Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.L03392 Eucalyptus grandis HOM05D000051 ORTHO05D000493 4.8e-85 317.8 160 100.0
COL.COLO4_33627 Corchorus olitorius HOM05D001396 ORTHO05D000493 5.3e-15 85.1 191 33.5
Rhsim06G0150800 Rhododendron simsii HOM05D001396 ORTHO05D000493 6.1e-11 71.6 197 29.9
COL.COLO4_36555 Corchorus olitorius HOM05D001396 ORTHO05D000493 3.9e-10 68.9 207 30.4
Migut.M00842 Erythranthe guttata HOM05D000051 ORTHO05D000015 5.1e-10 68.6 162 29.0
Hma1.2p1_0565F.1_g179460 Hydrangea macrophylla HOM05D001396 ORTHO05D000493 1.1e-09 67.4 192 30.2
FvH4_3g17190 Fragaria vesca HOM05D000051 ORTHO05D000015 1.9e-09 66.6 143 35.7
FAN11G1258 Fragaria x ananassa HOM05D000051 ORTHO05D000015 1.9e-09 66.6 143 35.7
Migut.M00844 Erythranthe guttata HOM05D000051 ORTHO05D000015 2.5e-09 66.2 161 32.9
PGR042G3181 Punica granatum HOM05D001396 ORTHO05D000493 2.5e-09 66.2 210 27.6
Nitab4.5_0008458g0050 Nicotiana tabacum HOM05D000051 ORTHO05D000493 4.3e-09 65.5 165 29.7
Nitab4.5_0013834g0010 Nicotiana tabacum HOM05D005268 ORTHO05D000493 4.3e-09 65.5 123 33.3
Peaxi162Scf00132g00721 Petunia axillaris HOM05D001396 ORTHO05D000493 4.3e-09 65.5 210 28.6
FAN16G1794 Fragaria x ananassa HOM05D000100 ORTHO05D000052 5.7e-09 65.1 144 34.0
Eucgr.K01565 Eucalyptus grandis HOM05D000051 ORTHO05D000493 1.3e-08 63.9 206 31.6
vmacro14310 Vaccinium macrocarpon HOM05D000051 ORTHO05D000015 1.3e-08 63.9 155 36.1
Dinv23707 Davidia involucrata HOM05D001396 ORTHO05D000493 2.8e-08 62.8 191 30.9
Rhsim06G0150600 Rhododendron simsii HOM05D001396 ORTHO05D000493 2.8e-08 62.8 190 29.5
Nitab4.5_0010157g0010 Nicotiana tabacum HOM05D005268 ORTHO05D000493 3.7e-08 62.4 140 31.4
Migut.M00827 Erythranthe guttata HOM05D000051 ORTHO05D000015 4.8e-08 62.0 166 28.9
Gorai.002G084900 Gossypium raimondii HOM05D000051 ORTHO05D000015 4.8e-08 62.0 164 34.1
Hma1.2p1_0106F.1_g050990 Hydrangea macrophylla HOM05D001396 ORTHO05D000493 4.8e-08 62.0 201 28.9
Lj1A868T32 Lonicera japonica HOM05D000051 ORTHO05D000015 8.2e-08 61.2 182 31.9
SGA_v2.0_scaffold73G24281 Striga asiatica HOM05D000051 ORTHO05D000015 8.2e-08 61.2 169 31.4
Gohir.D01G064100 Gossypium hirsutum HOM05D000051 ORTHO05D000015 1.1e-07 60.8 165 34.5
Peaxi162Scf00168g00921 Petunia axillaris HOM05D005268 ORTHO05D000493 1.1e-07 60.8 171 30.4
Dinv23709 Davidia involucrata HOM05D000051 ORTHO05D000493 1.4e-07 60.5 166 33.1
Nitab4.5_0005678g0060 Nicotiana tabacum HOM05D001396 ORTHO05D000493 1.4e-07 60.5 142 31.0
Hund23611 Selenicereus undatus HOM05D001396 ORTHO05D000493 1.4e-07 60.5 160 30.0
Gorai.005G010700 Gossypium raimondii HOM05D000051 ORTHO05D000015 1.8e-07 60.1 166 32.5
Sopen01g027170 Solanum pennellii HOM05D005268 ORTHO05D000493 1.8e-07 60.1 169 28.4
Duzib187G1689 Durio zibethinus HOM05D000051 ORTHO05D000015 3.1e-07 59.3 152 38.8
FvH4_2g40800 Fragaria vesca HOM05D000051 ORTHO05D000015 3.1e-07 59.3 132 35.6
FAN11G1423 Fragaria x ananassa HOM05D000051 ORTHO05D008292 3.1e-07 59.3 147 34.0
Gohir.D02G009200 Gossypium hirsutum HOM05D000051 ORTHO05D000015 3.1e-07 59.3 139 33.1
Gorai.005G011000 Gossypium raimondii HOM05D000051 ORTHO05D000015 3.1e-07 59.3 139 33.1
Nitab4.5_0000830g0090 Nicotiana tabacum HOM05D005268 ORTHO05D000493 3.1e-07 59.3 167 28.7
Nitab4.5_0001915g0030 Nicotiana tabacum HOM05D005268 ORTHO05D000493 3.1e-07 59.3 141 29.8
Sopen07g028310 Solanum pennellii HOM05D001396 ORTHO05D000493 3.1e-07 59.3 206 25.7
AL5G41080 Arabidopsis lyrata HOM05D000689 ORTHO05D000015 4.1e-07 58.9 176 31.8
Gohir.A01G076601 Gossypium hirsutum HOM05D000051 ORTHO05D000015 4.1e-07 58.9 164 33.5
Gorai.005G010600 Gossypium raimondii HOM05D000051 ORTHO05D000015 4.1e-07 58.9 162 32.1
TAR624G0037 Trochodendron aralioides HOM05D001396 ORTHO05D000493 4.1e-07 58.9 199 27.1
Actinidia24061 Actinidia chinensis HOM05D001396 ORTHO05D000493 5.3e-07 58.5 157 32.5
AT4G14103 Arabidopsis thaliana HOM05D000689 ORTHO05D000015 5.3e-07 58.5 148 32.4
BcaB08g34719 Brassica carinata HOM05D000689 ORTHO05D000015 5.3e-07 58.5 160 29.4
COL.COLO4_11297 Corchorus olitorius HOM05D000051 ORTHO05D000015 5.3e-07 58.5 136 33.8
Dinv39826 Davidia involucrata HOM05D001396 ORTHO05D000493 5.3e-07 58.5 172 30.2
Glyma.18G164400 Glycine max HOM05D000051 ORTHO05D000015 5.3e-07 58.5 175 30.3
Lj7A357T28 Lonicera japonica HOM05D000051 ORTHO05D000015 5.3e-07 58.5 166 29.5
RcHm_v2.0_Chr2g0115721 Rosa chinensis HOM05D000051 ORTHO05D000015 5.3e-07 58.5 158 32.3
CSS0023889 Camellia sinensis var. sinensis HOM05D000051 ORTHO05D000015 6.9e-07 58.2 171 28.7
FvH4_2g27130 Fragaria vesca HOM05D000312 ORTHO05D000221 6.9e-07 58.2 164 29.9
FAN20G2836 Fragaria x ananassa HOM05D000051 ORTHO05D000015 6.9e-07 58.2 137 34.3
FAN24G3184 Fragaria x ananassa HOM05D000312 ORTHO05D000221 6.9e-07 58.2 164 29.9
Gohir.D02G008900 Gossypium hirsutum HOM05D000051 ORTHO05D000015 6.9e-07 58.2 162 32.1
Phvul.004G016300 Phaseolus vulgaris HOM05D000051 ORTHO05D000015 6.9e-07 58.2 170 28.2
Phvul.008G128500 Phaseolus vulgaris HOM05D000051 ORTHO05D000015 6.9e-07 58.2 143 37.1
Sc18g0000320 Simmondsia chinensis HOM05D000051 ORTHO05D000493 6.9e-07 58.2 192 24.0
BolC8t48260H Brassica oleracea HOM05D000051 ORTHO05D000015 9.0e-07 57.8 139 31.7
Migut.M00821 Erythranthe guttata HOM05D000051 ORTHO05D000015 9.0e-07 57.8 154 33.8
FAN18G1664 Fragaria x ananassa HOM05D000312 ORTHO05D000221 9.0e-07 57.8 171 28.1
Gohir.A01G077700 Gossypium hirsutum HOM05D000051 ORTHO05D000015 9.0e-07 57.8 172 32.0
Lalb_Chr03g0034431 Lupinus albus HOM05D001243 ORTHO05D000843 9.0e-07 57.8 143 31.5
Solyc01g065740.3 Solanum lycopersicum HOM05D005268 ORTHO05D000493 9.0e-07 57.8 169 28.4
Solyc07g054370.3 Solanum lycopersicum HOM05D001396 ORTHO05D000493 9.0e-07 57.8 206 24.3
SGA_v2.0_scaffold34G13836 Striga asiatica HOM05D000051 ORTHO05D000015 9.0e-07 57.8 170 28.8
arahy.Tifrunner.gnm1.ann1.EWQ7EA Arachis hypogaea HOM05D000051 ORTHO05D000015 1.2e-06 57.4 187 29.4
BcaB01g00094 Brassica carinata HOM05D000051 ORTHO05D000015 1.2e-06 57.4 171 30.4
Dinv18996 Davidia involucrata HOM05D001396 ORTHO05D000493 1.2e-06 57.4 173 30.1
Nitab4.5_0001090g0090 Nicotiana tabacum HOM05D001396 ORTHO05D000493 1.2e-06 57.4 179 29.6
CSS0033794 Camellia sinensis var. sinensis HOM05D000051 ORTHO05D000015 1.5e-06 57.0 165 29.1
AUR62015680 Chenopodium quinoa HOM05D000051 ORTHO05D000015 1.5e-06 57.0 181 29.3
COL.COLO4_04774 Corchorus olitorius HOM05D001396 ORTHO05D000493 1.5e-06 57.0 188 28.7
Migut.M00824 Erythranthe guttata HOM05D000051 ORTHO05D000015 1.5e-06 57.0 155 32.3
Hma1.2p1_1524F.1_g288820 Hydrangea macrophylla HOM05D001396 ORTHO05D000493 1.5e-06 57.0 161 31.1
RcHm_v2.0_Chr6g0295991 Rosa chinensis HOM05D000312 ORTHO05D000221 1.5e-06 57.0 168 29.8
Sopen07g028290 Solanum pennellii HOM05D001396 ORTHO05D000493 1.5e-06 57.0 208 26.4
TPR.G39088 Trifolium pratense HOM05D000051 ORTHO05D000015 1.5e-06 57.0 176 29.5
Dinv15484 Davidia involucrata HOM05D001396 ORTHO05D000493 2.0e-06 56.6 206 25.7
Dinv18998 Davidia involucrata HOM05D001396 ORTHO05D000493 2.0e-06 56.6 172 30.2
Eucgr.E03436 Eucalyptus grandis HOM05D001396 ORTHO05D000493 2.0e-06 56.6 172 27.3
RcHm_v2.0_Chr4g0417411 Rosa chinensis HOM05D000051 ORTHO05D000015 2.0e-06 56.6 146 32.9
Thecc.07G194300 Theobroma cacao HOM05D000051 ORTHO05D000015 2.0e-06 56.6 96 38.5
BolC5t35093H Brassica oleracea HOM05D000689 ORTHO05D000015 2.6e-06 56.2 166 28.9
CSS0002318 Camellia sinensis var. sinensis HOM05D000051 ORTHO05D000015 2.6e-06 56.2 162 29.6
Gohir.A02G008660 Gossypium hirsutum HOM05D000051 ORTHO05D000015 2.6e-06 56.2 142 33.1
MD00G1039500 Malus domestica HOM05D000312 ORTHO05D000221 2.6e-06 56.2 171 28.1
Nitab4.5_0001090g0020 Nicotiana tabacum HOM05D001396 ORTHO05D000493 2.6e-06 56.2 206 25.7
Prupe.4G158700 Prunus persica HOM05D000051 ORTHO05D000015 2.6e-06 56.2 146 35.6
AT4G14096 Arabidopsis thaliana HOM05D000689 ORTHO05D000015 3.4e-06 55.8 146 29.5
CSS0019187 Camellia sinensis var. sinensis HOM05D000051 ORTHO05D000015 3.4e-06 55.8 160 30.0
Eucgr.L02613 Eucalyptus grandis HOM05D001396 ORTHO05D000493 3.4e-06 55.8 168 25.6
Gohir.A02G008600 Gossypium hirsutum HOM05D000051 ORTHO05D000015 3.4e-06 55.8 142 32.4
Hma1.2p1_2867F.1_g329630 Hydrangea macrophylla HOM05D001396 ORTHO05D000493 3.4e-06 55.8 167 30.5
Medtr3g114200 Medicago truncatula HOM05D000051 ORTHO05D000015 3.4e-06 55.8 136 29.4
Peaxi162Scf00066g01521 Petunia axillaris HOM05D005268 ORTHO05D000493 3.4e-06 55.8 178 28.7
Peaxi162Scf00168g01126 Petunia axillaris HOM05D005268 ORTHO05D000493 3.4e-06 55.8 168 28.6
Actinidia05113 Actinidia chinensis HOM05D000051 ORTHO05D000015 4.5e-06 55.5 188 32.4
AT3G59200 Arabidopsis thaliana HOM05D000689 ORTHO05D000015 4.5e-06 55.5 176 30.7
arahy.Tifrunner.gnm1.ann1.LJ2QE1 Arachis hypogaea HOM05D000051 ORTHO05D000015 4.5e-06 55.5 185 28.6
Ciclev10011675m.g Citrus clementina HOM05D000051 ORTHO05D000015 4.5e-06 55.5 160 31.2
Migut.M00823 Erythranthe guttata HOM05D000051 ORTHO05D000015 4.5e-06 55.5 161 29.8
FAN15G3436 Fragaria x ananassa HOM05D000312 ORTHO05D000221 4.5e-06 55.5 179 29.6
Gorai.013G162600 Gossypium raimondii HOM05D000051 ORTHO05D000015 4.5e-06 55.5 86 37.2
Medtr7g034110 Medicago truncatula HOM05D000051 ORTHO05D000015 4.5e-06 55.5 150 36.0
Nn1g07075 Nelumbo nucifera HOM05D000051 ORTHO05D000015 4.5e-06 55.5 171 29.8
Peaxi162Scf00066g01320 Petunia axillaris HOM05D005268 ORTHO05D000493 4.5e-06 55.5 140 30.7
Rhsim06G0150700 Rhododendron simsii HOM05D001396 ORTHO05D000493 4.5e-06 55.5 195 27.2
Rhsim13G0198300 Rhododendron simsii HOM05D000051 ORTHO05D000015 4.5e-06 55.5 142 29.6
CAN.G248.54 Capsicum annuum HOM05D001396 ORTHO05D000493 5.9e-06 55.1 209 27.8
AUR62027764 Chenopodium quinoa HOM05D000051 ORTHO05D000493 5.9e-06 55.1 194 29.4
Dinv36032 Davidia involucrata HOM05D000312 ORTHO05D000221 5.9e-06 55.1 173 28.3
Migut.G00077 Erythranthe guttata HOM05D000051 ORTHO05D000015 5.9e-06 55.1 162 28.4
Hma1.2p1_1344F.1_g277030 Hydrangea macrophylla HOM05D000051 ORTHO05D000015 5.9e-06 55.1 179 31.3
Oeu045163.1 Olea europaea HOM05D000051 ORTHO05D000843 5.9e-06 55.1 83 34.9
Phvul.004G015200 Phaseolus vulgaris HOM05D000051 ORTHO05D000015 5.9e-06 55.1 175 28.6
QL06p002351 Quercus lobata HOM05D000051 ORTHO05D000015 5.9e-06 55.1 171 32.2
QL08p012268 Quercus lobata HOM05D000051 ORTHO05D000015 5.9e-06 55.1 174 29.9
SGA_v2.0_scaffold34G13930 Striga asiatica HOM05D000051 ORTHO05D000015 5.9e-06 55.1 152 32.2
CSS0033868 Camellia sinensis var. sinensis HOM05D000051 ORTHO05D000015 7.7e-06 54.7 160 29.4
Carub.0005s1194 Capsella rubella HOM05D000051 ORTHO05D000015 7.7e-06 54.7 173 27.7
FvH4_3g33370 Fragaria vesca HOM05D000051 ORTHO05D000015 7.7e-06 54.7 138 29.7
FvH4_5g20540 Fragaria vesca HOM05D000312 ORTHO05D000221 7.7e-06 54.7 176 26.7
FAN28G2657 Fragaria x ananassa HOM05D000051 ORTHO05D000015 7.7e-06 54.7 144 30.6
Gohir.D02G052500 Gossypium hirsutum HOM05D000051 ORTHO05D000015 7.7e-06 54.7 139 31.7
Gorai.005G058000 Gossypium raimondii HOM05D000051 ORTHO05D000015 7.7e-06 54.7 139 31.7
Lj5g0023504 Lotus japonicus HOM05D000051 ORTHO05D000015 7.7e-06 54.7 172 32.0
PGR042G0007 Punica granatum HOM05D000051 ORTHO05D000015 7.7e-06 54.7 170 27.6
Sopen07g032410 Solanum pennellii HOM05D000051 ORTHO05D000015 7.7e-06 54.7 152 32.9
BcaC06g33876 Brassica carinata HOM05D000051 ORTHO05D000015 1.0e-05 54.3 153 32.0
A01p17590 Brassica napus HOM05D000051 ORTHO05D000015 1.0e-05 54.3 175 30.3
CSS0022872 Camellia sinensis var. sinensis HOM05D000051 ORTHO05D000015 1.0e-05 54.3 100 34.0
Carub.0007s2698 Capsella rubella HOM05D000051 ORTHO05D000015 1.0e-05 54.3 161 32.3
Carub.0007s3762 Capsella rubella HOM05D000689 ORTHO05D000015 1.0e-05 54.3 170 27.6
CARHR169580 Cardamine hirsuta HOM05D000689 ORTHO05D000015 1.0e-05 54.3 142 31.0
AUR62027762 Chenopodium quinoa HOM05D000051 ORTHO05D000493 1.0e-05 54.3 183 27.9
Haze_13435 Corylus avellana HOM05D001396 ORTHO05D000493 1.0e-05 54.3 141 32.6
CsaV3_6G015600 Cucumis sativus L. HOM05D001396 ORTHO05D000493 1.0e-05 54.3 205 27.3
DCAR_012983 Daucus carota HOM05D001396 ORTHO05D000493 1.0e-05 54.3 199 27.1
Thhalv10006442m.g Eutrema salsugineum HOM05D000689 ORTHO05D000015 1.0e-05 54.3 133 34.6
MD08G1193400 Malus domestica HOM05D000051 ORTHO05D000015 1.0e-05 54.3 170 31.2
Solyc04g072360.2 Solanum lycopersicum HOM05D005268 ORTHO05D000493 1.0e-05 54.3 203 25.6
SGA_v2.0_scaffold15G07283 Striga asiatica HOM05D000051 ORTHO05D000015 1.0e-05 54.3 170 28.8
vmacro11765 Vaccinium macrocarpon HOM05D000264 ORTHO05D000152 1.0e-05 54.3 145 31.7


User provided reference genes

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