Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.D01305 Eucalyptus grandis HOM05D004992 ORTHO05D006004 1.1e-47 193.0 97 100.0
Eucgr.L03501 Eucalyptus grandis HOM05D004992 ORTHO05D006004 1.1e-47 193.0 97 100.0
QL05p074036 Quercus lobata HOM05D004992 ORTHO05D006004 9.6e-20 100.1 108 55.6
CiPaw.09G089400 Carya illinoinensis HOM05D004992 ORTHO05D006004 8.2e-19 97.1 108 53.7
Potri.004G018600 Populus trichocarpa HOM05D004992 ORTHO05D006004 1.1e-18 96.7 108 55.6
CiPaw.10G069500 Carya illinoinensis HOM05D004992 ORTHO05D006004 6.9e-18 94.0 107 53.3
Ciclev10016836m.g Citrus clementina HOM05D004992 ORTHO05D006004 6.9e-18 94.0 109 49.5
Sabra04G0010400 Salix brachista HOM05D003428 ORTHO05D004131 4.5e-17 91.3 108 51.9
Cpa.g.sc198.27 Carica papaya HOM05D004992 ORTHO05D006004 5.8e-17 90.9 109 49.5
Duzib235G0746 Durio zibethinus HOM05D004992 ORTHO05D006004 5.8e-17 90.9 110 50.9
Gohir.A06G147400 Gossypium hirsutum HOM05D004992 ORTHO05D006004 2.2e-16 89.0 108 46.3
Gohir.D06G153200 Gossypium hirsutum HOM05D004992 ORTHO05D006004 3.8e-16 88.2 108 45.4
Gorai.010G179200 Gossypium raimondii HOM05D004992 ORTHO05D006004 3.8e-16 88.2 108 45.4
GSVIVG01012656001 Vitis vinifera HOM05D004992 ORTHO05D006004 3.8e-16 88.2 111 49.5
Cfa000249 Carpinus fangiana HOM05D004992 ORTHO05D006004 1.4e-15 86.3 110 48.2
Duzib192G0598 Durio zibethinus HOM05D004992 ORTHO05D006004 1.9e-15 85.9 108 48.1
TWI38G1979 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 3.2e-15 85.1 108 47.2
Haze_06774 Corylus avellana HOM05D003428 ORTHO05D004131 5.5e-15 84.3 110 47.3
Thecc.06G217500 Theobroma cacao HOM05D004992 ORTHO05D006004 1.2e-14 83.2 111 44.1
TWI38G1613 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 1.6e-14 82.8 108 45.4
ClCG01G022080 Citrullus lanatus HOM05D004992 ORTHO05D006004 2.7e-14 82.0 105 46.7
Glyma.17G015100 Glycine max HOM05D004992 ORTHO05D006004 2.7e-14 82.0 107 47.7
Lj4g0012462 Lotus japonicus HOM05D004992 ORTHO05D006004 2.7e-14 82.0 103 45.6
arahy.Tifrunner.gnm1.ann1.FJ4Y8F Arachis hypogaea HOM05D004992 ORTHO05D006004 3.5e-14 81.6 110 46.4
Prupe.4G023900 Prunus persica HOM05D004992 ORTHO05D006004 3.5e-14 81.6 113 47.8
arahy.Tifrunner.gnm1.ann1.9Z1Z9Z Arachis hypogaea HOM05D004992 ORTHO05D006004 6.0e-14 80.9 111 45.9
Phvul.006G151000 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 1.3e-13 79.7 107 45.8
Potri.011G000400 Populus trichocarpa HOM05D004992 ORTHO05D006004 1.8e-13 79.3 108 48.1
FAN25G3450 Fragaria x ananassa HOM05D004992 ORTHO05D006004 3.9e-13 78.2 108 46.3
MELO3C007381.2 Cucumis melo HOM05D004992 ORTHO05D006004 6.7e-13 77.4 101 46.5
FAN21G0406 Fragaria x ananassa HOM05D004992 ORTHO05D006004 6.7e-13 77.4 110 44.5
Lalb_Chr18g0056231 Lupinus albus HOM05D004992 ORTHO05D006004 6.7e-13 77.4 116 42.2
Manes.17G037200 Manihot esculenta HOM05D004992 ORTHO05D006004 6.7e-13 77.4 111 43.2
Sed0000784 Sechium edule HOM05D004992 ORTHO05D006004 6.7e-13 77.4 100 44.0
Oeu051218.1 Olea europaea HOM05D004992 ORTHO05D006004 8.7e-13 77.0 106 46.2
Phvul.003G077200 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 8.7e-13 77.0 107 44.9
VMungo0540G0931 Vigna mungo HOM05D004992 ORTHO05D006004 8.7e-13 77.0 107 44.9
AT4G21780 Arabidopsis thaliana HOM05D004992 ORTHO05D006004 1.1e-12 76.6 112 44.6
FvH4_3g02450 Fragaria vesca HOM05D004992 ORTHO05D006004 1.1e-12 76.6 110 44.5
Glyma.13G206400 Glycine max HOM05D004992 ORTHO05D006004 1.1e-12 76.6 109 44.0
arahy.Tifrunner.gnm1.ann1.PC5S43 Arachis hypogaea HOM05D004992 ORTHO05D006004 1.9e-12 75.9 110 42.7
CSS0017416 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 1.9e-12 75.9 116 43.1
CSS0025190 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 1.9e-12 75.9 109 45.9
CSS0030561 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 1.9e-12 75.9 109 45.9
Dinv13873 Davidia involucrata HOM05D004992 ORTHO05D006004 1.9e-12 75.9 106 48.1
Hma1.2p1_0091F.1_g046260 Hydrangea macrophylla HOM05D004992 ORTHO05D006004 1.9e-12 75.9 111 45.0
RcHm_v2.0_Chr5g0003701 Rosa chinensis HOM05D004992 ORTHO05D006004 1.9e-12 75.9 109 45.9
arahy.Tifrunner.gnm1.ann1.T879FL Arachis hypogaea HOM05D004992 ORTHO05D006004 2.5e-12 75.5 110 42.7
Glyma.07G259100 Glycine max HOM05D004992 ORTHO05D006004 3.3e-12 75.1 107 43.9
Sed0007059 Sechium edule HOM05D004992 ORTHO05D006004 4.3e-12 74.7 111 43.2
CANSAT56G2390 Cannabis sativa HOM05D004992 ORTHO05D006004 5.7e-12 74.3 116 42.2
COL.COLO4_31744 Corchorus olitorius HOM05D004992 ORTHO05D006004 5.7e-12 74.3 111 43.2
TAR624G0245 Trochodendron aralioides HOM05D004992 ORTHO05D006004 7.4e-12 73.9 105 48.6
MD10G1317900 Malus domestica HOM05D004992 ORTHO05D006004 9.7e-12 73.6 120 37.5
Manes.16G010000 Manihot esculenta HOM05D004992 ORTHO05D006004 9.7e-12 73.6 108 46.3
Sopen02g025060 Solanum pennellii HOM05D004992 ORTHO05D006004 9.7e-12 73.6 108 41.7
TPR.G37097 Trifolium pratense HOM05D004992 ORTHO05D006004 9.7e-12 73.6 98 43.9
AL7G32150 Arabidopsis lyrata HOM05D004992 ORTHO05D006004 1.3e-11 73.2 113 39.8
Eucgr.E04090 Eucalyptus grandis HOM05D004992 ORTHO05D006004 1.3e-11 73.2 103 48.5
Medtr2g022820 Medicago truncatula HOM05D004992 ORTHO05D006004 1.3e-11 73.2 103 40.8
Solyc02g080360.1 Solanum lycopersicum HOM05D004992 ORTHO05D006004 1.3e-11 73.2 108 41.7
VMungo1215G1625 Vigna mungo HOM05D004992 ORTHO05D006004 1.6e-11 72.8 101 43.6
arahy.Tifrunner.gnm1.ann1.Z4K8V6 Arachis hypogaea HOM05D004992 ORTHO05D006004 2.2e-11 72.4 110 41.8
CARHR228520 Cardamine hirsuta HOM05D004992 ORTHO05D006004 4.8e-11 71.2 113 38.1
Ca_00623_v3 Cicer arietinum L. HOM05D004992 ORTHO05D006004 6.3e-11 70.9 114 40.4
PGSC0003DMG400016488 Solanum tuberosum HOM05D004992 ORTHO05D006004 6.3e-11 70.9 109 40.4
Carub.0007s1962 Capsella rubella HOM05D004992 ORTHO05D006004 8.2e-11 70.5 115 41.7
Hma1.2p1_0813F.1_g222590 Hydrangea macrophylla HOM05D004992 ORTHO05D006004 8.2e-11 70.5 97 44.3
TPR.G37044 Trifolium pratense HOM05D004992 ORTHO05D006004 8.2e-11 70.5 98 42.9
Aa31LG6G3760 Aethionema arabicum HOM05D004992 ORTHO05D006004 1.1e-10 70.1 118 39.0
Nitab4.5_0010096g0060 Nicotiana tabacum HOM05D004992 ORTHO05D006004 1.1e-10 70.1 107 39.3
Thhalv10027254m.g Eutrema salsugineum HOM05D004992 ORTHO05D006004 2.4e-10 68.9 114 38.6
Lsat_1_v5_gn_9_94121 Lactuca sativa HOM05D004992 ORTHO05D006004 4.1e-10 68.2 99 46.5
PGR042G3122 Punica granatum HOM05D004992 ORTHO05D006004 4.1e-10 68.2 113 41.6
BcaNung02246 Brassica carinata HOM05D004992 ORTHO05D006004 6.9e-10 67.4 111 36.9
Cc09_g01920 Coffea canephora HOM05D004992 ORTHO05D006004 6.9e-10 67.4 108 41.7
Migut.M01366 Erythranthe guttata HOM05D004992 ORTHO05D006004 6.9e-10 67.4 102 47.1
THA.LOC104806295 Tarenaya hassleriana HOM05D004992 ORTHO05D006004 6.9e-10 67.4 105 41.0
MELO3C002469.2 Cucumis melo HOM05D004992 ORTHO05D006004 1.5e-09 66.2 108 37.0
Medtr4g131880 Medicago truncatula HOM05D004992 ORTHO05D006004 1.5e-09 66.2 103 43.7
Sp7g19950 Schrenkiella parvula HOM05D004992 ORTHO05D006004 2.6e-09 65.5 113 38.9
BraA01t01254Z Brassica rapa HOM05D004992 ORTHO05D006004 3.4e-09 65.1 114 36.8
Nn1g07103 Nelumbo nucifera HOM05D004992 ORTHO05D006004 3.4e-09 65.1 108 43.5
Atru.chr10.2180 Acer truncatum HOM05D004992 ORTHO05D006004 4.5e-09 64.7 72 52.8
ClCG03G004870 Citrullus lanatus HOM05D004992 ORTHO05D006004 4.5e-09 64.7 109 40.4
Lsat_1_v5_gn_7_17380 Lactuca sativa HOM05D004992 ORTHO05D006004 4.5e-09 64.7 114 36.0
Oeu037355.1 Olea europaea HOM05D004992 ORTHO05D006004 4.5e-09 64.7 110 40.9
A01p13110 Brassica napus HOM05D004992 ORTHO05D006004 5.9e-09 64.3 113 36.3
BcaC09g51203 Brassica carinata HOM05D004992 ORTHO05D006004 7.6e-09 63.9 114 36.8
C01p15800 Brassica napus HOM05D004992 ORTHO05D006004 7.6e-09 63.9 114 36.8
BolC1t01533H Brassica oleracea HOM05D004992 ORTHO05D006004 7.6e-09 63.9 114 36.8
CsaV3_1G010900 Cucumis sativus L. HOM05D004992 ORTHO05D006004 7.6e-09 63.9 108 37.0
TPR.G7639 Trifolium pratense HOM05D004992 ORTHO05D006004 1.3e-08 63.2 108 35.2
Duzib268G1102 Durio zibethinus HOM05D004992 ORTHO05D006004 1.7e-08 62.8 109 43.1
CsaV3_6G049140 Cucumis sativus L. HOM05D004992 ORTHO05D006004 2.9e-08 62.0 94 42.6
Migut.M01784 Erythranthe guttata HOM05D004992 ORTHO05D006004 5.0e-08 61.2 89 43.8
Nitab4.5_0010096g0020 Nicotiana tabacum HOM05D000001 ORTHO05D009485 5.0e-08 61.2 108 40.7
Potri.011G136500 Populus trichocarpa HOM05D004992 ORTHO05D006004 6.5e-08 60.8 106 43.4
Prupe.4G209300 Prunus persica HOM05D004992 ORTHO05D006004 1.1e-07 60.1 106 38.7
Thecc.07G043900 Theobroma cacao HOM05D004992 ORTHO05D006004 1.1e-07 60.1 109 42.2
Gorai.002G086600 Gossypium raimondii HOM05D004992 ORTHO05D006004 1.4e-07 59.7 103 43.7
Peaxi162Scf00262g00051 Petunia axillaris HOM05D004992 ORTHO05D006004 1.4e-07 59.7 107 34.6
Manes.03G126800 Manihot esculenta HOM05D004992 ORTHO05D006004 2.5e-07 58.9 108 38.9
EL10Ac8g20021 Beta vulgaris HOM05D004992 ORTHO05D006004 3.2e-07 58.5 125 37.6
Ciclev10009906m.g Citrus clementina HOM05D004992 ORTHO05D006004 3.2e-07 58.5 101 37.6
Gohir.A01G077800 Gossypium hirsutum HOM05D004992 ORTHO05D006004 3.2e-07 58.5 103 43.7
Rhsim06G0215300 Rhododendron simsii HOM05D004992 ORTHO05D006004 4.2e-07 58.2 100 42.0
Sabra11G0122600 Salix brachista HOM05D004992 ORTHO05D006004 4.2e-07 58.2 101 41.6
SGA_v2.0_scaffold7G03870 Striga asiatica HOM05D004992 ORTHO05D006004 4.2e-07 58.2 108 38.0
Sc17g0007220 Simmondsia chinensis HOM05D004992 ORTHO05D006004 5.5e-07 57.8 130 33.8
MSTRG.12965 Avicennia marina HOM05D004992 ORTHO05D006004 7.2e-07 57.4 85 47.1
Potri.001G421100 Populus trichocarpa HOM05D004992 ORTHO05D006004 9.3e-07 57.0 107 39.3
Gohir.D05G366700 Gossypium hirsutum HOM05D004992 ORTHO05D006004 1.2e-06 56.6 100 43.0
Gorai.009G425100 Gossypium raimondii HOM05D004992 ORTHO05D006004 1.2e-06 56.6 100 43.0
Rhsim04G0000900 Rhododendron simsii HOM05D004992 ORTHO05D006004 2.1e-06 55.8 104 40.4
Rhsim04G0002000 Rhododendron simsii HOM05D004992 ORTHO05D006004 2.1e-06 55.8 104 40.4
Eucgr.F03448 Eucalyptus grandis HOM05D004992 ORTHO05D006004 2.7e-06 55.5 102 37.3
PSO675G1893 Papaver somniferum HOM05D004992 ORTHO05D006004 3.6e-06 55.1 107 36.4
Phvul.008G265000 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 3.6e-06 55.1 102 32.4
Sed0025492 Sechium edule HOM05D004992 ORTHO05D006004 6.1e-06 54.3 111 32.4


User provided reference genes

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