Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.L03273 Eucalyptus grandis HOM05D003466 ORTHO05D004102 8.6e-97 357.5 248 100.0
Eucgr.E01598 Eucalyptus grandis HOM05D003466 ORTHO05D004102 3.6e-79 298.9 385 64.2
DCAR_004345 Daucus carota HOM05D003466 ORTHO05D004102 1.5e-64 250.4 385 54.5
Dinv25045 Davidia involucrata HOM05D003466 ORTHO05D004102 1.9e-64 250.0 385 56.9
Hma1.2p1_0106F.1_g051170 Hydrangea macrophylla HOM05D003466 ORTHO05D004102 1.2e-63 247.3 385 55.1
Eucgr.J03113 Eucalyptus grandis HOM05D003466 ORTHO05D004102 1.6e-63 246.9 385 57.4
TAR623G0841 Trochodendron aralioides HOM05D003466 ORTHO05D004102 4.7e-63 245.4 384 56.8
DCAR_012262 Daucus carota HOM05D003466 ORTHO05D004102 6.2e-63 245.0 379 54.4
PGR142G0405 Punica granatum HOM05D003466 ORTHO05D004102 6.2e-63 245.0 385 49.9
Dinv05554 Davidia involucrata HOM05D003466 ORTHO05D004102 5.2e-62 241.9 385 55.6
Rhsim09G0189500 Rhododendron simsii HOM05D003466 ORTHO05D004102 2.6e-61 239.6 384 55.5
MSTRG.150 Avicennia marina HOM05D003466 ORTHO05D004102 2.2e-60 236.5 384 54.2
Nn1g00582 Nelumbo nucifera HOM05D003466 ORTHO05D004102 4.9e-60 235.3 385 56.1
Nn1g06321 Nelumbo nucifera HOM05D003466 ORTHO05D004102 4.9e-60 235.3 379 57.0
MBI14_g30653_MAGBIO Magnolia biondii HOM05D003466 ORTHO05D004102 8.4e-60 234.6 384 54.9
Actinidia38929 Actinidia chinensis HOM05D003466 ORTHO05D004102 1.4e-59 233.8 379 55.7
vmacro10385 Vaccinium macrocarpon HOM05D003466 ORTHO05D004102 1.9e-59 233.4 384 55.7
QL06p022006 Quercus lobata HOM05D003466 ORTHO05D004102 2.4e-59 233.0 384 54.9
Haze_21188 Corylus avellana HOM05D003466 ORTHO05D004102 3.2e-59 232.6 383 51.7
CiPaw.15G127600 Carya illinoinensis HOM05D003466 ORTHO05D004102 9.2e-59 231.1 383 51.2
CSS0012966 Camellia sinensis var. sinensis HOM05D003466 ORTHO05D004102 2.1e-58 229.9 385 51.9
CSS0029529 Camellia sinensis var. sinensis HOM05D003466 ORTHO05D004102 2.1e-58 229.9 385 51.9
MELO3C008863.2 Cucumis melo HOM05D003466 ORTHO05D004102 3.5e-58 229.2 385 49.6
Dinv13777 Davidia involucrata HOM05D003466 ORTHO05D004102 1.7e-57 226.9 207 86.0
CsaV3_4G031590 Cucumis sativus L. HOM05D003466 ORTHO05D004102 6.6e-57 224.9 385 51.9
Gohir.A11G229400 Gossypium hirsutum HOM05D003466 ORTHO05D004102 6.6e-57 224.9 385 53.8
Gohir.D11G241400 Gossypium hirsutum HOM05D003466 ORTHO05D004102 6.6e-57 224.9 385 53.8
Gorai.007G255500 Gossypium raimondii HOM05D003466 ORTHO05D004102 6.6e-57 224.9 385 53.8
ClCG04G004740 Citrullus lanatus HOM05D003466 ORTHO05D004102 1.1e-56 224.2 385 48.1
Psat7g075240 Pisum sativum HOM05D003466 ORTHO05D004102 2.5e-56 223.0 384 48.7
MSTRG.8394 Avicennia marina HOM05D003466 ORTHO05D004102 1.2e-55 220.7 386 52.6
SalBow7G4471 Salvia bowleyana HOM05D003466 ORTHO05D004102 1.6e-55 220.3 386 52.3
MD15G1341800 Malus domestica HOM05D003466 ORTHO05D004102 2.1e-55 219.9 376 54.3
Prupe.4G226700 Prunus persica HOM05D003466 ORTHO05D004102 2.4e-54 216.5 385 52.5
Phvul.003G051500 Phaseolus vulgaris HOM05D003466 ORTHO05D004102 5.3e-54 215.3 385 53.0
Haze_22082 Corylus avellana HOM05D003466 ORTHO05D004102 9.0e-54 214.5 206 76.2
Migut.F01214 Erythranthe guttata HOM05D003466 ORTHO05D004102 2.6e-53 213.0 386 50.5
CSS0032791 Camellia sinensis var. sinensis HOM05D003466 ORTHO05D004102 3.4e-53 212.6 365 52.6
CSS0047344 Camellia sinensis var. sinensis HOM05D003466 ORTHO05D004102 3.4e-53 212.6 365 52.6
TPR.G11896 Trifolium pratense HOM05D003466 ORTHO05D004102 3.4e-53 212.6 385 46.0
PSO339G1378 Papaver somniferum HOM05D003466 ORTHO05D004102 5.8e-53 211.8 204 81.9
VMungo0251G3008 Vigna mungo HOM05D003466 ORTHO05D004102 5.8e-53 211.8 208 74.5
PSO063G0954 Papaver somniferum HOM05D003466 ORTHO05D004102 1.7e-52 210.3 204 82.4
Sed0012489 Sechium edule HOM05D003466 ORTHO05D004102 1.7e-52 210.3 385 47.0
FAN13G2307 Fragaria x ananassa HOM05D003466 ORTHO05D004102 2.2e-52 209.9 381 49.6
Cc00_g13080 Coffea canephora HOM05D003466 ORTHO05D004102 2.9e-52 209.5 388 52.8
Prupe.6G162200 Prunus persica HOM05D003466 ORTHO05D004102 3.8e-52 209.1 385 52.2
Peaxi162Scf00071g00424 Petunia axillaris HOM05D003466 ORTHO05D004102 6.4e-52 208.4 385 52.2
Thecc.05G242600 Theobroma cacao HOM05D003466 ORTHO05D004102 6.4e-52 208.4 386 52.6
Duzib106G0204 Durio zibethinus HOM05D003466 ORTHO05D004102 1.4e-51 207.2 385 51.7
MD01G1001200 Malus domestica HOM05D003466 ORTHO05D004102 1.9e-51 206.8 375 51.7
Potri.019G039900 Populus trichocarpa HOM05D003466 ORTHO05D004102 1.9e-51 206.8 388 51.5
Glyma.05G151500 Glycine max HOM05D003466 ORTHO05D004102 1.2e-50 204.1 385 47.5
Atru.chr7.542 Acer truncatum HOM05D003466 ORTHO05D004102 2.7e-50 203.0 385 51.2
THA.LOC104802883 Tarenaya hassleriana HOM05D003466 ORTHO05D004102 3.5e-50 202.6 385 51.2
Glyma.08G108300 Glycine max HOM05D003466 ORTHO05D004102 4.6e-50 202.2 384 47.1
THA.LOC104820792 Tarenaya hassleriana HOM05D003466 ORTHO05D004102 4.6e-50 202.2 384 50.8
Ciclev10020229m.g Citrus clementina HOM05D003466 ORTHO05D004102 6.0e-50 201.8 385 51.9
Sed0007742 Sechium edule HOM05D003466 ORTHO05D004102 7.8e-50 201.4 385 49.6
HPP92_009864 Vanilla planifolia HOM05D003466 ORTHO05D004102 7.8e-50 201.4 205 82.0
Medtr8g083140 Medicago truncatula HOM05D003466 ORTHO05D004102 2.3e-49 199.9 384 50.5
Duzib128G1823 Durio zibethinus HOM05D003466 ORTHO05D004102 3.3e-48 196.1 385 50.6
Lj1C1073T4 Lonicera japonica HOM05D003466 ORTHO05D004102 4.3e-48 195.7 212 78.8
Lj1C1073T5 Lonicera japonica HOM05D003466 ORTHO05D004102 2.8e-47 193.0 209 78.9
RcHm_v2.0_Chr2g0119581 Rosa chinensis HOM05D003466 ORTHO05D004102 4.8e-47 192.2 381 47.8
unitig_22.g5474 Utricularia gibba HOM05D003466 ORTHO05D004102 8.1e-47 191.4 385 48.6
CARHR195220 Cardamine hirsuta HOM05D003466 ORTHO05D004102 1.1e-46 191.0 386 48.4
ATR0697G059 Amborella trichopoda HOM05D003466 ORTHO05D004102 1.8e-46 190.3 383 50.7
FAN18G1357 Fragaria x ananassa HOM05D003466 ORTHO05D004102 1.8e-46 190.3 370 48.9
RcHm_v2.0_Chr7g0222731 Rosa chinensis HOM05D003466 ORTHO05D004102 1.8e-46 190.3 384 48.4
FvH4_5g26300 Fragaria vesca HOM05D003466 ORTHO05D004102 4.0e-46 189.1 381 47.5
SGA_v2.0_scaffold44G16596 Striga asiatica HOM05D003466 ORTHO05D004102 2.0e-45 186.8 386 48.2
QL04p079149 Quercus lobata HOM05D003466 ORTHO05D004102 4.5e-45 185.7 384 50.0
FAN15G3298 Fragaria x ananassa HOM05D003466 ORTHO05D004102 2.2e-44 183.3 212 58.5
Cpa.g.sc2.346 Carica papaya HOM05D003466 ORTHO05D004102 2.9e-44 183.0 383 49.6
TWI34G0391 Tripterygium wilfordii HOM05D003466 ORTHO05D004102 4.9e-44 182.2 385 47.5
LjContig00357g0023779 Lotus japonicus HOM05D003466 ORTHO05D004102 8.4e-44 181.4 385 44.7
FAN15G1350 Fragaria x ananassa HOM05D003466 ORTHO05D004102 1.1e-43 181.0 381 47.5
Potri.013G065600 Populus trichocarpa HOM05D003466 ORTHO05D004102 3.2e-43 179.5 387 49.4
CANSAT25G0815 Cannabis sativa HOM05D003466 ORTHO05D004102 5.4e-43 178.7 385 46.2
Manes.09G136800 Manihot esculenta HOM05D003466 ORTHO05D004102 7.1e-43 178.3 381 48.6
Lsat_1_v5_gn_1_55421 Lactuca sativa HOM05D003466 ORTHO05D004102 1.2e-42 177.6 385 48.8
FAN27G0165 Fragaria x ananassa HOM05D003466 ORTHO05D004102 1.6e-42 177.2 207 60.9
CANSAT80G2535 Cannabis sativa HOM05D003466 ORTHO05D004102 2.7e-42 176.4 385 45.7
SEGI_04842 Sequoiadendron giganteum HOM05D003466 ORTHO05D004102 4.6e-42 175.6 386 47.7
unitig_8.g3898 Utricularia gibba HOM05D003466 ORTHO05D004102 7.9e-42 174.9 381 47.8
Sabra19G0050200 Salix brachista HOM05D003466 ORTHO05D004102 8.7e-41 171.4 388 41.5
Ca_17998_v3 Cicer arietinum L. HOM05D003466 ORTHO05D004102 4.3e-40 169.1 385 40.3
Lalb_Chr12g0205661 Lupinus albus HOM05D003466 ORTHO05D004102 9.6e-40 167.9 384 40.1
HanXRQChr01g0026931 Helianthus annuus HOM05D003466 ORTHO05D004102 1.6e-39 167.2 385 46.2
Aa31LG11G11660 Aethionema arabicum HOM05D003466 ORTHO05D004102 1.4e-38 164.1 386 45.9
Lj4g0028177 Lotus japonicus HOM05D003466 ORTHO05D004102 1.4e-38 164.1 381 48.3
Carub.0006s1611 Capsella rubella HOM05D003466 ORTHO05D004102 4.0e-38 162.5 385 44.9
ECA248G3292 Erigeron canadensis HOM05D003466 ORTHO05D004102 4.0e-38 162.5 389 45.8
AT5G17900 Arabidopsis thaliana HOM05D003466 ORTHO05D004102 4.5e-37 159.1 386 44.8
Hund15775 Selenicereus undatus HOM05D003466 ORTHO05D004102 4.5e-37 159.1 385 47.8
SEGI_19842 Sequoiadendron giganteum HOM05D003466 ORTHO05D004102 9.9e-37 157.9 386 46.4
SEGI_30994 Sequoiadendron giganteum HOM05D003466 ORTHO05D004102 9.9e-37 157.9 386 46.4
Oeu046439.1 Olea europaea HOM05D003466 ORTHO05D004102 1.3e-36 157.5 344 37.2
Os02g0280100 Oryza sativa ssp. japonica HOM05D003466 ORTHO05D004102 1.7e-36 157.1 384 42.7
AT4G08580 Arabidopsis thaliana HOM05D003466 ORTHO05D004102 2.2e-36 156.8 386 44.3
Pp3c6_19380 Physcomitrium patens HOM05D003466 ORTHO05D004102 2.2e-36 156.8 380 45.8
EL10Ac2g02698 Beta vulgaris HOM05D003466 ORTHO05D004102 5.5e-35 152.1 386 45.6
Sc10g0003130 Simmondsia chinensis HOM05D003466 ORTHO05D004102 5.5e-35 152.1 380 48.2
Mapoly0065s0046 Marchantia polymorpha HOM05D003466 ORTHO05D004102 2.7e-34 149.8 377 45.6
Solyc01g100500.3 Solanum lycopersicum HOM05D003466 ORTHO05D004102 2.7e-34 149.8 385 41.0
AL6G29010 Arabidopsis lyrata HOM05D003466 ORTHO05D004102 6.0e-34 148.7 386 43.8
Sabra15G0065800 Salix brachista HOM05D003466 ORTHO05D004102 6.0e-34 148.7 209 56.5
Thhalv10013587m.g Eutrema salsugineum HOM05D003466 ORTHO05D004102 7.9e-34 148.3 386 38.3
AUR62032478 Chenopodium quinoa HOM05D003466 ORTHO05D004102 1.8e-33 147.1 208 69.7
COL.COLO4_23028 Corchorus olitorius HOM05D003466 ORTHO05D004102 1.8e-33 147.1 225 65.8
Nitab4.5_0005883g0020 Nicotiana tabacum HOM05D003466 ORTHO05D004102 6.7e-33 145.2 385 42.3
CDE06G0321 Ceratophyllum demersum HOM05D003466 ORTHO05D004102 2.5e-32 143.3 259 39.8
CAN.G1076.6 Capsicum annuum HOM05D003466 ORTHO05D004102 4.3e-32 142.5 385 44.7
Nitab4.5_0000368g0060 Nicotiana tabacum HOM05D003466 ORTHO05D004102 4.3e-32 142.5 385 42.6
Oeu012666.1 Olea europaea HOM05D003466 ORTHO05D004102 4.0e-30 136.0 220 54.5
Sopen01g044010 Solanum pennellii HOM05D003466 ORTHO05D004102 5.3e-30 135.6 385 39.5
AagrBONN_evm.TU.Sc2ySwM_362.1620 Anthoceros agrestis HOM05D003466 ORTHO05D004102 6.9e-30 135.2 200 68.5
arahy.Tifrunner.gnm1.ann1.WPUK1Z Arachis hypogaea HOM05D003466 ORTHO05D004102 6.9e-30 135.2 386 42.2
PGSC0003DMG400002770 Solanum tuberosum HOM05D003466 ORTHO05D004102 9.0e-30 134.8 385 40.3
arahy.Tifrunner.gnm1.ann1.GMJ520 Arachis hypogaea HOM05D003466 ORTHO05D004102 1.2e-29 134.4 382 41.1
BraA01t03144Z Brassica rapa HOM05D003466 ORTHO05D004102 2.0e-29 133.7 195 53.8
Lalb_Chr07g0186841 Lupinus albus HOM05D003466 ORTHO05D004102 3.4e-29 132.9 383 36.6
Aqoxy1G00514 Aquilegia oxysepala HOM05D003466 ORTHO05D004102 7.6e-29 131.7 92 81.5
BraA03t10180Z Brassica rapa HOM05D003466 ORTHO05D004102 7.6e-29 131.7 372 37.6
Peaxi162Scf00673g00432 Petunia axillaris HOM05D003466 ORTHO05D004102 7.6e-29 131.7 385 40.3
Sp6g26370 Schrenkiella parvula HOM05D003466 ORTHO05D004102 8.4e-28 128.3 386 41.2
Zm00001eb196610 Zea mays HOM05D003466 ORTHO05D004102 1.1e-27 127.9 381 39.6
COL.COLO4_23021 Corchorus olitorius HOM05D003466 ORTHO05D000454 4.2e-27 125.9 209 66.5
BcaB01g04922 Brassica carinata HOM05D003466 ORTHO05D004102 7.1e-27 125.2 371 37.7
A03p08540 Brassica napus HOM05D003466 ORTHO05D004102 1.6e-26 124.0 371 36.4
BcaB08g36728 Brassica carinata HOM05D003466 ORTHO05D004102 6.1e-26 122.1 383 34.7
Cfa017016 Carpinus fangiana HOM05D003466 ORTHO05D004102 6.1e-26 122.1 246 39.4
FAN01G2678 Fragaria x ananassa HOM05D003466 ORTHO05D004102 3.9e-25 119.4 246 37.4
BcaC04g18745 Brassica carinata HOM05D003466 ORTHO05D004102 1.1e-24 117.9 245 47.8
GSVIVG01029154001 Vitis vinifera HOM05D003466 ORTHO05D004102 1.5e-24 117.5 295 35.3
COL.COLO4_29543 Corchorus olitorius HOM05D003466 ORTHO05D004102 5.7e-24 115.5 223 58.3
CBR_g12232 Chara braunii HOM05D003466 ORTHO05D004102 7.4e-24 115.2 392 40.6
C09p59160 Brassica napus HOM05D003466 ORTHO05D004102 1.1e-22 111.3 396 30.8
BolC9t58759H Brassica oleracea HOM05D003466 ORTHO05D004102 1.1e-22 111.3 396 30.8
Sp3g32640 Schrenkiella parvula HOM05D003466 ORTHO05D004102 1.4e-22 110.9 197 51.8
Ah.12g064750 Amaranthus hybridus HOM05D003466 ORTHO05D004102 5.3e-22 109.0 254 34.6
Carub.0008s1310 Capsella rubella HOM05D003466 ORTHO05D004102 5.9e-21 105.5 205 57.1
AUR62042249 Chenopodium quinoa HOM05D003466 ORTHO05D004102 5.9e-21 105.5 210 37.6
BraA10t44221Z Brassica rapa HOM05D003466 ORTHO05D004102 1.3e-20 104.4 395 29.9
vmacro09137 Vaccinium macrocarpon HOM05D003466 ORTHO05D004102 2.2e-20 103.6 115 53.9
SMO364G0903 Selaginella moellendorffii HOM05D003466 ORTHO05D004102 3.8e-20 102.8 208 63.0
C03p09970 Brassica napus HOM05D003466 ORTHO05D004102 6.5e-20 102.1 372 35.2
CDE06G0675 Ceratophyllum demersum HOM05D003466 ORTHO05D004102 8.5e-20 101.7 69 79.7
Thhalv10009152m.g Eutrema salsugineum HOM05D003466 ORTHO05D004102 1.9e-19 100.5 85 68.2
Ah.12g064760 Amaranthus hybridus HOM05D003466 ORTHO05D004102 3.2e-19 99.8 207 59.9
A10p21590 Brassica napus HOM05D003466 ORTHO05D004102 3.2e-19 99.8 396 29.8
Thhalv10023970m.g Eutrema salsugineum HOM05D003466 ORTHO05D004102 3.2e-19 99.8 83 69.9
QL04p079025 Quercus lobata HOM05D003466 ORTHO05D004102 4.2e-19 99.4 83 71.1
Rhsim07G0176000 Rhododendron simsii HOM05D003466 ORTHO05D004102 1.1e-16 91.3 216 38.0
CARHR265890 Cardamine hirsuta HOM05D003466 ORTHO05D004102 1.5e-16 90.9 190 44.2
BcaB08g34851 Brassica carinata HOM05D003466 ORTHO05D004102 9.7e-16 88.2 198 46.0
BcaB01g05163 Brassica carinata HOM05D003466 ORTHO05D004102 3.7e-15 86.3 258 31.0
C07p24050 Brassica napus HOM05D003466 ORTHO05D004102 3.7e-15 86.3 210 38.1
BolC3t13485H Brassica oleracea HOM05D003466 ORTHO05D004102 3.7e-15 86.3 258 31.0
BcaB03g14395 Brassica carinata HOM05D003466 ORTHO05D004102 4.8e-15 85.9 210 37.6
BolC7t42929H Brassica oleracea HOM05D003466 ORTHO05D004102 4.8e-15 85.9 210 37.6
Lj1g0005079 Lotus japonicus HOM05D003466 ORTHO05D004102 2.0e-13 80.5 97 54.6
Lj1A1073T40 Lonicera japonica HOM05D003466 ORTHO05D004102 3.4e-13 79.7 38 92.1
COL.COLO4_28634 Corchorus olitorius HOM05D003466 ORTHO05D004102 2.2e-12 77.0 47 76.6
Nitab4.5_0000841g0090 Nicotiana tabacum HOM05D003466 ORTHO05D004102 6.5e-12 75.5 246 47.6
Atru.chr1.1444 Acer truncatum HOM05D003466 ORTHO05D004102 8.5e-12 75.1 46 87.0
COL.COLO4_17204 Corchorus olitorius HOM05D003466 ORTHO05D004102 8.5e-12 75.1 85 60.0
Thhalv10023093m.g Eutrema salsugineum HOM05D003466 ORTHO05D004102 4.7e-10 69.3 319 39.8
BraA07t29363Z Brassica rapa HOM05D003466 ORTHO05D004102 1.0e-09 68.2 194 44.8
vmacro20986 Vaccinium macrocarpon HOM05D003466 ORTHO05D004102 3.0e-09 66.6 72 54.2
Os06g0335101 Oryza sativa ssp. japonica HOM05D003466 ORTHO05D004102 1.5e-08 64.3 98 42.9
HanXRQChr11g0348041 Helianthus annuus HOM05D003466 ORTHO05D004102 1.8e-06 57.4 37 86.5
C02p09480 Brassica napus HOM05D003466 ORTHO05D004102 2.4e-06 57.0 33 72.7
Ah.10g029710 Amaranthus hybridus HOM05D003466 ORTHO05D004102 4.1e-06 56.2 47 48.9


User provided reference genes

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