Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.L03441 Eucalyptus grandis HOM05D003663 ORTHO05D005327 7.2e-62 240.4 117 100.0
Glyma.09G012100 Glycine max HOM05D003663 ORTHO05D005327 5.9e-40 167.5 118 65.3
TPR.G10569 Trifolium pratense HOM05D003663 ORTHO05D005327 5.9e-40 167.5 117 64.1
Ca_00744_v3 Cicer arietinum L. HOM05D003663 ORTHO05D005327 1.7e-39 166.0 117 63.2
Psat1g178200 Pisum sativum HOM05D003663 ORTHO05D005327 1.7e-39 166.0 117 63.2
Lj6g0026147 Lotus japonicus HOM05D003663 ORTHO05D005327 1.9e-38 162.5 116 62.9
Lalb_Chr20g0119391 Lupinus albus HOM05D003663 ORTHO05D005327 1.9e-38 162.5 118 63.6
arahy.Tifrunner.gnm1.ann1.5NF29Y Arachis hypogaea HOM05D003663 ORTHO05D005327 1.2e-37 159.8 117 61.5
arahy.Tifrunner.gnm1.ann1.CR9YGF Arachis hypogaea HOM05D003663 ORTHO05D005327 1.2e-37 159.8 117 61.5
Prupe.4G006800 Prunus persica HOM05D003663 ORTHO05D005327 3.6e-37 158.3 116 59.5
Phvul.006G141400 Phaseolus vulgaris HOM05D003663 ORTHO05D005327 6.1e-37 157.5 118 61.0
FAN25G1738 Fragaria x ananassa HOM05D003663 ORTHO05D005327 3.4e-35 151.8 117 57.3
VMungo0540G0424 Vigna mungo HOM05D003663 ORTHO05D005327 7.5e-35 150.6 118 55.9
FvH4_3g00560 Fragaria vesca HOM05D003663 ORTHO05D005327 1.3e-34 149.8 117 55.6
Sed0020467 Sechium edule HOM05D003663 ORTHO05D005327 4.1e-33 144.8 118 58.5
ClCG01G010650 Citrullus lanatus HOM05D003663 ORTHO05D005327 1.2e-32 143.3 118 58.5
TAR627G0054 Trochodendron aralioides HOM05D003663 ORTHO05D005327 5.9e-32 141.0 119 56.3
TWI38G0283 Tripterygium wilfordii HOM05D003663 ORTHO05D005327 8.6e-31 137.1 126 54.0
Sed0002316 Sechium edule HOM05D003663 ORTHO05D005327 1.5e-30 136.3 118 55.9
Glyma.14G007200 Glycine max HOM05D003663 ORTHO05D005327 1.9e-30 136.0 119 55.5
Psat2g004440 Pisum sativum HOM05D003663 ORTHO05D005327 9.5e-30 133.7 119 53.8
Ca_06459_v3 Cicer arietinum L. HOM05D003663 ORTHO05D005327 1.6e-29 132.9 119 52.9
LjContig00081g0009748 Lotus japonicus HOM05D003663 ORTHO05D005327 1.6e-29 132.9 119 53.8
Phvul.008G285700 Phaseolus vulgaris HOM05D003663 ORTHO05D005327 1.6e-29 132.9 119 55.5
VMungo0647G1338 Vigna mungo HOM05D003663 ORTHO05D005327 2.8e-29 132.1 119 53.8
Medtr5g097370 Medicago truncatula HOM05D003663 ORTHO05D005327 6.1e-29 131.0 119 52.1
Nn1g03229 Nelumbo nucifera HOM05D003663 ORTHO05D005327 1.0e-28 130.2 119 49.6
TPR.G1287 Trifolium pratense HOM05D003663 ORTHO05D005327 1.0e-28 130.2 121 53.7
TWI36G0551 Tripterygium wilfordii HOM05D003663 ORTHO05D005327 1.8e-28 129.4 115 54.8
arahy.Tifrunner.gnm1.ann1.8QBK2E Arachis hypogaea HOM05D003663 ORTHO05D005327 1.2e-27 126.7 121 52.1
arahy.Tifrunner.gnm1.ann1.P7DY53 Arachis hypogaea HOM05D003663 ORTHO05D005327 1.2e-27 126.7 121 52.1
CsaV3_7G023690 Cucumis sativus L. HOM05D003663 ORTHO05D005327 1.2e-27 126.7 117 53.8
Lalb_Chr17g0349111 Lupinus albus HOM05D003663 ORTHO05D005327 2.6e-27 125.6 119 50.4
Sed0003500 Sechium edule HOM05D003663 ORTHO05D005327 3.4e-27 125.2 117 52.1
MELO3C024107.2 Cucumis melo HOM05D003663 ORTHO05D005327 5.8e-27 124.4 119 51.3
Aqoxy1G04229 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 9.8e-27 123.6 119 49.6
Aqoxy3G02718 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 2.2e-26 122.5 117 47.9
Hma1.2p1_1267F.1_g271530 Hydrangea macrophylla HOM05D003663 ORTHO05D005327 2.9e-26 122.1 117 49.6
Aqoxy1G04227 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 4.9e-26 121.3 119 52.1
Hma1.2p1_2614F.1_g325410 Hydrangea macrophylla HOM05D003663 ORTHO05D005327 8.3e-26 120.6 117 48.7
MELO3C028604.2 Cucumis melo HOM05D003663 ORTHO05D005327 1.9e-25 119.4 117 48.7
Sed0016160 Sechium edule HOM05D003663 ORTHO05D005327 1.9e-25 119.4 118 50.0
PGR142G2458 Punica granatum HOM05D003663 ORTHO05D005327 3.2e-25 118.6 120 50.0
ClCG02G002710 Citrullus lanatus HOM05D003663 ORTHO05D005327 5.4e-25 117.9 117 48.7
ATR0624G116 Amborella trichopoda HOM05D003663 ORTHO05D005327 1.0e-23 113.6 118 41.5
CAN.G65.131 Capsicum annuum HOM05D003663 ORTHO05D005327 1.0e-23 113.6 117 46.2
AT5G26730 Arabidopsis thaliana HOM05D003663 ORTHO05D005327 1.3e-23 113.2 116 48.3
Potri.006G016700 Populus trichocarpa HOM05D003663 ORTHO05D005327 2.3e-23 112.5 117 47.9
AL6G38450 Arabidopsis lyrata HOM05D003663 ORTHO05D005327 6.6e-23 110.9 116 47.4
Aqoxy1G04228 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 8.6e-23 110.5 119 45.4
CARHR186960 Cardamine hirsuta HOM05D003663 ORTHO05D005327 1.5e-22 109.8 116 48.3
Medtr2g026520 Medicago truncatula HOM05D003663 ORTHO05D005327 1.5e-22 109.8 84 60.7
Peaxi162Scf00815g00311 Petunia axillaris HOM05D003663 ORTHO05D005327 1.5e-22 109.8 117 43.6
Carub.0006s2423 Capsella rubella HOM05D003663 ORTHO05D005327 5.6e-22 107.8 117 49.6
DCAR_010543 Daucus carota HOM05D003663 ORTHO05D005327 7.3e-22 107.5 116 39.7
Nitab4.5_0001762g0070 Nicotiana tabacum HOM05D003663 ORTHO05D005327 9.5e-22 107.1 120 44.2
CANSAT21G0248 Cannabis sativa HOM05D003663 ORTHO05D005327 1.2e-21 106.7 117 41.0
Thhalv10005288m.g Eutrema salsugineum HOM05D003663 ORTHO05D005327 1.2e-21 106.7 116 44.8
BcaB04g19727 Brassica carinata HOM05D003663 ORTHO05D005327 2.1e-21 105.9 116 44.8
A09p05770 Brassica napus HOM05D003663 ORTHO05D005327 2.8e-21 105.5 116 44.8
BraA09t36218Z Brassica rapa HOM05D003663 ORTHO05D005327 2.8e-21 105.5 116 44.8
MD09G1122000 Malus domestica HOM05D003663 ORTHO05D005327 4.7e-21 104.8 118 44.1
Nn3g19378 Nelumbo nucifera HOM05D003663 ORTHO05D005327 6.2e-21 104.4 117 42.7
Sopen06g029160 Solanum pennellii HOM05D003663 ORTHO05D005327 6.2e-21 104.4 117 41.9
PGSC0003DMG400027034 Solanum tuberosum HOM05D003663 ORTHO05D005327 6.2e-21 104.4 117 41.9
C09p06370 Brassica napus HOM05D003663 ORTHO05D005327 8.0e-21 104.0 116 44.0
Nitab4.5_0000021g0580 Nicotiana tabacum HOM05D003663 ORTHO05D005327 8.0e-21 104.0 120 42.5
PSO210G1796 Papaver somniferum HOM05D003663 ORTHO05D005327 8.0e-21 104.0 120 41.7
PSO302G0013 Papaver somniferum HOM05D003663 ORTHO05D005327 8.0e-21 104.0 120 41.7
Sp6g27190 Schrenkiella parvula HOM05D003663 ORTHO05D005327 8.0e-21 104.0 119 43.7
TPR.G17125 Trifolium pratense HOM05D003663 ORTHO05D005327 8.0e-21 104.0 117 42.7
BcaC04g23626 Brassica carinata HOM05D003663 ORTHO05D005327 1.1e-20 103.6 116 44.0
Lj4g0026545 Lotus japonicus HOM05D003663 ORTHO05D005327 1.1e-20 103.6 117 40.2
TWI34G0428 Tripterygium wilfordii HOM05D003663 ORTHO05D005327 1.1e-20 103.6 117 42.7
TAR374G1477 Trochodendron aralioides HOM05D003663 ORTHO05D005327 1.1e-20 103.6 120 40.0
Medtr4g099150 Medicago truncatula HOM05D003663 ORTHO05D005327 1.4e-20 103.2 117 41.9
Psat4g076520 Pisum sativum HOM05D003663 ORTHO05D005327 1.8e-20 102.8 117 41.0
BolC9t53556H Brassica oleracea HOM05D003663 ORTHO05D005327 2.3e-20 102.4 116 43.1
THA.LOC104826655 Tarenaya hassleriana HOM05D003663 ORTHO05D005327 2.3e-20 102.4 117 43.6
QL09p023778 Quercus lobata HOM05D003663 ORTHO05D005327 3.1e-20 102.1 117 41.0
Aqoxy3G02161 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 4.0e-20 101.7 116 40.5
CSS0037566 Camellia sinensis var. sinensis HOM05D003663 ORTHO05D005327 4.0e-20 101.7 118 41.5
Haze_00422 Corylus avellana HOM05D003663 ORTHO05D005327 6.8e-20 100.9 117 39.3
Manes.09G126900 Manihot esculenta HOM05D003663 ORTHO05D005327 8.9e-20 100.5 117 41.9
Oeu060390.1 Olea europaea HOM05D002083 ORTHO05D000332 8.9e-20 100.5 117 41.9
Ciclev10021912m.g Citrus clementina HOM05D003663 ORTHO05D005327 1.2e-19 100.1 117 41.9
BcaNung00434 Brassica carinata HOM05D003663 ORTHO05D005327 1.5e-19 99.8 119 43.7
Cfa016035 Carpinus fangiana HOM05D003663 ORTHO05D005327 1.5e-19 99.8 117 39.3
Duzib106G1874 Durio zibethinus HOM05D003663 ORTHO05D005327 1.5e-19 99.8 118 44.1
Lalb_Chr05g0220821 Lupinus albus HOM05D003663 ORTHO05D005327 1.5e-19 99.8 117 37.6
EL10Ac3g05074 Beta vulgaris HOM05D003663 ORTHO05D005327 2.6e-19 99.0 117 40.2
BcaC03g18525 Brassica carinata HOM05D003663 ORTHO05D005327 3.4e-19 98.6 118 41.5
A02p03870 Brassica napus HOM05D003663 ORTHO05D005327 3.4e-19 98.6 118 42.4
C02p08670 Brassica napus HOM05D003663 ORTHO05D005327 3.4e-19 98.6 118 41.5
HanXRQChr14g0462981 Helianthus annuus HOM05D003663 ORTHO05D005327 4.4e-19 98.2 120 39.2
Potri.019G049600 Populus trichocarpa HOM05D003663 ORTHO05D005327 4.4e-19 98.2 117 40.2
Sabra19G0059300 Salix brachista HOM05D003663 ORTHO05D005327 4.4e-19 98.2 117 41.0
MBI04_g20973_MAGBIO Magnolia biondii HOM05D003663 ORTHO05D005327 5.8e-19 97.8 117 41.0
BolC2t06783H Brassica oleracea HOM05D003663 ORTHO05D005327 7.5e-19 97.4 118 40.7
BraA02t05351Z Brassica rapa HOM05D003663 ORTHO05D005327 7.5e-19 97.4 118 41.5
Duzib177G0557 Durio zibethinus HOM05D003663 ORTHO05D005327 7.5e-19 97.4 118 41.5
Hma1.2p1_1680F.1_g297170 Hydrangea macrophylla HOM05D003663 ORTHO05D005327 7.5e-19 97.4 117 39.3
Phvul.003G226500 Phaseolus vulgaris HOM05D003663 ORTHO05D005327 7.5e-19 97.4 117 38.5
THA.LOC104827213 Tarenaya hassleriana HOM05D003663 ORTHO05D005327 7.5e-19 97.4 118 38.1
Oeu027885.1 Olea europaea HOM05D003663 ORTHO05D005327 9.8e-19 97.1 117 41.0
Ah.13g072750 Amaranthus hybridus HOM05D003663 ORTHO05D005327 1.3e-18 96.7 117 39.3
CiPaw.06G032900 Carya illinoinensis HOM05D003663 ORTHO05D005327 1.3e-18 96.7 117 39.3
Eucgr.K00086 Eucalyptus grandis HOM05D003663 ORTHO05D005327 1.7e-18 96.3 120 42.5
VMungo0251G1526 Vigna mungo HOM05D003663 ORTHO05D005327 1.7e-18 96.3 117 37.6
Ciclev10017620m.g Citrus clementina HOM05D003663 ORTHO05D005327 2.2e-18 95.9 118 42.4
A06p36830 Brassica napus HOM05D003663 ORTHO05D005327 2.9e-18 95.5 111 44.1
BraA06t26609Z Brassica rapa HOM05D003663 ORTHO05D005327 2.9e-18 95.5 111 44.1
Rhsim03G0221600 Rhododendron simsii HOM05D003663 ORTHO05D005327 2.9e-18 95.5 117 40.2
Sc13g0010870 Simmondsia chinensis HOM05D003663 ORTHO05D005327 2.9e-18 95.5 117 41.0
BcaNung02825 Brassica carinata HOM05D003663 ORTHO05D005327 3.7e-18 95.1 111 44.1
BcaNung03959 Brassica carinata HOM05D003663 ORTHO05D005327 3.7e-18 95.1 111 43.2
C07p41660 Brassica napus HOM05D003663 ORTHO05D005327 3.7e-18 95.1 111 44.1
BolC7t44701H Brassica oleracea HOM05D003663 ORTHO05D005327 3.7e-18 95.1 111 44.1
Cpa.g.sc504.5 Carica papaya HOM05D003663 ORTHO05D005327 3.7e-18 95.1 117 41.9
Migut.F00942 Erythranthe guttata HOM05D003663 ORTHO05D005327 3.7e-18 95.1 118 37.3
SGA_v2.0_scaffold50G18444 Striga asiatica HOM05D003663 ORTHO05D005327 4.9e-18 94.7 120 38.3
Glyma.17G149700 Glycine max HOM05D003663 ORTHO05D005327 6.4e-18 94.4 118 39.0
AUR62002065 Chenopodium quinoa HOM05D003663 ORTHO05D005327 8.3e-18 94.0 117 39.3
Cc00_g28240 Coffea canephora HOM05D003663 ORTHO05D005327 8.3e-18 94.0 132 42.4
Carub.0006s1513 Capsella rubella HOM05D003663 ORTHO05D005327 1.1e-17 93.6 118 40.7
PSO782G5365 Papaver somniferum HOM05D003663 ORTHO05D005327 1.1e-17 93.6 118 39.0
Rhsim09G0213000 Rhododendron simsii HOM05D003663 ORTHO05D005327 1.9e-17 92.8 117 37.6
Lj3P887T57 Lonicera japonica HOM05D003663 ORTHO05D005327 2.4e-17 92.4 120 39.2
CARHR196240 Cardamine hirsuta HOM05D003663 ORTHO05D005327 3.2e-17 92.0 118 39.8
Gohir.D11G318900 Gossypium hirsutum HOM05D003663 ORTHO05D005327 3.2e-17 92.0 118 41.5
Gorai.007G348900 Gossypium raimondii HOM05D003663 ORTHO05D005327 3.2e-17 92.0 118 41.5
PSO063G6858 Papaver somniferum HOM05D003663 ORTHO05D005327 4.1e-17 91.7 118 38.1
CsaV3_7G002660 Cucumis sativus L. HOM05D003663 ORTHO05D005327 7.0e-17 90.9 86 51.2
ATR0829G139 Amborella trichopoda HOM05D003663 ORTHO05D005327 9.2e-17 90.5 116 38.8
ECA233G1163 Erigeron canadensis HOM05D003663 ORTHO05D005327 9.2e-17 90.5 118 35.6
Gohir.A11G303600 Gossypium hirsutum HOM05D003663 ORTHO05D005327 9.2e-17 90.5 118 40.7
COL.COLO4_06064 Corchorus olitorius HOM05D003663 ORTHO05D005327 1.2e-16 90.1 118 39.0
Lsat_1_v5_gn_2_136720 Lactuca sativa HOM05D003663 ORTHO05D005327 1.2e-16 90.1 117 36.8
AL6G27920 Arabidopsis lyrata HOM05D003663 ORTHO05D005327 3.5e-16 88.6 119 39.5
AT5G16920 Arabidopsis thaliana HOM05D003663 ORTHO05D005327 4.6e-16 88.2 119 39.5
Thhalv10014405m.g Eutrema salsugineum HOM05D003663 ORTHO05D005327 4.6e-16 88.2 118 38.1
SalBow2G0094 Salvia bowleyana HOM05D003663 ORTHO05D005327 4.6e-16 88.2 118 36.4
Sp2g21370 Schrenkiella parvula HOM05D003663 ORTHO05D005327 7.8e-16 87.4 105 41.0
Potri.016G009000 Populus trichocarpa HOM05D003663 ORTHO05D005327 1.7e-15 86.3 60 65.0
RcHm_v2.0_Chr2g0156681 Rosa chinensis HOM05D003663 ORTHO05D005327 3.0e-15 85.5 86 44.2
BcaB07g29963 Brassica carinata HOM05D003663 ORTHO05D005327 3.9e-15 85.1 92 43.5
Prupe.2G326500 Prunus persica HOM05D003663 ORTHO05D005327 3.9e-15 85.1 131 38.2
Nn1g01862 Nelumbo nucifera HOM05D003663 ORTHO05D005327 5.1e-15 84.7 88 45.5
vmacro22176 Vaccinium macrocarpon HOM05D003663 ORTHO05D005327 8.6e-15 84.0 120 34.2
PGR142G2930 Punica granatum HOM05D003663 ORTHO05D005327 2.5e-14 82.4 119 36.1
Duzib128G0448 Durio zibethinus HOM05D003663 ORTHO05D005327 1.2e-13 80.1 118 36.4
Glyma.02G305800 Glycine max HOM05D003663 ORTHO05D005327 4.7e-13 78.2 75 53.3
Prupe.3G201600 Prunus persica HOM05D003663 ORTHO05D005327 1.1e-12 77.0 115 36.5
BcaB04g19726 Brassica carinata HOM05D003663 ORTHO05D005327 3.1e-12 75.5 122 36.9
A02p39370 Brassica napus HOM05D003663 ORTHO05D010021 4.0e-12 75.1 122 35.2
Lalb_Chr16g0386341 Lupinus albus HOM05D003663 ORTHO05D005327 7.5e-11 70.9 80 38.8
Actinidia33794 Actinidia chinensis HOM05D003663 ORTHO05D005327 7.1e-09 64.3 108 34.3
Glyma.15G116750 Glycine max HOM05D003663 ORTHO05D005327 1.3e-07 60.1 38 63.2
Mapoly0033s0033 Marchantia polymorpha HOM05D005423 ORTHO05D006223 1.9e-06 56.2 111 29.7
Thecc.05G213800 Theobroma cacao HOM05D003663 ORTHO05D005327 1.9e-06 56.2 118 30.5


User provided reference genes

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