHO05D005564 3.7e-76 289.3 334 50.0
ClCG11G000260 Citrullus lanatus HOM05D004599 ORTHO05D005564 8.3e-76 288.1 321 48.9
HanXRQChr07g0185811 Helianthus annuus HOM05D004599 ORTHO05D005564 1.4e-75 287.3 324 51.9
Sabra10G0044000 Salix brachista HOM05D004599 ORTHO05D005564 3.2e-75 286.2 312 53.5
COL.COLO4_07140 Corchorus olitorius HOM05D004599 ORTHO05D005564 5.4e-75 285.4 335 51.9
RcHm_v2.0_Chr4g0396161 Rosa chinensis HOM05D004599 ORTHO05D005564 5.4e-75 285.4 332 49.1
Sed0004443 Sechium edule HOM05D004599 ORTHO05D005564 7.1e-75 285.0 321 48.6
ECA233G3541 Erigeron canadensis HOM05D004599 ORTHO05D005564 9.2e-75 284.6 323 49.8
CsaV3_5G015660 Cucumis sativus L. HOM05D004599 ORTHO05D005564 1.6e-74 283.9 333 47.4
Hund19266 Selenicereus undatus HOM05D004599 ORTHO05D005564 2.1e-74 283.5 333 50.2
AUR62035896 Chenopodium quinoa HOM05D004599 ORTHO05D005564 1.5e-72 277.3 329 47.4
Lalb_Chr03g0036871 Lupinus albus HOM05D004599 ORTHO05D005564 1.5e-72 277.3 334 47.0
MBI07_g14440_MAGBIO Magnolia biondii HOM05D004599 ORTHO05D005564 1.5e-72 277.3 336 47.6
MELO3C022936.2 Cucumis melo HOM05D004599 ORTHO05D005564 2.5e-72 276.6 333 48.0
Glyma.10G130800 Glycine max HOM05D004599 ORTHO05D005564 2.5e-72 276.6 338 47.6
Ca_26211_v3 Cicer arietinum L. HOM05D004599 ORTHO05D005564 5.6e-72 275.4 341 45.7
Medtr1g045930 Medicago truncatula HOM05D004599 ORTHO05D005564 5.6e-72 275.4 331 48.6
Psat0s3917g0040 Pisum sativum HOM05D004599 ORTHO05D005564 2.8e-71 273.1 332 46.7
Cc03_g06960 Coffea canephora HOM05D004599 ORTHO05D005564 4.7e-71 272.3 335 45.7
Lj3A633T10 Lonicera japonica HOM05D004599 ORTHO05D005564 4.7e-71 272.3 316 49.7
AUR62035344 Chenopodium quinoa HOM05D004599 ORTHO05D005564 1.8e-70 270.4 333 46.5
BcaC02g09417 Brassica carinata HOM05D004599 ORTHO05D005564 2.3e-70 270.0 323 47.4
C04p42390 Brassica napus HOM05D004599 ORTHO05D005564 2.3e-70 270.0 323 47.4
BolC4t25820H Brassica oleracea HOM05D004599 ORTHO05D005564 2.3e-70 270.0 323 47.4
Glyma.20G081500 Glycine max HOM05D004599 ORTHO05D005564 2.3e-70 270.0 337 46.0
SGA_v2.0_scaffold155G37242 Striga asiatica HOM05D004599 ORTHO05D005564 6.8e-70 268.5 331 45.9
A04p08630 Brassica napus HOM05D004599 ORTHO05D005564 8.9e-70 268.1 325 47.1
BraA04t16557Z Brassica rapa HOM05D004599 ORTHO05D005564 8.9e-70 268.1 325 47.1
Sp7g11150 Schrenkiella parvula HOM05D004599 ORTHO05D005564 2.0e-69 266.9 328 48.5
BcaB03g16085 Brassica carinata HOM05D004599 ORTHO05D005564 2.6e-69 266.5 327 47.4
Phvul.007G232800 Phaseolus vulgaris HOM05D004599 ORTHO05D005564 3.4e-69 266.2 339 44.8
VMungo0720G2025 Vigna mungo HOM05D004599 ORTHO05D005564 3.4e-69 266.2 339 45.1
TPR.G23991 Trifolium pratense HOM05D004599 ORTHO05D005564 4.4e-69 265.8 331 46.2
Psat0s2340g0040 Pisum sativum HOM05D004599 ORTHO05D005564 9.9e-69 264.6 331 44.1
Lj6g0015914 Lotus japonicus HOM05D004599 ORTHO05D005564 3.7e-68 262.7 338 45.9
EL10Ac3g06729 Beta vulgaris HOM05D004599 ORTHO05D005564 4.9e-68 262.3 334 46.1
AL7G43140 Arabidopsis lyrata HOM05D004599 ORTHO05D005564 6.4e-68 261.9 346 45.7
Migut.O00257 Erythranthe guttata HOM05D004599 ORTHO05D005564 6.4e-68 261.9 325 48.3
PGSC0003DMG403001548 Solanum tuberosum HOM05D004599 ORTHO05D005564 8.3e-68 261.5 317 47.0
Thhalv10024569m.g Eutrema salsugineum HOM05D004599 ORTHO05D005564 3.2e-67 259.6 335 46.0
Oeu008817.2 Olea europaea HOM05D004599 ORTHO05D005564 1.0e-65 254.6 342 44.2
AT4G13550 Arabidopsis thaliana HOM05D004599 ORTHO05D005564 5.1e-65 252.3 343 44.3
Aa31LG9G4110 Aethionema arabicum HOM05D004599 ORTHO05D005564 3.3e-64 249.6 329 44.4
CARHR219180 Cardamine hirsuta HOM05D004599 ORTHO05D005564 1.2e-63 247.7 349 43.0
FAN22G0163 Fragaria x ananassa HOM05D004599 ORTHO05D005564 1.2e-63 247.7 330 46.4
Lsat_1_v5_gn_6_67861 Lactuca sativa HOM05D004599 ORTHO05D005564 1.6e-63 247.3 331 46.2
PSO832G1760 Papaver somniferum HOM05D004599 ORTHO05D005564 6.2e-63 245.4 345 42.3
SalBow2G1411 Salvia bowleyana HOM05D004599 ORTHO05D005564 6.2e-63 245.4 333 45.0
Carub.0007s2899 Capsella rubella HOM05D004599 ORTHO05D005564 2.4e-62 243.4 348 42.2
Aqoxy5G00088 Aquilegia oxysepala HOM05D004599 ORTHO05D005564 8.9e-62 241.5 338 44.4
DCAR_024304 Daucus carota HOM05D004599 ORTHO05D005564 1.3e-60 237.7 406 37.9
unitig_32.g10859 Utricularia gibba HOM05D004599 ORTHO05D005564 2.7e-58 229.9 280 44.6
ATR0088G024 Amborella trichopoda HOM05D004599 ORTHO05D005564 1.2e-53 214.5 350 38.9
arahy.Tifrunner.gnm1.ann1.7X6UW5 Arachis hypogaea HOM05D004599 ORTHO05D005564 3.4e-53 213.0 350 40.0
Ah.13g074990 Amaranthus hybridus HOM05D004599 ORTHO05D005564 5.8e-53 212.2 314 41.4
Oeu007539.1 Olea europaea HOM05D004599 ORTHO05D005564 3.5e-50 203.0 279 45.2
Os04g0509100 Oryza sativa ssp. japonica HOM05D004599 ORTHO05D005564 4.6e-50 202.6 355 37.5
Zm00001eb426320 Zea mays HOM05D004599 ORTHO05D005564 7.8e-50 201.8 350 37.4
CDE05G1749 Ceratophyllum demersum HOM05D004599 ORTHO05D005564 5.3e-46 189.1 316 38.6
HPP92_012645 Vanilla planifolia HOM05D004599 ORTHO05D005564 1.7e-44 184.1 331 36.6
PGSC0003DMG400011568 Solanum tuberosum HOM05D004599 ORTHO05D005564 3.8e-44 183.0 176 58.5
Sed0019442 Sechium edule HOM05D004599 ORTHO05D005564 6.2e-31 139.0 257 36.6
arahy.Tifrunner.gnm1.ann1.K13S6W Arachis hypogaea HOM05D004599 ORTHO05D005564 4.1e-30 136.3 182 44.5
Hma1.2p1_1076F.1_g254540 Hydrangea macrophylla HOM05D004599 ORTHO05D005564 1.7e-28 131.0 146 49.3
CAN.G404.62 Capsicum annuum HOM05D004599 ORTHO05D005564 2.4e-22 110.5 113 54.9
Pp3c16_6180 Physcomitrium patens HOM05D004599 ORTHO05D005564 3.9e-17 93.2 336 25.9
Mapoly0081s0062 Marchantia polymorpha HOM05D004599 ORTHO05D005564 9.1e-14 82.0 345 26.7
SMO358G0364 Selaginella moellendorffii HOM05D004599 ORTHO05D005564 2.0e-08 64.3 71 40.8
arahy.Tifrunner.gnm1.ann1.FPL62J Arachis hypogaea HOM05D004599 ORTHO05D005564 1.4e-06 58.2 132 31.1


User provided reference genes

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