Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.L03476 Eucalyptus grandis HOM05D006279 ORTHO05D008055 8.8e-44 179.9 89 100.0
Eucgr.I00130 Eucalyptus grandis HOM05D006279 ORTHO05D008055 1.4e-36 156.0 77 100.0
Eucgr.I00134 Eucalyptus grandis HOM05D006279 ORTHO05D008055 3.7e-34 147.9 83 86.7
Eucgr.I00143 Eucalyptus grandis HOM05D006279 ORTHO05D008055 4.5e-32 141.0 83 81.9
QL10p041722 Quercus lobata HOM05D006279 ORTHO05D008055 4.4e-27 124.4 79 78.5
PGR119G2211 Punica granatum HOM05D006279 ORTHO05D008055 3.7e-26 121.3 77 76.6
Haze_02661 Corylus avellana HOM05D006279 ORTHO05D008055 4.8e-26 120.9 80 75.0
Manes.01G181300 Manihot esculenta HOM05D006279 ORTHO05D008055 4.8e-26 120.9 84 66.7
Haze_02674 Corylus avellana HOM05D006279 ORTHO05D008055 6.3e-26 120.6 80 73.8
Hma1.2p1_0847F.1_g227850 Hydrangea macrophylla HOM05D006279 ORTHO05D008055 6.3e-26 120.6 74 77.0
Dinv44192 Davidia involucrata HOM05D006279 ORTHO05D008055 1.1e-25 119.8 79 74.7
Cpa.g.sc2692.1 Carica papaya HOM05D006279 ORTHO05D008055 9.1e-25 116.7 79 72.2
Actinidia30262 Actinidia chinensis HOM05D006279 ORTHO05D008055 1.2e-24 116.3 76 71.1
Lj1g0019467 Lotus japonicus HOM05D006279 ORTHO05D008055 1.6e-24 115.9 81 66.7
Atru.chr1.2785 Acer truncatum HOM05D006279 ORTHO05D008055 2.0e-24 115.5 79 73.4
TAR623G0329 Trochodendron aralioides HOM05D006279 ORTHO05D008055 2.0e-24 115.5 77 72.7
CSS0005410 Camellia sinensis var. sinensis HOM05D006279 ORTHO05D008055 3.5e-24 114.8 78 73.1
CSS0021017 Camellia sinensis var. sinensis HOM05D006279 ORTHO05D008055 3.5e-24 114.8 78 73.1
Potri.007G102600 Populus trichocarpa HOM05D006279 ORTHO05D008055 3.5e-24 114.8 77 70.1
TWI79G1313 Tripterygium wilfordii HOM05D006279 ORTHO05D008055 3.5e-24 114.8 78 73.1
CANSAT64G0511 Cannabis sativa HOM05D006279 ORTHO05D008055 5.9e-24 114.0 84 70.2
Cfa011174 Carpinus fangiana HOM05D006279 ORTHO05D008055 1.0e-23 113.2 80 71.2
Actinidia20026 Actinidia chinensis HOM05D006279 ORTHO05D008055 1.3e-23 112.8 74 70.3
Sabra07G0084300 Salix brachista HOM05D006279 ORTHO05D008055 2.2e-23 112.1 74 71.6
CiPaw.14G026200 Carya illinoinensis HOM05D006279 ORTHO05D008055 2.9e-23 111.7 79 74.7
Ciclev10003637m.g Citrus clementina HOM05D006279 ORTHO05D008055 2.9e-23 111.7 79 72.2
MD09G1082400 Malus domestica HOM05D006279 ORTHO05D008055 2.9e-23 111.7 85 67.1
vmacro12040 Vaccinium macrocarpon HOM05D006279 ORTHO05D008055 2.9e-23 111.7 74 70.3
CANSAT78G0480 Cannabis sativa HOM05D006279 ORTHO05D008055 3.8e-23 111.3 84 69.0
ClCG02G000360 Citrullus lanatus HOM05D006279 ORTHO05D008055 3.8e-23 111.3 77 67.5
Glyma.18G170600 Glycine max HOM05D006279 ORTHO05D008055 3.8e-23 111.3 74 70.3
Ca_13203_v3 Cicer arietinum L. HOM05D006279 ORTHO05D008055 5.0e-23 110.9 81 64.2
Glyma.08G354200 Glycine max HOM05D006279 ORTHO05D008055 5.0e-23 110.9 74 70.3
Potri.005G066900 Populus trichocarpa HOM05D006279 ORTHO05D008055 5.0e-23 110.9 71 73.2
MD10G1003300 Malus domestica HOM05D006279 ORTHO05D008055 8.5e-23 110.2 85 65.9
Prupe.3G241300 Prunus persica HOM05D006279 ORTHO05D008055 1.1e-22 109.8 83 65.1
RcHm_v2.0_Chr2g0163441 Rosa chinensis HOM05D006279 ORTHO05D008055 1.1e-22 109.8 84 64.3
TPR.G17035 Trifolium pratense HOM05D006279 ORTHO05D008055 1.1e-22 109.8 74 71.6
Phvul.008G125700 Phaseolus vulgaris HOM05D006279 ORTHO05D008055 1.5e-22 109.4 74 71.6
vmacro13565 Vaccinium macrocarpon HOM05D006279 ORTHO05D008055 1.5e-22 109.4 74 70.3
Sabra05G0055000 Salix brachista HOM05D006279 ORTHO05D008055 2.5e-22 108.6 74 68.9
Peaxi162Scf00386g00058 Petunia axillaris HOM05D006279 ORTHO05D008055 4.2e-22 107.8 71 71.8
TAR369G0312 Trochodendron aralioides HOM05D006279 ORTHO05D008055 4.2e-22 107.8 77 66.2
Thecc.08G189700 Theobroma cacao HOM05D006279 ORTHO05D008055 5.5e-22 107.5 79 67.1
VMungo1383G1366 Vigna mungo HOM05D006279 ORTHO05D008055 5.5e-22 107.5 74 68.9
Psat4g003200 Pisum sativum HOM05D006279 ORTHO05D008055 7.2e-22 107.1 71 71.8
Sc09g0002260 Simmondsia chinensis HOM05D006279 ORTHO05D008055 7.2e-22 107.1 80 67.5
SHI36067 Sapria himalayana HOM05D006279 ORTHO05D008055 9.4e-22 106.7 97 60.8
arahy.Tifrunner.gnm1.ann1.96G0FW Arachis hypogaea HOM05D006279 ORTHO05D008055 1.2e-21 106.3 74 68.9
arahy.Tifrunner.gnm1.ann1.YQI87S Arachis hypogaea HOM05D006279 ORTHO05D008055 1.2e-21 106.3 74 68.9
Rhsim10G0172600 Rhododendron simsii HOM05D006279 ORTHO05D008055 1.2e-21 106.3 74 68.9
Aqoxy2G01154 Aquilegia oxysepala HOM05D006279 ORTHO05D008055 1.6e-21 105.9 72 69.4
arahy.Tifrunner.gnm1.ann1.BRZ89T Arachis hypogaea HOM05D006279 ORTHO05D008055 2.1e-21 105.5 71 69.0
Oeu006489.1 Olea europaea HOM05D006279 ORTHO05D008055 2.1e-21 105.5 71 70.4
Cc09_g10080 Coffea canephora HOM05D006279 ORTHO05D008055 3.6e-21 104.8 72 68.1
CAN.G1592.9 Capsicum annuum HOM05D006279 ORTHO05D008055 6.1e-21 104.0 70 71.4
Psat6g191840 Pisum sativum HOM05D006279 ORTHO05D008055 6.1e-21 104.0 72 68.1
Nn2g15145 Nelumbo nucifera HOM05D006279 ORTHO05D008055 8.0e-21 103.6 90 57.8
Nitab4.5_0001688g0060 Nicotiana tabacum HOM05D006279 ORTHO05D008055 8.0e-21 103.6 70 68.6
MBI06_g37673_MAGBIO Magnolia biondii HOM05D006279 ORTHO05D008055 1.0e-20 103.2 64 71.9
MBI06_g46723_MAGBIO Magnolia biondii HOM05D006279 ORTHO05D008055 1.0e-20 103.2 64 71.9
Sed0009157 Sechium edule HOM05D006279 ORTHO05D008055 1.0e-20 103.2 82 58.5
GSVIVG01023542001 Vitis vinifera HOM05D006279 ORTHO05D008055 1.0e-20 103.2 79 64.6
Gohir.A05G286900 Gossypium hirsutum HOM05D006279 ORTHO05D008055 1.4e-20 102.8 74 64.9
Nitab4.5_0000829g0220 Nicotiana tabacum HOM05D006279 ORTHO05D008055 1.4e-20 102.8 70 68.6
FAN09G2945 Fragaria x ananassa HOM05D006279 ORTHO05D008055 1.8e-20 102.4 82 61.0
Gohir.D05G287900 Gossypium hirsutum HOM05D006279 ORTHO05D008055 1.8e-20 102.4 74 64.9
Gorai.009G302900 Gossypium raimondii HOM05D006279 ORTHO05D008055 1.8e-20 102.4 74 64.9
Nitab4.5_0000644g0080 Nicotiana tabacum HOM05D006279 ORTHO05D008055 1.8e-20 102.4 86 59.3
DCAR_026025 Daucus carota HOM05D006279 ORTHO05D008055 2.3e-20 102.1 71 67.6
Duzib177G0075 Durio zibethinus HOM05D006279 ORTHO05D008055 2.3e-20 102.1 79 63.3
FAN05G3461 Fragaria x ananassa HOM05D006279 ORTHO05D008055 2.3e-20 102.1 82 61.0
Atru.chr9.833 Acer truncatum HOM05D000003 ORTHO05D000126 3.0e-20 101.7 72 70.8
PGSC0003DMG400022672 Solanum tuberosum HOM05D006279 ORTHO05D008055 3.0e-20 101.7 70 68.6
CAN.G256.17 Capsicum annuum HOM05D006279 ORTHO05D008055 4.0e-20 101.3 69 69.6
Nitab4.5_0010800g0010 Nicotiana tabacum HOM05D006279 ORTHO05D008055 4.0e-20 101.3 69 66.7
PGSC0003DMG400030782 Solanum tuberosum HOM05D006279 ORTHO05D008055 4.0e-20 101.3 70 67.1
Ah.06g190980 Amaranthus hybridus HOM05D006279 ORTHO05D008055 5.2e-20 100.9 75 65.3
FvH4_6g45500 Fragaria vesca HOM05D006279 ORTHO05D008055 5.2e-20 100.9 74 64.9
FAN14G0828 Fragaria x ananassa HOM05D006279 ORTHO05D008055 5.2e-20 100.9 74 64.9
Peaxi162Scf00033g00134 Petunia axillaris HOM05D006279 ORTHO05D008055 5.2e-20 100.9 70 68.6
THA.LOC104818424 Tarenaya hassleriana HOM05D006279 ORTHO05D008055 6.8e-20 100.5 79 62.0
MSTRG.20541 Avicennia marina HOM05D006279 ORTHO05D008055 8.8e-20 100.1 70 67.1
Migut.B01200 Erythranthe guttata HOM05D006279 ORTHO05D008055 8.8e-20 100.1 55 83.6
COL.COLO4_11288 Corchorus olitorius HOM05D006279 ORTHO05D008055 1.2e-19 99.8 84 54.8
Lalb_Chr01g0022321 Lupinus albus HOM05D006279 ORTHO05D008055 1.2e-19 99.8 71 67.6
Medtr1g098510 Medicago truncatula HOM05D006279 ORTHO05D008055 1.2e-19 99.8 74 64.9
ATR0824G232 Amborella trichopoda HOM05D006279 ORTHO05D008055 2.0e-19 99.0 77 61.0
CsaV3_2G019480 Cucumis sativus L. HOM05D006279 ORTHO05D008055 2.0e-19 99.0 77 61.0
Solyc06g054590.3 Solanum lycopersicum HOM05D006279 ORTHO05D008055 2.0e-19 99.0 70 65.7
Sopen06g019660 Solanum pennellii HOM05D006279 ORTHO05D008055 2.0e-19 99.0 70 65.7
CARHR204140 Cardamine hirsuta HOM05D006279 ORTHO05D008055 3.4e-19 98.2 81 63.0
Lsat_1_v5_gn_5_86080 Lactuca sativa HOM05D006279 ORTHO05D008055 5.7e-19 97.4 72 62.5
EL10Ac4g09617 Beta vulgaris HOM05D006279 ORTHO05D008055 2.2e-18 95.5 80 58.8
COL.COLO4_13057 Corchorus olitorius HOM05D006279 ORTHO05D008055 2.2e-18 95.5 75 61.3
AUR62006855 Chenopodium quinoa HOM05D006279 ORTHO05D008055 2.8e-18 95.1 74 62.2
HanXRQChr10g0308251 Helianthus annuus HOM05D006279 ORTHO05D008055 2.8e-18 95.1 83 56.6
BcaC03g13247 Brassica carinata HOM05D006279 ORTHO05D008055 3.7e-18 94.7 73 58.9
C02p03790 Brassica napus HOM05D006279 ORTHO05D008055 3.7e-18 94.7 73 58.9
Sp6g34040 Schrenkiella parvula HOM05D006279 ORTHO05D008055 3.7e-18 94.7 80 60.0
BcaB05g21561 Brassica carinata HOM05D006279 ORTHO05D008055 4.8e-18 94.4 79 60.8
BolC2t06340H Brassica oleracea HOM05D006279 ORTHO05D008055 4.8e-18 94.4 79 60.8
BraA10t44844Z Brassica rapa HOM05D006279 ORTHO05D008055 4.8e-18 94.4 80 60.0
AUR62000510 Chenopodium quinoa HOM05D006279 ORTHO05D008055 6.3e-18 94.0 74 60.8
Thhalv10015068m.g Eutrema salsugineum HOM05D006279 ORTHO05D008055 6.3e-18 94.0 80 60.0
AL6G19660 Arabidopsis lyrata HOM05D006279 ORTHO05D008055 8.3e-18 93.6 80 60.0
Carub.0006s0782 Capsella rubella HOM05D006279 ORTHO05D008055 8.3e-18 93.6 79 60.8
AT5G09270 Arabidopsis thaliana HOM05D006279 ORTHO05D008055 1.1e-17 93.2 80 60.0
MELO3C023226.2 Cucumis melo HOM05D006279 ORTHO05D008055 1.1e-17 93.2 77 57.1
BraA02t04974Z Brassica rapa HOM05D006279 ORTHO05D008055 1.4e-17 92.8 80 58.8
A10p27950 Brassica napus HOM05D004285 ORTHO05D005176 1.8e-17 92.4 70 62.9
Aa31LG3G17730 Aethionema arabicum HOM05D006279 ORTHO05D008055 3.1e-17 91.7 78 60.3
BcaB08g37221 Brassica carinata HOM05D006279 ORTHO05D008055 3.1e-17 91.7 78 57.7
C09p68090 Brassica napus HOM05D004285 ORTHO05D005176 3.1e-17 91.7 62 66.1
C09p68110 Brassica napus HOM05D006279 ORTHO05D008055 3.1e-17 91.7 62 66.1
C09p68150 Brassica napus HOM05D006279 ORTHO05D008055 3.1e-17 91.7 62 66.1
HPP92_013811 Vanilla planifolia HOM05D006279 ORTHO05D008055 3.1e-17 91.7 62 69.4
BolC9t59565H Brassica oleracea HOM05D004285 ORTHO05D005176 5.4e-17 90.9 77 59.7
C09p68050 Brassica napus HOM05D006279 ORTHO05D008055 2.0e-16 89.0 62 64.5
Os01g0861000 Oryza sativa ssp. japonica HOM05D006279 ORTHO05D008055 3.5e-16 88.2 65 66.2
arahy.Tifrunner.gnm1.ann1.BUL9CE Arachis hypogaea HOM05D006279 ORTHO05D008055 4.2e-14 81.3 50 72.0
COL.COLO4_36340 Corchorus olitorius HOM05D006279 ORTHO05D008055 7.2e-14 80.5 66 53.0
SEGI_20234 Sequoiadendron giganteum HOM05D006279 ORTHO05D008055 3.0e-12 75.1 59 52.5
Sopen01g029410 Solanum pennellii HOM05D006279 ORTHO05D008055 5.7e-11 70.9 52 59.6
Mapoly0027s0076 Marchantia polymorpha HOM05D006279 ORTHO05D008055 2.0e-08 62.4 73 41.1
Pp3c8_7150 Physcomitrium patens HOM05D006279 ORTHO05D008055 6.6e-07 57.4 70 38.6


User provided reference genes

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