Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.L03057 Eucalyptus grandis HOM05D003428 ORTHO05D004131 4.4e-104 381.3 196 100.0
Eucgr.E01158 Eucalyptus grandis HOM05D003428 ORTHO05D004131 2.8e-95 352.1 196 90.3
Eucgr.E04091 Eucalyptus grandis HOM05D003428 ORTHO05D004131 6.3e-87 324.3 191 88.0
PGR042G0159 Punica granatum HOM05D003428 ORTHO05D004131 1.1e-51 207.2 193 59.6
RcHm_v2.0_Chr5g0003711 Rosa chinensis HOM05D003428 ORTHO05D004131 4.3e-43 178.7 191 57.6
MD10G1317800 Malus domestica HOM05D003428 ORTHO05D004131 2.8e-42 176.0 190 55.8
Prupe.4G024000 Prunus persica HOM05D003428 ORTHO05D004131 3.6e-42 175.6 193 54.4
FvH4_3g02460 Fragaria vesca HOM05D003428 ORTHO05D004131 1.4e-41 173.7 189 55.6
FAN21G0107 Fragaria x ananassa HOM05D003428 ORTHO05D004131 1.4e-41 173.7 189 55.6
FAN25G3463 Fragaria x ananassa HOM05D003428 ORTHO05D004131 1.4e-41 173.7 189 56.1
TWI38G0331 Tripterygium wilfordii HOM05D003428 ORTHO05D004131 2.4e-41 172.9 190 58.4
MELO3C002470.2 Cucumis melo HOM05D003428 ORTHO05D004131 3.1e-41 172.6 187 54.5
TWI38G0316 Tripterygium wilfordii HOM05D003428 ORTHO05D004131 3.1e-41 172.6 188 56.9
Cfa000250 Carpinus fangiana HOM05D003428 ORTHO05D004131 5.3e-41 171.8 190 54.7
ClCG03G004880 Citrullus lanatus HOM05D003428 ORTHO05D004131 6.9e-41 171.4 188 54.3
MD05G1342900 Malus domestica HOM05D003428 ORTHO05D004131 6.9e-41 171.4 190 54.2
Dinv20034 Davidia involucrata HOM05D003428 ORTHO05D004131 2.0e-40 169.9 190 52.6
Manes.16G010100 Manihot esculenta HOM05D003428 ORTHO05D004131 2.0e-40 169.9 193 56.0
Sed0007172 Sechium edule HOM05D003428 ORTHO05D004131 2.0e-40 169.9 189 55.0
GSVIVG01012655001 Vitis vinifera HOM05D003428 ORTHO05D004131 5.8e-40 168.3 190 51.1
Haze_06774 Corylus avellana HOM05D003428 ORTHO05D004131 2.2e-39 166.4 190 54.7
CsaV3_1G010910 Cucumis sativus L. HOM05D003428 ORTHO05D004131 2.9e-39 166.0 187 52.9
QL05p074042 Quercus lobata HOM05D003428 ORTHO05D004131 3.8e-39 165.6 190 53.2
Gohir.A06G147300 Gossypium hirsutum HOM05D003428 ORTHO05D004131 1.9e-38 163.3 188 49.5
Sopen02g025040 Solanum pennellii HOM05D003428 ORTHO05D004131 1.9e-38 163.3 199 48.2
Gohir.D06G153100 Gossypium hirsutum HOM05D003428 ORTHO05D004131 3.2e-38 162.5 191 50.3
Gorai.010G179100 Gossypium raimondii HOM05D003428 ORTHO05D004131 3.2e-38 162.5 191 50.3
Thecc.06G217400 Theobroma cacao HOM05D003428 ORTHO05D004131 5.4e-38 161.8 188 54.8
PSO832G0075 Papaver somniferum HOM05D003428 ORTHO05D004131 7.1e-38 161.4 200 51.5
CiPaw.09G089300 Carya illinoinensis HOM05D003428 ORTHO05D004131 1.2e-37 160.6 196 53.1
Thhalv10023219m.g Eutrema salsugineum HOM05D003428 ORTHO05D004131 1.2e-37 160.6 190 50.0
PSO210G3795 Papaver somniferum HOM05D003428 ORTHO05D004131 1.6e-37 160.2 196 50.0
THA.LOC104809511 Tarenaya hassleriana HOM05D003428 ORTHO05D004131 2.1e-37 159.8 198 52.0
Cpa.g.sc198.25 Carica papaya HOM05D003428 ORTHO05D004131 3.5e-37 159.1 192 53.1
CiPaw.10G069400 Carya illinoinensis HOM05D003428 ORTHO05D004131 3.5e-37 159.1 193 53.4
COL.COLO4_31743 Corchorus olitorius HOM05D003428 ORTHO05D004131 3.5e-37 159.1 190 54.7
DCAR_004205 Daucus carota HOM05D003428 ORTHO05D004131 3.5e-37 159.1 197 48.7
Solyc02g080340.3 Solanum lycopersicum HOM05D003428 ORTHO05D004131 3.5e-37 159.1 202 49.5
Aa31LG2G8980 Aethionema arabicum HOM05D003428 ORTHO05D004131 6.0e-37 158.3 201 48.8
BcaC04g22357 Brassica carinata HOM05D003428 ORTHO05D004131 7.9e-37 157.9 190 51.1
C09p20200 Brassica napus HOM05D003428 ORTHO05D004131 7.9e-37 157.9 190 51.1
BolC9t54926H Brassica oleracea HOM05D003428 ORTHO05D004131 7.9e-37 157.9 190 51.1
Lj2C271T3 Lonicera japonica HOM05D003428 ORTHO05D004131 7.9e-37 157.9 190 47.9
AT1G61850 Arabidopsis thaliana HOM05D003428 ORTHO05D004131 1.0e-36 157.5 195 49.2
Sp2g02690 Schrenkiella parvula HOM05D003428 ORTHO05D004131 1.3e-36 157.1 195 48.2
Nn1g03583 Nelumbo nucifera HOM05D003428 ORTHO05D004131 1.8e-36 156.8 189 51.9
A09p16630 Brassica napus HOM05D003428 ORTHO05D004131 2.3e-36 156.4 190 50.5
BraA09t37300Z Brassica rapa HOM05D003428 ORTHO05D004131 2.3e-36 156.4 190 50.5
AUR62012675 Chenopodium quinoa HOM05D003428 ORTHO05D004131 2.3e-36 156.4 190 47.9
TAR624G0497 Trochodendron aralioides HOM05D003428 ORTHO05D004131 2.3e-36 156.4 189 50.3
CAN.G569.22 Capsicum annuum HOM05D003428 ORTHO05D004131 8.7e-36 154.5 211 47.9
Duzib235G0114 Durio zibethinus HOM05D003428 ORTHO05D004131 8.7e-36 154.5 189 52.4
AL2G14210 Arabidopsis lyrata HOM05D003428 ORTHO05D004131 1.5e-35 153.7 195 48.7
Rhsim02G0110400 Rhododendron simsii HOM05D003428 ORTHO05D004131 2.5e-35 152.9 205 50.7
SalBow3G0064 Salvia bowleyana HOM05D003428 ORTHO05D004131 2.5e-35 152.9 210 46.7
SalBow3G1270 Salvia bowleyana HOM05D003428 ORTHO05D004131 2.5e-35 152.9 210 46.7
BcaB07g31289 Brassica carinata HOM05D003428 ORTHO05D004131 4.3e-35 152.1 190 51.6
MBI02_g28339_MAGBIO Magnolia biondii HOM05D003428 ORTHO05D004131 5.6e-35 151.8 190 47.4
Carub.0002s0319 Capsella rubella HOM05D003428 ORTHO05D004131 7.4e-35 151.4 195 48.7
Cc09_g01930 Coffea canephora HOM05D003428 ORTHO05D004131 1.3e-34 150.6 196 47.4
Glyma.17G015200 Glycine max HOM05D003428 ORTHO05D004131 1.3e-34 150.6 191 49.7
ATR0752G216 Amborella trichopoda HOM05D003428 ORTHO05D004131 3.7e-34 149.1 192 44.8
Aa31LG1G3130 Aethionema arabicum HOM05D003428 ORTHO05D004131 1.4e-33 147.1 189 50.3
Ciclev10014053m.g Citrus clementina HOM05D003428 ORTHO05D004131 2.4e-33 146.4 193 49.2
HPP92_017608 Vanilla planifolia HOM05D003428 ORTHO05D004131 5.3e-33 145.2 191 45.5
AUR62021981 Chenopodium quinoa HOM05D003428 ORTHO05D004131 1.2e-32 144.1 121 59.5
Lalb_Chr15g0087431 Lupinus albus HOM05D003428 ORTHO05D004131 2.0e-32 143.3 191 48.2
Peaxi162Scf00262g00059 Petunia axillaris HOM05D003428 ORTHO05D004131 3.4e-32 142.5 219 44.3
Gorai.009G177000 Gossypium raimondii HOM05D003428 ORTHO05D004131 5.8e-32 141.7 189 47.6
Migut.M01297 Erythranthe guttata HOM05D003428 ORTHO05D004131 9.9e-32 141.0 222 41.0
SGA_v2.0_scaffold7G03871 Striga asiatica HOM05D003428 ORTHO05D004131 1.3e-31 140.6 233 40.8
arahy.Tifrunner.gnm1.ann1.IL23TX Arachis hypogaea HOM05D003428 ORTHO05D004131 6.4e-31 138.3 193 43.5
CARHR050470 Cardamine hirsuta HOM05D003428 ORTHO05D004131 8.4e-31 137.9 128 57.0
Lsat_1_v5_gn_1_124260 Lactuca sativa HOM05D003428 ORTHO05D004131 8.4e-31 137.9 210 43.3
Gohir.D10G014100 Gossypium hirsutum HOM05D003428 ORTHO05D004131 1.9e-30 136.7 189 46.6
arahy.Tifrunner.gnm1.ann1.FVAC65 Arachis hypogaea HOM05D003428 ORTHO05D004131 2.5e-30 136.3 193 43.0
Lsat_1_v5_gn_7_17340 Lactuca sativa HOM05D003428 ORTHO05D004131 2.5e-30 136.3 208 44.2
Oeu063903.1 Olea europaea HOM05D003428 ORTHO05D004131 2.5e-30 136.3 190 44.2
Ah.14g088090 Amaranthus hybridus HOM05D003428 ORTHO05D004131 4.2e-30 135.6 191 47.1
Oeu043543.1 Olea europaea HOM05D003428 ORTHO05D004131 5.5e-30 135.2 230 40.4
Hund23486 Selenicereus undatus HOM05D003428 ORTHO05D004131 2.1e-29 133.3 202 42.6
CDE05G1926 Ceratophyllum demersum HOM05D003428 ORTHO05D004131 3.5e-29 132.5 189 40.2
Ah.09g235070 Amaranthus hybridus HOM05D003428 ORTHO05D004131 4.6e-29 132.1 190 40.5
arahy.Tifrunner.gnm1.ann1.0P9V0B Arachis hypogaea HOM05D003428 ORTHO05D004131 4.6e-29 132.1 194 42.8
Zm00001eb106120 Zea mays HOM05D003428 ORTHO05D004131 6.0e-29 131.7 198 46.5
Aqoxy7G03064 Aquilegia oxysepala HOM05D003428 ORTHO05D004131 1.3e-28 130.6 216 40.7
HanXRQChr01g0003631 Helianthus annuus HOM05D003428 ORTHO05D004131 6.7e-28 128.3 204 42.6
HanXRQChr05g0129871 Helianthus annuus HOM05D003428 ORTHO05D004131 1.5e-27 127.1 212 41.5
Lj1A1228G69 Lonicera japonica HOM05D003428 ORTHO05D004131 1.9e-27 126.7 125 52.8
Zm00001eb322860 Zea mays HOM05D003428 ORTHO05D004131 7.4e-27 124.8 196 45.9
Phvul.003G077100 Phaseolus vulgaris HOM05D003428 ORTHO05D004131 9.6e-27 124.4 194 43.8
arahy.Tifrunner.gnm1.ann1.YW42SM Arachis hypogaea HOM05D003428 ORTHO05D004131 1.3e-26 124.0 189 40.7
unitig_748.g7971 Utricularia gibba HOM05D003428 ORTHO05D004131 1.3e-26 124.0 207 39.1
Os07g0520900 Oryza sativa ssp. japonica HOM05D003428 ORTHO05D004131 1.6e-26 123.6 202 44.1
ECA236G4773 Erigeron canadensis HOM05D003428 ORTHO05D004131 3.7e-26 122.5 119 54.6
Nitab4.5_0010096g0010 Nicotiana tabacum HOM05D003428 ORTHO05D004131 3.7e-26 122.5 211 41.2
Sabra04G0010400 Salix brachista HOM05D003428 ORTHO05D004131 1.1e-25 120.9 185 43.2
ECA248G3692 Erigeron canadensis HOM05D003428 ORTHO05D004131 1.8e-25 120.2 140 47.1
vmacro15816 Vaccinium macrocarpon HOM05D003428 ORTHO05D004131 3.1e-25 119.4 113 58.4
Potri.011G000200 Populus trichocarpa HOM05D003428 ORTHO05D004131 5.3e-25 118.6 186 43.5
CSS0033465 Camellia sinensis var. sinensis HOM05D003428 ORTHO05D004131 7.6e-24 114.8 201 40.8
Atru.chr10.2177 Acer truncatum HOM05D003428 ORTHO05D004131 1.7e-23 113.6 131 53.4
arahy.Tifrunner.gnm1.ann1.D341M5 Arachis hypogaea HOM05D003428 ORTHO05D004131 2.9e-23 112.8 189 38.6
Hund21391 Selenicereus undatus HOM05D003428 ORTHO05D004131 1.9e-22 110.2 165 41.2
EL10Ac8g20020 Beta vulgaris HOM05D003428 ORTHO05D004131 3.2e-22 109.4 152 46.1
VMungo1215G2587 Vigna mungo HOM05D003428 ORTHO05D004131 5.5e-22 108.6 203 41.9
Potri.004G018700 Populus trichocarpa HOM05D003428 ORTHO05D004131 3.5e-21 105.9 191 43.5
Mapoly0096s0015 Marchantia polymorpha HOM05D003428 ORTHO05D004131 1.9e-19 100.1 217 37.3
CSS0004273 Camellia sinensis var. sinensis HOM05D003428 ORTHO05D004131 5.7e-19 98.6 98 56.1
CSS0019319 Camellia sinensis var. sinensis HOM05D003428 ORTHO05D004131 5.7e-19 98.6 98 56.1
Psat4g063040 Pisum sativum HOM05D003428 ORTHO05D004131 2.2e-18 96.7 101 48.5
Ca_21094_v3 Cicer arietinum L. HOM05D003428 ORTHO05D004131 3.7e-18 95.9 104 49.0
Ca_30202_v3 Cicer arietinum L. HOM05D003428 ORTHO05D004131 3.7e-18 95.9 104 49.0
Pp3c14_24720 Physcomitrium patens HOM05D003428 ORTHO05D004131 6.3e-18 95.1 205 35.1
Hma1.2p1_3566F.1_g336820 Hydrangea macrophylla HOM05D003428 ORTHO05D004131 2.4e-17 93.2 131 43.5
TPR.G37012 Trifolium pratense HOM05D003428 ORTHO05D004131 2.4e-17 93.2 105 49.5
Eucgr.B02131 Eucalyptus grandis HOM05D050785 ORTHO05D004131 4.5e-16 89.0 58 82.8
Glyma.07G259000 Glycine max HOM05D003428 ORTHO05D004131 1.3e-15 87.4 93 49.5
Lj4g0005527 Lotus japonicus HOM05D003428 ORTHO05D004131 8.5e-15 84.7 92 47.8
Eucgr.H03695 Eucalyptus grandis HOM05D050785 ORTHO05D004131 3.2e-14 82.8 58 77.6
SEGI_09197 Sequoiadendron giganteum HOM05D003428 ORTHO05D004131 5.5e-14 82.0 197 30.5
Medtr4g131850 Medicago truncatula HOM05D003428 ORTHO05D004131 9.4e-14 81.3 98 48.0
Hma1.2p1_2687F.1_g326960 Hydrangea macrophylla HOM05D003428 ORTHO05D004131 7.9e-13 78.2 77 51.9
MSTRG.13151 Avicennia marina HOM05D003428 ORTHO05D004131 6.7e-12 75.1 117 41.0
CBR_g8997 Chara braunii HOM05D003428 ORTHO05D004131 2.0e-11 73.6 217 30.0
SMO367G0744 Selaginella moellendorffii HOM05D003428 ORTHO05D004131 2.0e-11 73.6 128 37.5
QL10p056553 Quercus lobata HOM05D003428 ORTHO05D004131 9.7e-11 71.2 94 50.0
HanXRQChr15g0471381 Helianthus annuus HOM05D003428 ORTHO05D004131 1.3e-10 70.9 68 54.4
Actinidia11848 Actinidia chinensis HOM05D003428 ORTHO05D004131 1.8e-09 67.0 60 61.7
VMungo1383G2631 Vigna mungo HOM05D003428 ORTHO05D004131 9.4e-06 54.7 97 42.3


User provided reference genes

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