Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.L03492 Eucalyptus grandis HOM05D001920 ORTHO05D005408 1.1e-84 316.6 161 100.0
Eucgr.C03063 Eucalyptus grandis HOM05D001920 ORTHO05D005408 3.3e-73 278.5 148 97.3
Ciclev10007867m.g Citrus clementina HOM05D001920 ORTHO05D005408 1.8e-42 176.4 147 60.5
Duzib187G1306 Durio zibethinus HOM05D001920 ORTHO05D005408 2.3e-42 176.0 149 61.7
PGR044G1731 Punica granatum HOM05D001920 ORTHO05D005408 8.7e-42 174.1 138 64.5
Hma1.2p1_0196F.1_g084800 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 5.6e-41 171.4 147 60.5
QL02p000680 Quercus lobata HOM05D001920 ORTHO05D005408 1.6e-40 169.9 138 59.4
Thecc.09G057700 Theobroma cacao HOM05D001920 ORTHO05D005408 2.1e-40 169.5 149 59.7
CiPaw.15G036600 Carya illinoinensis HOM05D001920 ORTHO05D005408 1.5e-38 163.3 138 58.0
MELO3C016885.2 Cucumis melo HOM05D001920 ORTHO05D005408 1.5e-38 163.3 125 62.4
Cpa.g.sc222.19 Carica papaya HOM05D001920 ORTHO05D005408 2.0e-38 162.9 148 58.1
CSS0047067 Camellia sinensis var. sinensis HOM05D001920 ORTHO05D005408 3.4e-38 162.2 139 59.0
Haze_18151 Corylus avellana HOM05D001920 ORTHO05D005408 3.4e-38 162.2 146 56.2
CANSAT11G1997 Cannabis sativa HOM05D001920 ORTHO05D005408 4.5e-38 161.8 139 60.4
ClCG05G018020 Citrullus lanatus HOM05D001920 ORTHO05D005408 5.8e-38 161.4 133 60.2
Lalb_Chr22g0356171 Lupinus albus HOM05D001920 ORTHO05D005408 1.0e-37 160.6 148 55.4
CsaV3_4G035800 Cucumis sativus L. HOM05D001920 ORTHO05D005408 1.3e-37 160.2 134 59.7
Sed0005880 Sechium edule HOM05D001920 ORTHO05D005408 2.2e-37 159.5 139 56.8
vmacro07770 Vaccinium macrocarpon HOM05D001920 ORTHO05D005408 3.8e-37 158.7 140 57.9
Gohir.D08G268800 Gossypium hirsutum HOM05D001920 ORTHO05D005408 4.9e-37 158.3 148 57.4
Gorai.004G286500 Gossypium raimondii HOM05D001920 ORTHO05D005408 4.9e-37 158.3 148 57.4
FAN27G2437 Fragaria x ananassa HOM05D001920 ORTHO05D005408 6.5e-37 157.9 141 57.4
Gohir.A08G247700 Gossypium hirsutum HOM05D001920 ORTHO05D005408 1.1e-36 157.1 150 56.7
Sed0005137 Sechium edule HOM05D001920 ORTHO05D005408 1.1e-36 157.1 144 54.2
Sabra06G0174400 Salix brachista HOM05D001920 ORTHO05D005408 3.2e-36 155.6 125 61.6
COL.COLO4_21094 Corchorus olitorius HOM05D001920 ORTHO05D005408 4.2e-36 155.2 145 55.9
FvH4_2g31510 Fragaria vesca HOM05D001920 ORTHO05D005408 4.2e-36 155.2 143 55.2
FAN24G1332 Fragaria x ananassa HOM05D001920 ORTHO05D005408 4.2e-36 155.2 143 55.2
AUR62031243 Chenopodium quinoa HOM05D001920 ORTHO05D005408 5.5e-36 154.8 138 58.7
Dinv12437 Davidia involucrata HOM05D001920 ORTHO05D005408 5.5e-36 154.8 116 68.1
Atru.chr7.1932 Acer truncatum HOM05D001920 ORTHO05D005408 7.1e-36 154.5 137 57.7
Cc08_g10930 Coffea canephora HOM05D001920 ORTHO05D005408 9.3e-36 154.1 143 53.8
Actinidia29326 Actinidia chinensis HOM05D001920 ORTHO05D005408 1.2e-35 153.7 149 55.0
RhsimUnG0209800 Rhododendron simsii HOM05D001920 ORTHO05D005408 1.2e-35 153.7 140 57.9
Actinidia03557 Actinidia chinensis HOM05D001920 ORTHO05D005408 2.7e-35 152.5 134 57.5
FAN20G0594 Fragaria x ananassa HOM05D001920 ORTHO05D005408 2.7e-35 152.5 140 55.7
Lj7A258G43 Lonicera japonica HOM05D001920 ORTHO05D005408 2.7e-35 152.5 137 56.9
Oeu003998.1 Olea europaea HOM05D001920 ORTHO05D005408 2.7e-35 152.5 129 57.4
Hma1.2p1_0077F.1_g039730 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 3.5e-35 152.1 135 58.5
TWI63G1659 Tripterygium wilfordii HOM05D001920 ORTHO05D005408 4.6e-35 151.8 147 53.7
EL10Ac8g19267 Beta vulgaris HOM05D001920 ORTHO05D005408 6.0e-35 151.4 147 53.7
FAN15G2558 Fragaria x ananassa HOM05D001920 ORTHO05D005408 7.9e-35 151.0 143 54.5
RcHm_v2.0_Chr6g0311281 Rosa chinensis HOM05D001920 ORTHO05D005408 1.0e-34 150.6 162 50.0
Ca_03647_v3 Cicer arietinum L. HOM05D001920 ORTHO05D005408 1.3e-34 150.2 147 51.7
Nitab4.5_0000707g0110 Nicotiana tabacum HOM05D001920 ORTHO05D005408 1.3e-34 150.2 145 53.8
Potri.006G225500 Populus trichocarpa HOM05D001920 ORTHO05D005408 3.0e-34 149.1 137 54.7
TAR626G1364 Trochodendron aralioides HOM05D001920 ORTHO05D005408 3.0e-34 149.1 134 55.2
Nitab4.5_0004053g0020 Nicotiana tabacum HOM05D001920 ORTHO05D005408 3.9e-34 148.7 139 54.0
RhsimUnG0018300 Rhododendron simsii HOM05D001920 ORTHO05D005408 3.9e-34 148.7 140 56.4
HanXRQChr10g0309741 Helianthus annuus HOM05D001920 ORTHO05D005408 5.1e-34 148.3 137 57.7
ECA234G0290 Erigeron canadensis HOM05D001920 ORTHO05D005408 6.7e-34 147.9 145 52.4
MBI05_g36626_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 6.7e-34 147.9 120 61.7
MD15G1055600 Malus domestica HOM05D001920 ORTHO05D005408 6.7e-34 147.9 148 53.4
VMungo0251G2102 Vigna mungo HOM05D001920 ORTHO05D005408 6.7e-34 147.9 114 63.2
Migut.D00410 Erythranthe guttata HOM05D001920 ORTHO05D005408 8.7e-34 147.5 148 52.0
Peaxi162Scf00694g00218 Petunia axillaris HOM05D001920 ORTHO05D005408 8.7e-34 147.5 145 53.1
MD08G1065800 Malus domestica HOM05D001920 ORTHO05D005408 1.1e-33 147.1 143 54.5
arahy.Tifrunner.gnm1.ann1.UJN8CA Arachis hypogaea HOM05D001920 ORTHO05D005408 1.5e-33 146.7 136 57.4
AUR62027456 Chenopodium quinoa HOM05D001920 ORTHO05D005408 1.9e-33 146.4 137 57.7
Prupe.1G408800 Prunus persica HOM05D001920 ORTHO05D005408 1.9e-33 146.4 92 73.9
Hund19436 Selenicereus undatus HOM05D001920 ORTHO05D005408 1.9e-33 146.4 136 55.1
Lsat_1_v5_gn_4_73880 Lactuca sativa HOM05D001920 ORTHO05D005408 2.5e-33 146.0 134 58.2
Phvul.003G267800 Phaseolus vulgaris HOM05D001920 ORTHO05D005408 2.5e-33 146.0 114 62.3
GSVIVG01035413001 Vitis vinifera HOM05D001920 ORTHO05D005408 3.3e-33 145.6 104 68.3
Psat4g103240 Pisum sativum HOM05D001920 ORTHO05D005408 4.3e-33 145.2 149 53.0
Ah.09g228460 Amaranthus hybridus HOM05D001920 ORTHO05D005408 5.7e-33 144.8 147 52.4
SalBow4G2367 Salvia bowleyana HOM05D001920 ORTHO05D005408 5.7e-33 144.8 147 49.7
Cfa017979 Carpinus fangiana HOM05D001920 ORTHO05D005408 9.7e-33 144.1 132 53.8
Medtr8g074590 Medicago truncatula HOM05D001920 ORTHO05D005408 9.7e-33 144.1 126 56.3
Aqoxy6G00323 Aquilegia oxysepala HOM05D001920 ORTHO05D005408 1.3e-32 143.7 134 53.7
Glyma.16G120600 Glycine max HOM05D001920 ORTHO05D005408 1.6e-32 143.3 149 52.3
HanXRQChr12g0359101 Helianthus annuus HOM05D001920 ORTHO05D005408 1.6e-32 143.3 137 55.5
TWI34G1596 Tripterygium wilfordii HOM05D001920 ORTHO05D005408 1.6e-32 143.3 97 69.1
DCAR_003139 Daucus carota HOM05D001920 ORTHO05D005408 2.2e-32 142.9 137 53.3
arahy.Tifrunner.gnm1.ann1.14SSX1 Arachis hypogaea HOM05D001920 ORTHO05D005408 2.8e-32 142.5 121 62.0
PGSC0003DMG400006851 Solanum tuberosum HOM05D001920 ORTHO05D005408 3.7e-32 142.1 139 52.5
Manes.16G082600 Manihot esculenta HOM05D001920 ORTHO05D005408 8.2e-32 141.0 98 66.3
Glyma.02G043400 Glycine max HOM05D001920 ORTHO05D005408 1.4e-31 140.2 117 59.0
PSO210G2773 Papaver somniferum HOM05D001920 ORTHO05D005408 1.4e-31 140.2 159 48.4
THA.LOC104799157 Tarenaya hassleriana HOM05D001920 ORTHO05D005408 3.1e-31 139.0 137 54.7
CAN.G219.68 Capsicum annuum HOM05D001920 ORTHO05D005408 9.0e-31 137.5 113 59.3
Lj4g0027878 Lotus japonicus HOM05D001920 ORTHO05D005408 1.2e-30 137.1 117 59.0
arahy.Tifrunner.gnm1.ann1.9L6JUF Arachis hypogaea HOM05D001920 ORTHO05D005408 2.6e-30 136.0 136 54.4
Carub.0006s1052 Capsella rubella HOM05D001920 ORTHO05D005408 2.6e-30 136.0 136 52.9
CDE05G1481 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 5.9e-30 134.8 119 58.0
PSO210G7360 Papaver somniferum HOM05D001920 ORTHO05D005408 5.9e-30 134.8 144 50.0
CDE05G0360 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 7.6e-30 134.4 120 58.3
Solyc01g087650.4 Solanum lycopersicum HOM05D001920 ORTHO05D005408 7.6e-30 134.4 116 60.3
A02p01310 Brassica napus HOM05D001920 ORTHO05D005408 1.3e-29 133.7 137 52.6
BraA02t05109Z Brassica rapa HOM05D001920 ORTHO05D005408 1.3e-29 133.7 137 52.6
BcaC03g13404 Brassica carinata HOM05D001920 ORTHO05D005408 1.7e-29 133.3 137 52.6
C02p05530 Brassica napus HOM05D001920 ORTHO05D005408 1.7e-29 133.3 137 52.6
BolC2t06498H Brassica oleracea HOM05D001920 ORTHO05D005408 1.7e-29 133.3 137 52.6
CARHR201150 Cardamine hirsuta HOM05D001920 ORTHO05D005408 1.7e-29 133.3 136 51.5
Sp6g31610 Schrenkiella parvula HOM05D001920 ORTHO05D005408 2.2e-29 132.9 129 52.7
AL6G22770 Arabidopsis lyrata HOM05D001920 ORTHO05D005408 2.9e-29 132.5 136 51.5
MSTRG.14078 Avicennia marina HOM05D001920 ORTHO05D005408 2.9e-29 132.5 122 58.2
Sopen01g034610 Solanum pennellii HOM05D001920 ORTHO05D005408 2.9e-29 132.5 141 51.8
SGA_v2.0_scaffold169G38703 Striga asiatica HOM05D001920 ORTHO05D005408 2.9e-29 132.5 150 49.3
A03p05350 Brassica napus HOM05D001920 ORTHO05D005408 3.8e-29 132.1 137 52.6
BraA03t09873Z Brassica rapa HOM05D001920 ORTHO05D005408 3.8e-29 132.1 137 52.6
BcaNung02634 Brassica carinata HOM05D001920 ORTHO05D005408 6.5e-29 131.3 136 52.2
BolC3t13123H Brassica oleracea HOM05D001920 ORTHO05D005408 6.5e-29 131.3 137 52.6
Aa31LG3G15240 Aethionema arabicum HOM05D001920 ORTHO05D005408 8.5e-29 131.0 90 67.8
Sc23g0005750 Simmondsia chinensis HOM05D001920 ORTHO05D005408 8.5e-29 131.0 138 47.8
Thhalv10013117m.g Eutrema salsugineum HOM05D001920 ORTHO05D005408 1.1e-28 130.6 137 51.8
BcaB01g05437 Brassica carinata HOM05D001920 ORTHO05D005408 1.4e-28 130.2 137 52.6
MBI18_g38862_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 1.4e-28 130.2 141 49.6
unitig_8.g5056 Utricularia gibba HOM05D001920 ORTHO05D005408 1.4e-28 130.2 134 47.8
arahy.Tifrunner.gnm1.ann1.RZJX0Q Arachis hypogaea HOM05D001920 ORTHO05D005408 3.2e-28 129.0 136 53.7
C03p06150 Brassica napus HOM05D001920 ORTHO05D005408 4.2e-28 128.6 137 51.1
HPP92_005529 Vanilla planifolia HOM05D001920 ORTHO05D005408 1.6e-27 126.7 126 50.8
RcHm_v2.0_Chr4g0442191 Rosa chinensis HOM05D001920 ORTHO05D005408 5.7e-25 118.2 100 62.0
Migut.E01586 Erythranthe guttata HOM05D001920 ORTHO05D005408 1.8e-23 113.2 154 45.5
FvH4_4g33140 Fragaria vesca HOM05D001920 ORTHO05D005408 1.8e-23 113.2 95 62.1
FAN12G3829 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.8e-23 113.2 95 62.1
FAN22G0219 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.8e-23 113.2 95 62.1
Os12g0538300 Oryza sativa ssp. japonica HOM05D001920 ORTHO05D005408 4.1e-23 112.1 89 57.3
ATR0686G037 Amborella trichopoda HOM05D001920 ORTHO05D005408 9.1e-23 110.9 143 47.6
FAN07G1923 Fragaria x ananassa HOM05D001920 ORTHO05D005408 2.0e-22 109.8 95 61.1
Zm00001eb006920 Zea mays HOM05D001920 ORTHO05D005408 2.6e-22 109.4 89 57.3
Zm00001eb401360 Zea mays HOM05D001920 ORTHO05D005408 2.6e-22 109.4 109 53.2
FAN12G2252 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.1e-20 104.0 86 61.6
Mapoly0087s0038 Marchantia polymorpha HOM05D001920 ORTHO05D005408 2.3e-18 96.3 108 47.2
Pp3c10_11790 Physcomitrium patens HOM05D001920 ORTHO05D005408 9.7e-17 90.9 83 51.8
Gohir.D05G042133 Gossypium hirsutum HOM05D001920 ORTHO05D005408 2.8e-16 89.4 135 42.2
TPR.G14973 Trifolium pratense HOM05D001920 ORTHO05D005408 2.8e-16 89.4 90 44.4
CBR_g34170 Chara braunii HOM05D001920 ORTHO05D005408 3.7e-16 89.0 87 47.1
Gorai.009G043000 Gossypium raimondii HOM05D001920 ORTHO05D005408 4.8e-16 88.6 135 42.2
SMO356G0672 Selaginella moellendorffii HOM05D001920 ORTHO05D005408 9.1e-15 84.3 119 41.2
BcaNung02635 Brassica carinata HOM05D001920 ORTHO05D005408 1.2e-14 84.0 59 67.8
Lj7C264G4 Lonicera japonica HOM05D001920 ORTHO05D005408 2.6e-14 82.8 137 38.0
Pp3c2_14420 Physcomitrium patens HOM05D001920 ORTHO05D005408 2.6e-14 82.8 68 55.9
Oeu004630.1 Olea europaea HOM05D001920 ORTHO05D005408 8.5e-13 77.8 87 46.0
TPR.G748 Trifolium pratense HOM05D001920 ORTHO05D005408 4.2e-12 75.5 55 67.3
Nn8g38775 Nelumbo nucifera HOM05D001920 ORTHO05D005408 9.4e-12 74.3 53 67.9
MSTRG.25967 Avicennia marina HOM05D001920 ORTHO05D005408 1.6e-11 73.6 122 38.5
Lj7A259T19 Lonicera japonica HOM05D001920 ORTHO05D235283 2.3e-10 69.7 143 34.3
AT5G11980 Arabidopsis thaliana HOM05D001920 ORTHO05D005408 5.2e-10 68.6 55 60.0
SHI18715 Sapria himalayana HOM05D001920 ORTHO05D005408 2.6e-09 66.2 47 63.8
AagrBONN_evm.TU.Sc2ySwM_228.4615 Anthoceros agrestis HOM05D001920 ORTHO05D005408 1.7e-08 63.5 48 62.5
ATR0009G024 Amborella trichopoda HOM05D001920 ORTHO05D005408 2.8e-08 62.8 75 46.7


User provided reference genes

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