Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.L03123 Eucalyptus grandis HOM05D006588 ORTHO05D008272 1.4e-255 885.9 508 100.0
Eucgr.C00929 Eucalyptus grandis HOM05D006588 ORTHO05D008272 8.8e-189 664.1 507 73.6
Manes.03G030400 Manihot esculenta HOM05D006588 ORTHO05D008272 1.1e-87 328.2 504 41.5
Thecc.09G094100 Theobroma cacao HOM05D006588 ORTHO05D008272 5.7e-87 325.9 509 40.7
Gohir.D06G069300 Gossypium hirsutum HOM05D006588 ORTHO05D008272 1.4e-85 321.2 504 41.9
Gorai.010G080900 Gossypium raimondii HOM05D006588 ORTHO05D008272 1.4e-85 321.2 504 41.9
Ciclev10008264m.g Citrus clementina HOM05D006588 ORTHO05D008272 2.5e-82 310.5 511 40.3
TAR636G2459 Trochodendron aralioides HOM05D006588 ORTHO05D008272 2.1e-81 307.4 506 37.9
Atru.chr7.1520 Acer truncatum HOM05D006588 ORTHO05D008272 4.6e-81 306.2 508 38.6
CSS0027625 Camellia sinensis var. sinensis HOM05D006588 ORTHO05D008272 6.1e-81 305.8 508 38.4
QL02p063459 Quercus lobata HOM05D006588 ORTHO05D008272 1.3e-80 304.7 509 38.9
Duzib150G1363 Durio zibethinus HOM05D006588 ORTHO05D008272 2.3e-80 303.9 511 39.5
Cfa003132 Carpinus fangiana HOM05D006588 ORTHO05D008272 5.7e-79 299.3 506 39.3
Dinv36733 Davidia involucrata HOM05D006588 ORTHO05D008272 9.7e-79 298.5 486 40.5
TWI34G1517 Tripterygium wilfordii HOM05D006588 ORTHO05D008272 5.3e-77 292.7 511 37.6
Lj4C316T0 Lonicera japonica HOM05D006588 ORTHO05D008272 6.5e-75 285.8 506 37.2
MSTRG.10583 Avicennia marina HOM05D006588 ORTHO05D008272 1.1e-74 285.0 509 36.7
Hma1.2p1_1074F.1_g254320 Hydrangea macrophylla HOM05D006588 ORTHO05D008272 9.4e-74 282.0 512 36.7
Migut.K00574 Erythranthe guttata HOM05D006588 ORTHO05D008272 1.6e-73 281.2 514 37.9
SalBow1G2363 Salvia bowleyana HOM05D006588 ORTHO05D008272 6.1e-73 279.3 509 38.3
SalBow1G2795 Salvia bowleyana HOM05D006588 ORTHO05D008272 6.1e-73 279.3 509 38.3
Lalb_Chr09g0331761 Lupinus albus HOM05D006588 ORTHO05D008272 7.9e-73 278.9 511 36.2
Cc06_g10980 Coffea canephora HOM05D006588 ORTHO05D008272 5.1e-72 276.2 509 36.0
Oeu018228.1 Olea europaea HOM05D006588 ORTHO05D008272 2.5e-71 273.9 520 36.3
ClCG11G012860 Citrullus lanatus HOM05D006588 ORTHO05D008272 7.4e-71 272.3 508 36.8
Rhsim05G0031800 Rhododendron simsii HOM05D006588 ORTHO05D008272 1.7e-70 271.2 506 36.2
Sc15g0003870 Simmondsia chinensis HOM05D006588 ORTHO05D008272 3.7e-70 270.0 510 35.3
CsaV3_5G029260 Cucumis sativus L. HOM05D006588 ORTHO05D008272 4.8e-70 269.6 508 36.6
Glyma.08G030700 Glycine max HOM05D006588 ORTHO05D008272 8.2e-70 268.9 508 35.4
Sed0004057 Sechium edule HOM05D006588 ORTHO05D008272 8.2e-70 268.9 509 37.1
CANSAT56G3648 Cannabis sativa HOM05D006588 ORTHO05D008272 1.1e-69 268.5 507 36.7
Nn6g35407 Nelumbo nucifera HOM05D006588 ORTHO05D008272 1.4e-69 268.1 500 35.2
TPR.G25442 Trifolium pratense HOM05D006588 ORTHO05D008272 5.3e-69 266.2 513 34.9
CANSAT56G2228 Cannabis sativa HOM05D006588 ORTHO05D008272 1.2e-68 265.0 507 36.5
MBI04_g06220_MAGBIO Magnolia biondii HOM05D006588 ORTHO05D008272 3.4e-68 263.5 509 36.3
THA.LOC104814599 Tarenaya hassleriana HOM05D006588 ORTHO05D008272 1.0e-67 261.9 507 35.1
HanXRQChr09g0238251 Helianthus annuus HOM05D006588 ORTHO05D008272 2.2e-67 260.8 521 35.7
ECA240G3150 Erigeron canadensis HOM05D006588 ORTHO05D008272 5.0e-67 259.6 511 35.6
VMungo0251G0425 Vigna mungo HOM05D006588 ORTHO05D008272 5.0e-67 259.6 509 34.4
Ca_17389_v3 Cicer arietinum L. HOM05D006588 ORTHO05D008272 1.1e-66 258.5 508 34.3
Gohir.A06G070700 Gossypium hirsutum HOM05D006588 ORTHO05D008272 9.4e-66 255.4 381 43.3
Lj4g0006334 Lotus japonicus HOM05D006588 ORTHO05D008272 3.6e-65 253.4 508 35.2
Phvul.002G305400 Phaseolus vulgaris HOM05D006588 ORTHO05D008272 4.7e-65 253.1 509 34.4
AT4G29420 Arabidopsis thaliana HOM05D006588 ORTHO05D008272 1.0e-64 251.9 513 34.5
AL7G22970 Arabidopsis lyrata HOM05D006588 ORTHO05D008272 3.9e-64 250.0 512 33.8
Carub.0007s1112 Capsella rubella HOM05D006588 ORTHO05D008272 3.9e-64 250.0 513 35.5
CANSAT56G0790 Cannabis sativa HOM05D006588 ORTHO05D008272 2.6e-63 247.3 474 36.7
Psat7g018800 Pisum sativum HOM05D006588 ORTHO05D008272 3.3e-63 246.9 516 33.3
BolC1t00966H Brassica oleracea HOM05D006588 ORTHO05D008272 4.4e-63 246.5 511 34.6
CiPaw.03G219600 Carya illinoinensis HOM05D006588 ORTHO05D008272 7.4e-63 245.7 382 42.1
Lsat_1_v5_gn_7_39041 Lactuca sativa HOM05D006588 ORTHO05D008272 9.7e-63 245.4 520 34.2
A01p08610 Brassica napus HOM05D006588 ORTHO05D008272 2.2e-62 244.2 511 35.8
C01p10080 Brassica napus HOM05D006588 ORTHO05D008272 3.7e-62 243.4 511 34.4
Sp7g27300 Schrenkiella parvula HOM05D006588 ORTHO05D008272 3.7e-62 243.4 513 34.7
Aa31LG2G21010 Aethionema arabicum HOM05D006588 ORTHO05D008272 8.2e-62 242.3 513 35.3
SGA_v2.0_scaffold28G11949 Striga asiatica HOM05D006588 ORTHO05D008272 1.1e-61 241.9 542 34.1
Thhalv10025196m.g Eutrema salsugineum HOM05D006588 ORTHO05D008272 1.3e-59 235.0 513 33.9
BraA01t00812Z Brassica rapa HOM05D006588 ORTHO05D008272 2.9e-59 233.8 511 33.5
vmacro10821 Vaccinium macrocarpon HOM05D006588 ORTHO05D008272 1.5e-58 231.5 552 33.3
Lsat_1_v5_gn_7_38281 Lactuca sativa HOM05D006588 ORTHO05D008272 8.0e-57 225.7 517 33.7
unitig_699.g19309 Utricularia gibba HOM05D006588 ORTHO05D008272 2.3e-56 224.2 509 32.6
Haze_25873 Corylus avellana HOM05D006588 ORTHO05D008272 2.6e-55 220.7 290 45.5
CARHR237240 Cardamine hirsuta HOM05D006588 ORTHO05D008272 7.0e-53 212.6 339 39.8
ATR0789G046 Amborella trichopoda HOM05D006588 ORTHO05D008272 1.7e-51 208.0 508 31.9
Lsat_1_v5_gn_7_38040 Lactuca sativa HOM05D006588 ORTHO05D008272 5.0e-51 206.5 344 38.1
COL.COLO4_18239 Corchorus olitorius HOM05D006588 ORTHO05D008272 9.4e-50 202.2 508 31.1
HPP92_003983 Vanilla planifolia HOM05D006588 ORTHO05D008272 1.0e-48 198.7 509 31.6
Medtr8g101930 Medicago truncatula HOM05D006588 ORTHO05D008272 3.4e-47 193.7 460 31.1
MELO3C011777.2 Cucumis melo HOM05D006588 ORTHO05D008272 8.3e-46 189.1 290 41.4
Lsat_1_v5_gn_7_38020 Lactuca sativa HOM05D006588 ORTHO05D008272 4.1e-45 186.8 514 30.9
Lsat_1_v5_gn_7_38780 Lactuca sativa HOM05D006588 ORTHO05D008272 5.4e-45 186.4 534 29.4
CANSAT56G3251 Cannabis sativa HOM05D006588 ORTHO05D008272 1.6e-44 184.9 269 42.4
Rhsim05G0031600 Rhododendron simsii HOM05D006588 ORTHO05D008272 1.6e-44 184.9 319 38.6
CDE06G2665 Ceratophyllum demersum HOM05D006588 ORTHO05D008272 2.0e-44 184.5 509 29.3
Lsat_1_v5_gn_7_37981 Lactuca sativa HOM05D006588 ORTHO05D008272 7.7e-44 182.6 512 28.9
Lsat_1_v5_gn_7_38001 Lactuca sativa HOM05D006588 ORTHO05D008272 7.7e-44 182.6 512 28.9
HanXRQChr03g0060991 Helianthus annuus HOM05D006588 ORTHO05D008272 8.5e-43 179.1 349 35.5
HanXRQChr03g0060631 Helianthus annuus HOM05D006588 ORTHO05D008272 4.0e-40 170.2 344 37.5
HanXRQChr03g0060671 Helianthus annuus HOM05D006588 ORTHO05D008272 6.8e-40 169.5 351 33.9
Actinidia39746 Actinidia chinensis HOM05D006588 ORTHO05D008272 1.2e-39 168.7 512 30.1
BcaC09g51727 Brassica carinata HOM05D006588 ORTHO05D008272 2.0e-39 167.9 293 39.2
HanXRQChr03g0060681 Helianthus annuus HOM05D006588 ORTHO05D008272 3.4e-39 167.2 347 33.4
HanXRQChr03g0060961 Helianthus annuus HOM05D006588 ORTHO05D008272 5.7e-39 166.4 332 33.7
HanXRQChr03g0061101 Helianthus annuus HOM05D006588 ORTHO05D008272 2.8e-38 164.1 328 35.1
HanXRQChr05g0142321 Helianthus annuus HOM05D006588 ORTHO05D008272 3.8e-35 153.7 245 42.0
Os01g0193500 Oryza sativa ssp. japonica HOM05D006588 ORTHO05D008272 6.1e-33 146.4 314 34.4
Zm00001eb121140 Zea mays HOM05D006588 ORTHO05D008272 2.3e-32 144.4 319 33.2
SEGI_25649 Sequoiadendron giganteum HOM05D006588 ORTHO05D008272 5.2e-32 143.3 344 32.6
Actinidia25278 Actinidia chinensis HOM05D006588 ORTHO05D008272 7.8e-28 129.4 258 36.4
HanXRQChr03g0060621 Helianthus annuus HOM05D006588 ORTHO05D008272 1.2e-23 115.5 145 44.8
HanXRQChr03g0060651 Helianthus annuus HOM05D006588 ORTHO05D008272 3.4e-23 114.0 214 36.4
Duzib168G2000 Durio zibethinus HOM05D006588 ORTHO05D002622 2.0e-20 104.8 244 32.0
Rhsim05G0031700 Rhododendron simsii HOM05D006588 ORTHO05D008272 1.5e-18 98.6 138 42.8
Nn7g36587 Nelumbo nucifera HOM05D006588 ORTHO05D008272 1.9e-18 98.2 298 29.9
Lsat_1_v5_gn_7_38181 Lactuca sativa HOM05D006588 ORTHO05D008272 1.6e-17 95.1 284 30.6
HanXRQChr03g0061001 Helianthus annuus HOM05D006588 ORTHO05D008272 4.4e-15 87.0 115 41.7
AagrBONN_evm.TU.Sc2ySwM_228.3249 Anthoceros agrestis HOM05D006588 ORTHO05D008272 1.3e-14 85.5 376 24.2
Mapoly0117s0028 Marchantia polymorpha HOM05D006588 ORTHO05D008272 1.3e-11 75.5 202 26.7
Lsat_1_v5_gn_7_39080 Lactuca sativa HOM05D006588 ORTHO05D008272 3.9e-11 73.9 244 29.5
Pp3c4_15950 Physcomitrium patens HOM05D006588 ORTHO05D008272 4.3e-10 70.5 212 29.2
Pp3c10_4240 Physcomitrium patens HOM05D006588 ORTHO05D008272 5.6e-10 70.1 249 24.9
Pp3c13_20140 Physcomitrium patens HOM05D006588 ORTHO05D008272 1.2e-09 68.9 202 26.2
SalBow8G2706 Salvia bowleyana HOM05D000076 ORTHO05D013329 4.7e-09 67.0 81 44.4
Pp3c2_16400 Physcomitrium patens HOM05D006588 ORTHO05D008272 1.1e-08 65.9 254 24.0
Pp3c1_20980 Physcomitrium patens HOM05D006588 ORTHO05D008272 1.5e-07 62.0 269 23.4
Mapoly0117s0029 Marchantia polymorpha HOM05D006588 ORTHO05D008272 7.6e-07 59.7 214 23.4
Pp3c21_980 Physcomitrium patens HOM05D006588 ORTHO05D008272 2.9e-06 57.8 154 27.3
Lsat_1_v5_gn_7_38261 Lactuca sativa HOM05D006588 ORTHO05D008272 3.7e-06 57.4 138 30.4
Pp3c19_6110 Physcomitrium patens HOM05D006588 ORTHO05D008272 3.7e-06 57.4 169 26.0


User provided reference genes

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