Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.L03169 Eucalyptus grandis HOM05D004124 ORTHO05D004779 1.1e-89 333.2 165 100.0
CANSAT01G0376 Cannabis sativa HOM05D004124 ORTHO05D004779 2.8e-19 99.4 103 52.4
Duzib251G0523 Durio zibethinus HOM05D004124 ORTHO05D004779 8.1e-19 97.8 162 46.3
Eucgr.H04636 Eucalyptus grandis HOM05D004124 ORTHO05D004779 3.1e-18 95.9 166 46.4
PGR102G1761 Punica granatum HOM05D004124 ORTHO05D004779 5.3e-18 95.1 103 51.5
Gorai.012G176300 Gossypium raimondii HOM05D004124 ORTHO05D004779 6.9e-18 94.7 103 50.5
QL03p052498 Quercus lobata HOM05D004124 ORTHO05D004779 1.2e-17 94.0 103 48.5
Manes.12G010400 Manihot esculenta HOM05D004124 ORTHO05D004779 1.5e-17 93.6 103 49.5
Gohir.A04G140100 Gossypium hirsutum HOM05D004124 ORTHO05D004779 3.4e-17 92.4 103 49.5
Gohir.D04G183300 Gossypium hirsutum HOM05D004124 ORTHO05D004779 4.5e-17 92.0 105 49.5
arahy.Tifrunner.gnm1.ann1.B7Q2TL Arachis hypogaea HOM05D004124 ORTHO05D004779 5.8e-17 91.7 103 50.5
TWI18G0339 Tripterygium wilfordii HOM05D004124 ORTHO05D004779 5.8e-17 91.7 103 47.6
Prupe.1G225000 Prunus persica HOM05D004124 ORTHO05D004779 7.6e-17 91.3 103 48.5
COL.COLO4_20412 Corchorus olitorius HOM05D004124 ORTHO05D004779 9.9e-17 90.9 103 49.5
Ciclev10033913m.g Citrus clementina HOM05D004124 ORTHO05D004779 1.7e-16 90.1 104 49.0
Duzib268G1736 Durio zibethinus HOM05D004124 ORTHO05D004779 1.7e-16 90.1 105 48.6
CiPaw.05G108900 Carya illinoinensis HOM05D004124 ORTHO05D004779 2.2e-16 89.7 103 47.6
Hund25468 Selenicereus undatus HOM05D004124 ORTHO05D004779 2.2e-16 89.7 104 51.9
DCAR_026459 Daucus carota HOM05D004124 ORTHO05D004779 2.9e-16 89.4 218 30.3
RcHm_v2.0_Chr4g0430131 Rosa chinensis HOM05D004124 ORTHO05D004779 2.9e-16 89.4 103 47.6
Dinv10949 Davidia involucrata HOM05D004124 ORTHO05D004779 4.9e-16 88.6 103 50.5
MBI13_g33572_MAGBIO Magnolia biondii HOM05D004124 ORTHO05D004779 4.9e-16 88.6 130 43.8
Potri.001G056000 Populus trichocarpa HOM05D004124 ORTHO05D004779 4.9e-16 88.6 103 46.6
arahy.Tifrunner.gnm1.ann1.JS6392 Arachis hypogaea HOM05D004124 ORTHO05D004779 6.4e-16 88.2 103 46.6
FAN22G1987 Fragaria x ananassa HOM05D004124 ORTHO05D004779 1.4e-15 87.0 103 46.6
GSVIVG01010495001 Vitis vinifera HOM05D004124 ORTHO05D004779 1.4e-15 87.0 103 49.5
FAN07G1336 Fragaria x ananassa HOM05D004124 ORTHO05D004779 3.2e-15 85.9 126 42.1
FAN17G0270 Fragaria x ananassa HOM05D004124 ORTHO05D004779 4.2e-15 85.5 126 41.3
FvH4_4g23660 Fragaria vesca HOM05D004124 ORTHO05D004779 7.1e-15 84.7 103 45.6
FAN12G0357 Fragaria x ananassa HOM05D004124 ORTHO05D004779 7.1e-15 84.7 103 45.6
Gorai.005G166600 Gossypium raimondii HOM05D004124 ORTHO05D004779 9.3e-15 84.3 103 47.6
CSS0020706 Camellia sinensis var. sinensis HOM05D004124 ORTHO05D004779 2.1e-14 83.2 103 46.6
Thecc.02G206600 Theobroma cacao HOM05D004124 ORTHO05D004779 2.1e-14 83.2 96 49.0
CiPaw.06G103200 Carya illinoinensis HOM05D004124 ORTHO05D004779 2.7e-14 82.8 103 45.6
Haze_12426 Corylus avellana HOM05D004124 ORTHO05D004779 2.7e-14 82.8 103 45.6
Atru.chr11.2334 Acer truncatum HOM05D004124 ORTHO05D004779 3.5e-14 82.4 104 48.1
Gohir.A03G125700 Gossypium hirsutum HOM05D004124 ORTHO05D004779 3.5e-14 82.4 103 46.6
Gohir.D02G148500 Gossypium hirsutum HOM05D004124 ORTHO05D004779 3.5e-14 82.4 105 46.7
Oeu049141.1 Olea europaea HOM05D004124 ORTHO05D004779 3.5e-14 82.4 103 44.7
Sopen05g010890 Solanum pennellii HOM05D004124 ORTHO05D004779 3.5e-14 82.4 105 44.8
ClCG11G013590 Citrullus lanatus HOM05D004124 ORTHO05D004779 4.6e-14 82.0 101 44.6
Sabra01G0040400 Salix brachista HOM05D004124 ORTHO05D004779 4.6e-14 82.0 103 44.7
PGSC0003DMG400034304 Solanum tuberosum HOM05D004124 ORTHO05D004779 4.6e-14 82.0 105 44.8
TAR626G1310 Trochodendron aralioides HOM05D004124 ORTHO05D004779 4.6e-14 82.0 103 45.6
Rhsim12G0025300 Rhododendron simsii HOM05D004124 ORTHO05D004779 6.0e-14 81.6 103 46.6
Sabra03G0126200 Salix brachista HOM05D004124 ORTHO05D004779 6.0e-14 81.6 103 45.6
Lj6g0002227 Lotus japonicus HOM05D004124 ORTHO05D004779 7.9e-14 81.3 103 44.7
Actinidia09646 Actinidia chinensis HOM05D004124 ORTHO05D004779 1.0e-13 80.9 100 46.0
DCAR_024098 Daucus carota HOM05D004124 ORTHO05D004779 1.3e-13 80.5 163 41.7
Duzib248G0967 Durio zibethinus HOM05D004124 ORTHO05D004779 1.3e-13 80.5 103 47.6
Lj3A1069T45 Lonicera japonica HOM05D004124 ORTHO05D004779 1.3e-13 80.5 109 42.2
MD16G1120200 Malus domestica HOM05D004124 ORTHO05D004779 1.3e-13 80.5 104 46.2
Potri.003G172500 Populus trichocarpa HOM05D004124 ORTHO05D004779 1.3e-13 80.5 103 45.6
Solyc05g015500.4 Solanum lycopersicum HOM05D004124 ORTHO05D004779 1.3e-13 80.5 105 43.8
Actinidia30642 Actinidia chinensis HOM05D004124 ORTHO05D004779 2.3e-13 79.7 126 41.3
MSTRG.500 Avicennia marina HOM05D004124 ORTHO05D004779 3.0e-13 79.3 103 42.7
MELO3C011859.2 Cucumis melo HOM05D004124 ORTHO05D004779 3.0e-13 79.3 103 41.7
CsaV3_5G030210 Cucumis sativus L. HOM05D004124 ORTHO05D004779 3.0e-13 79.3 103 41.7
Thhalv10018870m.g Eutrema salsugineum HOM05D004124 ORTHO05D004779 3.0e-13 79.3 103 45.6
Actinidia08066 Actinidia chinensis HOM05D004124 ORTHO05D004779 3.9e-13 79.0 103 46.6
Cc11_g16980 Coffea canephora HOM05D004124 ORTHO05D004779 3.9e-13 79.0 103 44.7
TPR.G17791 Trifolium pratense HOM05D004124 ORTHO05D004779 3.9e-13 79.0 103 43.7
vmacro01057 Vaccinium macrocarpon HOM05D004124 ORTHO05D004779 3.9e-13 79.0 101 46.5
Nn5g26967 Nelumbo nucifera HOM05D004124 ORTHO05D004779 6.7e-13 78.2 103 44.7
CSS0002767 Camellia sinensis var. sinensis HOM05D004124 ORTHO05D004779 1.1e-12 77.4 106 44.3
CAN.G163.7 Capsicum annuum HOM05D004124 ORTHO05D004779 1.1e-12 77.4 103 43.7
Carub.0002s1361 Capsella rubella HOM05D004124 ORTHO05D004779 1.9e-12 76.6 103 44.7
AT1G67325 Arabidopsis thaliana HOM05D004124 ORTHO05D004779 2.5e-12 76.3 103 43.7
Hund06093 Selenicereus undatus HOM05D004124 ORTHO05D004779 2.5e-12 76.3 104 44.2
AUR62005628 Chenopodium quinoa HOM05D004124 ORTHO05D004779 3.3e-12 75.9 104 45.2
Medtr3g085190 Medicago truncatula HOM05D004124 ORTHO05D004779 3.3e-12 75.9 103 42.7
Psat5g096680 Pisum sativum HOM05D004124 ORTHO05D004779 3.3e-12 75.9 103 41.7
TAR383G0859 Trochodendron aralioides HOM05D004124 ORTHO05D004779 3.3e-12 75.9 103 42.7
Oeu006524.1 Olea europaea HOM05D004124 ORTHO05D004779 4.3e-12 75.5 114 40.4
AUR62028920 Chenopodium quinoa HOM05D004124 ORTHO05D004779 5.6e-12 75.1 104 45.2
Nn8g41237 Nelumbo nucifera HOM05D004124 ORTHO05D004779 5.6e-12 75.1 128 39.1
THA.LOC104825500 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 5.6e-12 75.1 112 42.0
AL2G25860 Arabidopsis lyrata HOM05D004124 ORTHO05D004779 7.4e-12 74.7 103 42.7
Ca_16453_v3 Cicer arietinum L. HOM05D004124 ORTHO05D004779 7.4e-12 74.7 103 41.7
Lsat_1_v5_gn_8_147801 Lactuca sativa HOM05D004124 ORTHO05D004779 7.4e-12 74.7 132 36.4
Nitab4.5_0003900g0010 Nicotiana tabacum HOM05D004124 ORTHO05D004779 7.4e-12 74.7 103 42.7
Sp5g22270 Schrenkiella parvula HOM05D004124 ORTHO05D004779 7.4e-12 74.7 104 44.2
MSTRG.8009 Avicennia marina HOM05D004124 ORTHO05D004779 9.6e-12 74.3 103 44.7
Lj6A827G48 Lonicera japonica HOM05D004124 ORTHO05D004779 9.6e-12 74.3 103 43.7
EL10Ac6g13513 Beta vulgaris HOM05D004124 ORTHO05D004779 1.3e-11 73.9 104 44.2
Peaxi162Scf00128g01335 Petunia axillaris HOM05D004124 ORTHO05D004779 1.6e-11 73.6 103 41.7
Sc04g0010190 Simmondsia chinensis HOM05D004124 ORTHO05D004779 1.6e-11 73.6 103 42.7
THA.LOC104807133 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 1.6e-11 73.6 100 44.0
Ah.03g136110 Amaranthus hybridus HOM05D004124 ORTHO05D004779 2.1e-11 73.2 104 44.2
Glyma.11G251300 Glycine max HOM05D004124 ORTHO05D004779 2.1e-11 73.2 103 43.7
Nitab4.5_0000861g0060 Nicotiana tabacum HOM05D004124 ORTHO05D004779 2.1e-11 73.2 103 42.7
HPP92_015269 Vanilla planifolia HOM05D004124 ORTHO05D004779 2.1e-11 73.2 103 40.8
Phvul.001G262500 Phaseolus vulgaris HOM05D004124 ORTHO05D004779 2.8e-11 72.8 126 38.9
Aa31sc584G20 Aethionema arabicum HOM05D004124 ORTHO05D004779 3.7e-11 72.4 103 41.7
Migut.K00950 Erythranthe guttata HOM05D004124 ORTHO05D004779 3.7e-11 72.4 103 38.8
Glyma.18G005700 Glycine max HOM05D004124 ORTHO05D004779 3.7e-11 72.4 103 41.7
unitig_749.g13306 Utricularia gibba HOM05D004124 ORTHO05D004779 4.8e-11 72.0 102 41.2
CARHR059820 Cardamine hirsuta HOM05D004124 ORTHO05D004779 6.2e-11 71.6 103 41.7
SGA_v2.0_scaffold391G50628 Striga asiatica HOM05D004124 ORTHO05D004779 6.2e-11 71.6 102 43.1
VMungo1383G0738 Vigna mungo HOM05D004124 ORTHO05D004779 8.1e-11 71.2 103 41.7
Lalb_Chr11g0075781 Lupinus albus HOM05D004124 ORTHO05D004779 1.1e-10 70.9 128 35.9
Manes.13G011200 Manihot esculenta HOM05D004124 ORTHO05D004779 1.4e-10 70.5 100 42.0
Sed0008103 Sechium edule HOM05D004124 ORTHO05D004779 1.8e-10 70.1 103 38.8
BcaB03g15346 Brassica carinata HOM05D004124 ORTHO05D004779 2.4e-10 69.7 104 41.3
ECA234G0541 Erigeron canadensis HOM05D004124 ORTHO05D004779 3.1e-10 69.3 103 39.8
PSO063G2768 Papaver somniferum HOM05D004124 ORTHO05D004779 4.0e-10 68.9 106 38.7
Sed0002251 Sechium edule HOM05D004124 ORTHO05D004779 5.3e-10 68.6 103 39.8
Lalb_Chr13g0294351 Lupinus albus HOM05D004124 ORTHO05D004779 6.9e-10 68.2 106 35.8
THA.LOC104807526 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 9.0e-10 67.8 100 42.0
PSO170G5699 Papaver somniferum HOM05D004124 ORTHO05D004779 1.2e-09 67.4 106 37.7
C06p38790 Brassica napus HOM05D004124 ORTHO05D004779 1.5e-09 67.0 104 40.4
Lsat_1_v5_gn_4_400 Lactuca sativa HOM05D004124 ORTHO05D004779 1.5e-09 67.0 100 40.0
A07p32620 Brassica napus HOM05D004124 ORTHO05D004779 7.6e-09 64.7 104 40.4
BraA07t30886Z Brassica rapa HOM05D004124 ORTHO05D004779 7.6e-09 64.7 104 40.4
Pp3c4_8110 Physcomitrium patens HOM05D004124 ORTHO05D004779 7.6e-09 64.7 175 27.4
BolC6t38971H Brassica oleracea HOM05D004124 ORTHO05D004779 1.0e-08 64.3 104 39.4
Lalb_Chr08g0230601 Lupinus albus HOM05D004124 ORTHO05D004779 2.9e-08 62.8 127 34.6
Lalb_Chr07g0187111 Lupinus albus HOM05D004124 ORTHO05D004779 4.9e-08 62.0 106 34.9
Aqoxy7G02609 Aquilegia oxysepala HOM05D004124 ORTHO05D004779 1.9e-07 60.1 104 36.5
ATR0626G238 Amborella trichopoda HOM05D004124 ORTHO05D004779 2.5e-07 59.7 101 37.6
ECA233G0726 Erigeron canadensis HOM05D004124 ORTHO05D004779 2.5e-07 59.7 101 38.6
C06p42940 Brassica napus HOM05D004124 ORTHO05D004779 7.1e-07 58.2 102 38.2
BolC6t39143H Brassica oleracea HOM05D004124 ORTHO05D004779 7.1e-07 58.2 102 38.2
Eucgr.B03499 Eucalyptus grandis HOM05D004124 ORTHO05D004779 9.3e-07 57.8 45 60.0
HanXRQChr17g0569011 Helianthus annuus HOM05D004124 ORTHO05D004779 9.3e-07 57.8 102 34.3
HanXRQChr12g0372641 Helianthus annuus HOM05D004124 ORTHO05D004779 1.2e-06 57.4 160 36.2
Mapoly0005s0267 Marchantia polymorpha HOM05D004124 ORTHO05D004779 1.2e-06 57.4 106 29.2
HanXRQChr12g0361221 Helianthus annuus HOM05D004124 ORTHO05D004779 6.0e-06 55.1 160 35.6


User provided reference genes

Program Settings