Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.L03482 Eucalyptus grandis HOM05D004546 ORTHO05D005419 1.4e-119 433.0 222 100.0
Eucgr.G00575 Eucalyptus grandis HOM05D004546 ORTHO05D005419 3.1e-106 388.7 219 92.2
PGR042G1236 Punica granatum HOM05D004546 ORTHO05D005419 6.3e-75 284.6 206 69.9
CiPaw.05G045000 Carya illinoinensis HOM05D004546 ORTHO05D005419 7.2e-71 271.2 221 62.0
Haze_01703 Corylus avellana HOM05D004546 ORTHO05D005419 7.2e-71 271.2 221 62.0
Cfa005513 Carpinus fangiana HOM05D004546 ORTHO05D005419 1.0e-69 267.3 221 61.1
Sabra17G0029200 Salix brachista HOM05D004546 ORTHO05D005419 1.8e-69 266.5 221 61.5
Potri.017G043000 Populus trichocarpa HOM05D004546 ORTHO05D005419 3.0e-69 265.8 221 61.5
Potri.007G116200 Populus trichocarpa HOM05D004546 ORTHO05D005419 5.7e-68 261.5 221 61.5
Manes.10G066500 Manihot esculenta HOM05D004546 ORTHO05D005419 9.8e-68 260.8 221 59.7
Thecc.05G227600 Theobroma cacao HOM05D004546 ORTHO05D005419 1.8e-66 256.5 221 61.1
Hma1.2p1_1482F.1_g286200 Hydrangea macrophylla HOM05D004546 ORTHO05D005419 7.0e-66 254.6 220 59.1
Rhsim09G0016100 Rhododendron simsii HOM05D004546 ORTHO05D005419 7.0e-66 254.6 220 56.4
Ciclev10015244m.g Citrus clementina HOM05D004546 ORTHO05D005419 1.2e-65 253.8 221 61.1
vmacro01757 Vaccinium macrocarpon HOM05D004546 ORTHO05D005419 3.5e-65 252.3 220 59.1
Prupe.1G570900 Prunus persica HOM05D004546 ORTHO05D005419 1.0e-64 250.8 221 57.5
Atru.chr8.1488 Acer truncatum HOM05D004546 ORTHO05D005419 1.3e-64 250.4 221 59.7
Sabra07G0094500 Salix brachista HOM05D004546 ORTHO05D005419 1.3e-64 250.4 223 59.6
CSS0049092 Camellia sinensis var. sinensis HOM05D004546 ORTHO05D005419 1.7e-64 250.0 220 56.4
QL02p098920 Quercus lobata HOM05D004546 ORTHO05D005419 1.7e-64 250.0 222 59.0
CANSAT54G1257 Cannabis sativa HOM05D004546 ORTHO05D005419 2.2e-64 249.6 221 60.2
MD15G1425300 Malus domestica HOM05D004546 ORTHO05D005419 3.8e-64 248.8 221 58.8
Cpa.g.sc8.264 Carica papaya HOM05D004546 ORTHO05D005419 1.1e-63 247.3 221 58.8
ClCG03G000010 Citrullus lanatus HOM05D004546 ORTHO05D005419 1.5e-63 246.9 221 57.9
MD08G1233000 Malus domestica HOM05D004546 ORTHO05D005419 1.9e-63 246.5 221 57.5
GSVIVG01035964001 Vitis vinifera HOM05D004546 ORTHO05D005419 1.9e-63 246.5 220 59.1
Rhsim11G0128800 Rhododendron simsii HOM05D004546 ORTHO05D005419 2.5e-63 246.1 233 52.4
Duzib177G0829 Durio zibethinus HOM05D004546 ORTHO05D005419 3.2e-63 245.7 221 58.8
TWI59G0103 Tripterygium wilfordii HOM05D004546 ORTHO05D005419 7.2e-63 244.6 221 56.1
Sed0013794 Sechium edule HOM05D004546 ORTHO05D005419 3.6e-62 242.3 221 56.6
CsaV3_5G025650 Cucumis sativus L. HOM05D004546 ORTHO05D005419 1.8e-61 240.0 221 56.6
GSVIVG01022895001 Vitis vinifera HOM05D004546 ORTHO05D005419 1.5e-60 236.9 210 59.5
CAN.G1330.18 Capsicum annuum HOM05D004546 ORTHO05D005419 3.4e-60 235.7 220 53.2
PGSC0003DMG400010002 Solanum tuberosum HOM05D004546 ORTHO05D005419 4.4e-60 235.3 220 52.7
THA.LOC104809617 Tarenaya hassleriana HOM05D004546 ORTHO05D005419 1.3e-59 233.8 221 54.8
Nitab4.5_0000753g0130 Nicotiana tabacum HOM05D004546 ORTHO05D005419 1.7e-59 233.4 218 54.1
Nitab4.5_0003652g0050 Nicotiana tabacum HOM05D004546 ORTHO05D005419 1.7e-59 233.4 218 53.7
Lalb_Chr12g0204461 Lupinus albus HOM05D004546 ORTHO05D005419 2.2e-59 233.0 222 56.8
Oeu033122.2 Olea europaea HOM05D004546 ORTHO05D005419 2.8e-59 232.6 221 54.3
Solyc10g019040.2 Solanum lycopersicum HOM05D004546 ORTHO05D005419 8.3e-59 231.1 220 52.3
Sopen10g008970 Solanum pennellii HOM05D004546 ORTHO05D005419 8.3e-59 231.1 220 52.3
CARHR052070 Cardamine hirsuta HOM05D004546 ORTHO05D005419 5.4e-58 228.4 221 52.5
COL.COLO4_13071 Corchorus olitorius HOM05D004546 ORTHO05D005419 2.7e-57 226.1 207 58.9
TAR628G0514 Trochodendron aralioides HOM05D004546 ORTHO05D005419 5.9e-57 224.9 219 52.5
Aa31LG2G9580 Aethionema arabicum HOM05D004640 ORTHO05D005489 1.3e-56 223.8 221 52.0
Dinv24291 Davidia involucrata HOM05D004546 ORTHO05D005419 1.1e-55 220.7 221 52.0
Sp2g03510 Schrenkiella parvula HOM05D004546 ORTHO05D005419 1.5e-55 220.3 221 52.0
RcHm_v2.0_Chr7g0222021 Rosa chinensis HOM05D004546 ORTHO05D005419 4.3e-55 218.8 220 51.4
ECA234G1828 Erigeron canadensis HOM05D004546 ORTHO05D005419 5.6e-55 218.4 221 50.2
AT1G61000 Arabidopsis thaliana HOM05D004546 ORTHO05D005419 7.3e-55 218.0 221 51.1
BolC4t24246H Brassica oleracea HOM05D004546 ORTHO05D005419 7.3e-55 218.0 221 51.6
SHI16664 Sapria himalayana HOM05D004546 ORTHO05D005419 7.3e-55 218.0 223 49.8
Lj5A252T47 Lonicera japonica HOM05D004546 ORTHO05D005419 3.6e-54 215.7 220 52.3
Migut.B00830 Erythranthe guttata HOM05D004546 ORTHO05D005419 6.1e-54 214.9 221 50.2
DCAR_006706 Daucus carota HOM05D004546 ORTHO05D005419 1.4e-53 213.8 220 49.5
Carub.0002s0420 Capsella rubella HOM05D004546 ORTHO05D005419 8.9e-53 211.1 221 49.3
Glyma.05G169000 Glycine max HOM05D004546 ORTHO05D005419 7.5e-52 208.0 221 50.2
Gohir.D07G234200 Gossypium hirsutum HOM05D004546 ORTHO05D005419 6.4e-51 204.9 181 59.7
Lj4g0018170 Lotus japonicus HOM05D004546 ORTHO05D005419 8.3e-51 204.5 223 51.1
BcaC02g10598 Brassica carinata HOM05D004546 ORTHO05D005419 1.1e-50 204.1 246 46.3
C03p25600 Brassica napus HOM05D004546 ORTHO05D005419 1.1e-50 204.1 221 48.4
C04p25630 Brassica napus HOM05D004546 ORTHO05D005419 1.1e-50 204.1 246 46.3
BolC3t14948H Brassica oleracea HOM05D004546 ORTHO05D005419 1.1e-50 204.1 221 48.4
Gohir.A07G227000 Gossypium hirsutum HOM05D004546 ORTHO05D005419 1.8e-50 203.4 181 59.1
Gohir.D06G191600 Gossypium hirsutum HOM05D004546 ORTHO05D005419 1.8e-50 203.4 181 59.1
Gorai.001G269700 Gossypium raimondii HOM05D004546 ORTHO05D005419 1.8e-50 203.4 221 51.1
Gorai.010G224800 Gossypium raimondii HOM05D004546 ORTHO05D005419 1.8e-50 203.4 181 59.1
Rhsim09G0048700 Rhododendron simsii HOM05D004546 ORTHO05D005419 2.4e-50 203.0 157 62.4
Phvul.002G249700 Phaseolus vulgaris HOM05D004546 ORTHO05D005419 4.1e-50 202.2 220 50.5
Gohir.A06G184800 Gossypium hirsutum HOM05D004546 ORTHO05D005419 5.4e-50 201.8 181 58.6
Hund15499 Selenicereus undatus HOM05D004546 ORTHO05D005419 5.4e-50 201.8 214 51.4
PSO210G6794 Papaver somniferum HOM05D004546 ORTHO05D005419 7.0e-50 201.4 219 47.5
A03p21620 Brassica napus HOM05D004546 ORTHO05D005419 9.2e-50 201.1 221 48.0
BraA03t11397Z Brassica rapa HOM05D004546 ORTHO05D005419 9.2e-50 201.1 221 48.0
Peaxi162Scf00152g01427 Petunia axillaris HOM05D004546 ORTHO05D005419 1.6e-49 200.3 219 49.8
VMungo0251G0767 Vigna mungo HOM05D004546 ORTHO05D005419 3.5e-49 199.1 216 50.9
MSTRG.16518 Avicennia marina HOM05D004546 ORTHO05D005419 7.8e-49 198.0 220 49.1
PSO210G7371 Papaver somniferum HOM05D004546 ORTHO05D005419 1.0e-48 197.6 219 46.6
Sc11g0004500 Simmondsia chinensis HOM05D004546 ORTHO05D005419 1.0e-48 197.6 220 44.5
Thhalv10023463m.g Eutrema salsugineum HOM05D004546 ORTHO05D005419 3.0e-48 196.1 221 46.6
FAN02G2941 Fragaria x ananassa HOM05D004546 ORTHO05D005419 3.9e-48 195.7 220 46.8
Lsat_1_v5_gn_5_105520 Lactuca sativa HOM05D004546 ORTHO05D005419 3.9e-48 195.7 186 52.2
VMungo0251G0798 Vigna mungo HOM05D004546 ORTHO05D005419 6.6e-48 194.9 248 44.8
Aqoxy6G00209 Aquilegia oxysepala HOM05D004546 ORTHO05D005419 1.5e-47 193.7 219 46.1
AUR62014224 Chenopodium quinoa HOM05D004546 ORTHO05D005419 2.5e-47 193.0 218 46.3
FAN05G4088 Fragaria x ananassa HOM05D004546 ORTHO05D005419 2.5e-47 193.0 220 45.9
EL10Ac2g02703 Beta vulgaris HOM05D004546 ORTHO05D005419 4.3e-47 192.2 220 46.8
AUR62041118 Chenopodium quinoa HOM05D004546 ORTHO05D005419 4.3e-47 192.2 218 46.3
RcHm_v2.0_Chr1g0336301 Rosa chinensis HOM05D004546 ORTHO05D005419 7.3e-47 191.4 220 46.8
TPR.G28353 Trifolium pratense HOM05D004546 ORTHO05D005419 2.1e-46 189.9 224 47.3
FvH4_6g25020 Fragaria vesca HOM05D004546 ORTHO05D005419 2.8e-46 189.5 220 44.5
Rhsim09G0048900 Rhododendron simsii HOM05D004546 ORTHO05D005419 1.8e-45 186.8 312 37.2
Actinidia00204 Actinidia chinensis HOM05D004546 ORTHO05D005419 2.3e-45 186.4 180 53.3
FAN14G0315 Fragaria x ananassa HOM05D004546 ORTHO05D005419 2.3e-45 186.4 225 44.4
HanXRQChr10g0290511 Helianthus annuus HOM05D004546 ORTHO05D005419 2.3e-45 186.4 187 52.4
COL.COLO4_05853 Corchorus olitorius HOM05D004546 ORTHO05D005294 5.2e-45 185.3 221 50.2
Atru.chr13.2649 Acer truncatum HOM05D004546 ORTHO05D005419 6.8e-45 184.9 139 67.6
COL.COLO4_10577 Corchorus olitorius HOM05D004546 ORTHO05D005419 2.6e-44 183.0 221 49.8
Medtr4g049650 Medicago truncatula HOM05D004546 ORTHO05D005419 3.4e-44 182.6 224 46.4
TPR.G23101 Trifolium pratense HOM05D004546 ORTHO05D005419 1.7e-43 180.3 221 47.1
Cc02_g22580 Coffea canephora HOM05D004546 ORTHO05D005419 8.3e-43 177.9 210 43.3
FvH4_7g06682 Fragaria vesca HOM05D004546 ORTHO05D005419 1.2e-41 174.1 210 46.2
Medtr8g088840 Medicago truncatula HOM05D004546 ORTHO05D005419 1.2e-41 174.1 224 46.0
Ah.14g086060 Amaranthus hybridus HOM05D004546 ORTHO05D005419 1.6e-41 173.7 213 43.2
FAN06G4932 Fragaria x ananassa HOM05D004546 ORTHO05D005419 2.7e-41 172.9 210 46.2
arahy.Tifrunner.gnm1.ann1.QA5S84 Arachis hypogaea HOM05D004546 ORTHO05D005419 3.0e-40 169.5 222 43.2
C05p50930 Brassica napus HOM05D004546 ORTHO05D005419 3.0e-40 169.5 208 46.2
arahy.Tifrunner.gnm1.ann1.SB4BQ5 Arachis hypogaea HOM05D004546 ORTHO05D005419 6.6e-40 168.3 222 42.8
Carub.0002s0419 Capsella rubella HOM05D004546 ORTHO05D005419 1.5e-39 167.2 218 44.0
SGA_v2.0_scaffold110G31325 Striga asiatica HOM05D004546 ORTHO05D005419 4.3e-39 165.6 185 47.0
Ca_17808_v3 Cicer arietinum L. HOM05D004546 ORTHO05D005419 5.6e-39 165.2 204 46.1
TPR.G38758 Trifolium pratense HOM05D004546 ORTHO05D005419 4.7e-38 162.2 223 42.2
FAN03G2280 Fragaria x ananassa HOM05D004546 ORTHO05D005419 6.2e-38 161.8 207 44.4
Medtr8g088800 Medicago truncatula HOM05D004546 ORTHO05D005419 6.8e-37 158.3 191 48.2
Psat7g062000 Pisum sativum HOM05D004546 ORTHO05D005419 8.9e-37 157.9 219 41.6
Lsat_1_v5_gn_8_80961 Lactuca sativa HOM05D004546 ORTHO05D005419 5.8e-36 155.2 157 49.0
Atru.chr4.610 Acer truncatum HOM05D004546 ORTHO05D005419 3.9e-32 142.5 205 42.0
Peaxi162Scf00152g01529 Petunia axillaris HOM05D004546 ORTHO05D005419 1.2e-30 137.5 219 40.6
TPR.G37878 Trifolium pratense HOM05D004546 ORTHO05D005419 1.8e-29 133.7 148 51.4
CDE08G0494 Ceratophyllum demersum HOM05D004546 ORTHO05D005419 2.2e-27 126.7 149 40.9
HPP92_000323 Vanilla planifolia HOM05D004546 ORTHO05D005419 2.2e-27 126.7 220 34.1
Nn1g08777 Nelumbo nucifera HOM05D004546 ORTHO05D005419 9.2e-26 121.3 131 48.1
Os08g0163100 Oryza sativa ssp. japonica HOM05D004546 ORTHO05D005419 1.8e-21 107.1 224 30.8
Os03g0577100 Oryza sativa ssp. japonica HOM05D004546 ORTHO05D005419 7.6e-20 101.7 199 30.7
Rhsim09G0049000 Rhododendron simsii HOM05D004546 ORTHO05D005419 2.2e-19 100.1 98 48.0
TPR.G37996 Trifolium pratense HOM05D004546 ORTHO05D005419 4.9e-19 99.0 155 40.0
ATR0177G064 Amborella trichopoda HOM05D004546 ORTHO05D005419 1.1e-18 97.8 181 32.0
MD08G1232500 Malus domestica HOM05D004546 ORTHO05D005419 3.2e-18 96.3 98 51.0
Rhsim09G0048500 Rhododendron simsii HOM05D004546 ORTHO05D005419 5.4e-18 95.5 178 37.1
Zm00001eb064460 Zea mays HOM05D004546 ORTHO05D005419 4.6e-17 92.4 192 28.1
RhsimUnG0234900 Rhododendron simsii HOM05D004546 ORTHO05D005419 6.0e-17 92.0 66 57.6
AagrBONN_evm.TU.Sc2ySwM_117.2656 Anthoceros agrestis HOM05D004546 ORTHO05D005419 7.3e-15 85.1 215 28.4
unitig_8.g2954 Utricularia gibba HOM05D004546 ORTHO05D005419 1.5e-12 77.4 202 30.2
AL2G15450 Arabidopsis lyrata HOM05D004546 ORTHO05D005419 9.9e-12 74.7 89 43.8
TPR.G31804 Trifolium pratense HOM05D004546 ORTHO05D005419 4.9e-11 72.4 56 64.3
FAN10G1533 Fragaria x ananassa HOM05D004546 ORTHO05D005419 3.5e-09 66.2 137 33.6
Aqoxy7G01614 Aquilegia oxysepala HOM05D004546 ORTHO05D005419 4.6e-09 65.9 139 26.6
MBI17_g42496_MAGBIO Magnolia biondii HOM05D004546 ORTHO05D005419 3.0e-08 63.2 75 41.3
TPR.G7268 Trifolium pratense HOM05D004546 ORTHO05D005419 6.7e-08 62.0 46 67.4
Mapoly0004s0096 Marchantia polymorpha HOM05D004546 ORTHO05D005419 1.5e-07 60.8 204 27.5
Rhsim13G0125100 Rhododendron simsii HOM05D000017 ORTHO05D000013 3.3e-07 59.7 43 72.1
SEGI_32079 Sequoiadendron giganteum HOM05D004546 ORTHO05D005419 9.6e-07 58.2 220 24.1
Pp3c12_6220 Physcomitrium patens HOM05D004546 ORTHO05D005419 3.6e-06 56.2 177 28.2
CAN.G1882.3 Capsicum annuum HOM05D004546 ORTHO05D005419 6.2e-06 55.5 47 57.4


User provided reference genes

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