Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.L02969 Eucalyptus grandis HOM05D002477 ORTHO05D001927 3.6e-48 194.5 94 100.0
Eucgr.H02945 Eucalyptus grandis HOM05D002477 ORTHO05D001927 3.4e-46 188.0 94 96.8
Eucgr.C04382 Eucalyptus grandis HOM05D002477 ORTHO05D001927 1.4e-44 182.6 93 96.8
CiPaw.09G035000 Carya illinoinensis HOM05D002477 ORTHO05D001927 5.5e-20 100.9 93 52.7
QL07p021424 Quercus lobata HOM05D002477 ORTHO05D001927 1.6e-19 99.4 94 54.3
Potri.016G053300 Populus trichocarpa HOM05D002477 ORTHO05D001927 2.1e-19 99.0 94 53.2
Cfa016856 Carpinus fangiana HOM05D002477 ORTHO05D001927 7.9e-19 97.1 93 50.5
Cfa016857 Carpinus fangiana HOM05D002477 ORTHO05D001927 7.9e-19 97.1 93 50.5
Haze_19906 Corylus avellana HOM05D002477 ORTHO05D001927 6.7e-18 94.0 93 49.5
Thecc.05G161200 Theobroma cacao HOM05D002477 ORTHO05D001927 4.3e-17 91.3 93 49.5
Manes.09G026400 Manihot esculenta HOM05D002477 ORTHO05D001927 5.7e-17 90.9 93 50.5
Sabra16G0056600 Salix brachista HOM05D002477 ORTHO05D001927 7.4e-17 90.5 94 48.9
Thecc.09G365200 Theobroma cacao HOM05D002477 ORTHO05D001927 2.2e-16 89.0 93 50.5
Prupe.7G066400 Prunus persica HOM05D002477 ORTHO05D001927 2.8e-16 88.6 93 47.3
PGR142G3066 Punica granatum HOM05D002477 ORTHO05D001927 4.8e-16 87.8 95 46.3
QL08p056700 Quercus lobata HOM05D002477 ORTHO05D001927 4.8e-16 87.8 94 50.0
Duzib093G0277 Durio zibethinus HOM05D002477 ORTHO05D001927 3.1e-15 85.1 93 47.3
Sabra06G0038500 Salix brachista HOM05D002477 ORTHO05D000502 5.3e-15 84.3 93 46.2
Duzib106G0995 Durio zibethinus HOM05D002477 ORTHO05D001927 1.5e-14 82.8 93 47.3
Ciclev10004349m.g Citrus clementina HOM05D002477 ORTHO05D001927 2.0e-14 82.4 96 46.9
PGR004G2549 Punica granatum HOM05D002477 ORTHO05D001927 3.4e-14 81.6 96 43.8
Psat6g126680 Pisum sativum HOM05D002477 ORTHO05D001927 1.3e-13 79.7 93 45.2
GSVIVG01033321001 Vitis vinifera HOM05D002477 ORTHO05D001927 2.9e-13 78.6 93 45.2
CANSAT80G2456 Cannabis sativa HOM05D002477 ORTHO05D001927 3.8e-13 78.2 93 45.2
Nitab4.5_0004532g0010 Nicotiana tabacum HOM05D002477 ORTHO05D001927 5.0e-13 77.8 93 43.0
Nitab4.5_0005559g0030 Nicotiana tabacum HOM05D002477 ORTHO05D001927 5.0e-13 77.8 92 43.5
Rhsim04G0100400 Rhododendron simsii HOM05D002477 ORTHO05D001927 5.0e-13 77.8 89 43.8
MD12G1067800 Malus domestica HOM05D002477 ORTHO05D001927 6.5e-13 77.4 93 44.1
PGSC0003DMG400023718 Solanum tuberosum HOM05D002477 ORTHO05D001927 1.1e-12 76.6 93 40.9
PGSC0003DMG400018039 Solanum tuberosum HOM05D002477 ORTHO05D001927 1.4e-12 76.3 93 40.9
MELO3C009670.2 Cucumis melo HOM05D002477 ORTHO05D001927 1.9e-12 75.9 89 46.1
ClCG10G017130 Citrullus lanatus HOM05D002477 ORTHO05D001927 2.5e-12 75.5 90 44.4
Sed0021406 Sechium edule HOM05D002477 ORTHO05D001927 2.5e-12 75.5 92 42.4
CAN.G128.17 Capsicum annuum HOM05D002477 ORTHO05D001927 9.4e-12 73.6 93 39.8
Hund24730 Selenicereus undatus HOM05D002477 ORTHO05D001927 9.4e-12 73.6 84 44.0
THA.LOC104807903 Tarenaya hassleriana HOM05D002477 ORTHO05D001927 1.2e-11 73.2 81 45.7
Lj5g0008192 Lotus japonicus HOM05D002477 ORTHO05D001927 1.6e-11 72.8 91 44.0
Actinidia38563 Actinidia chinensis HOM05D002477 ORTHO05D001927 2.1e-11 72.4 89 41.6
Haze_12555 Corylus avellana HOM05D002477 ORTHO05D001927 2.1e-11 72.4 79 46.8
Ca_26695_v3 Cicer arietinum L. HOM05D002477 ORTHO05D001927 2.7e-11 72.0 92 38.0
Dinv18078 Davidia involucrata HOM05D002477 ORTHO05D000502 2.7e-11 72.0 93 43.0
MD14G1067900 Malus domestica HOM05D002477 ORTHO05D001927 2.7e-11 72.0 98 40.8
RcHm_v2.0_Chr3g0481261 Rosa chinensis HOM05D002477 ORTHO05D001927 2.7e-11 72.0 95 41.1
Sopen10g030860 Solanum pennellii HOM05D002477 ORTHO05D001927 2.7e-11 72.0 84 41.7
PGSC0003DMG400011962 Solanum tuberosum HOM05D002477 ORTHO05D001927 2.7e-11 72.0 93 39.8
Aa31LG10G8430 Aethionema arabicum HOM05D002477 ORTHO05D001927 3.6e-11 71.6 82 46.3
Dinv24130 Davidia involucrata HOM05D002477 ORTHO05D001927 3.6e-11 71.6 93 41.9
TAR629G1056 Trochodendron aralioides HOM05D002477 ORTHO05D001927 4.6e-11 71.2 88 44.3
CSS0044202 Camellia sinensis var. sinensis HOM05D002477 ORTHO05D001927 6.1e-11 70.9 89 38.2
Gohir.D09G120700 Gossypium hirsutum HOM05D002477 ORTHO05D001927 6.1e-11 70.9 82 46.3
Gorai.006G138200 Gossypium raimondii HOM05D002477 ORTHO05D001927 6.1e-11 70.9 82 46.3
vmacro09089 Vaccinium macrocarpon HOM05D002477 ORTHO05D001927 6.1e-11 70.9 89 40.4
Actinidia17246 Actinidia chinensis HOM05D002477 ORTHO05D001927 1.0e-10 70.1 87 40.2
MD06G1218200 Malus domestica HOM05D002477 ORTHO05D001927 1.0e-10 70.1 99 39.4
Gohir.A09G123900 Gossypium hirsutum HOM05D002477 ORTHO05D001927 1.4e-10 69.7 82 46.3
CSS0018822 Camellia sinensis var. sinensis HOM05D002477 ORTHO05D001927 1.8e-10 69.3 88 37.5
Oeu033163.1 Olea europaea HOM05D002477 ORTHO05D001927 2.3e-10 68.9 93 41.9
Prupe.5G223300 Prunus persica HOM05D002477 ORTHO05D001927 2.3e-10 68.9 98 38.8
CSS0020089 Camellia sinensis var. sinensis HOM05D002477 ORTHO05D001927 3.0e-10 68.6 89 38.2
CSS0026110 Camellia sinensis var. sinensis HOM05D002477 ORTHO05D001927 5.1e-10 67.8 89 37.1
FvH4_6g23300 Fragaria vesca HOM05D002477 ORTHO05D001927 6.7e-10 67.4 96 38.5
Ah.04g151870 Amaranthus hybridus HOM05D002477 ORTHO05D001927 8.8e-10 67.0 90 40.0
Cc06_g16670 Coffea canephora HOM05D002477 ORTHO05D001927 1.1e-09 66.6 93 40.9
FAN02G1477 Fragaria x ananassa HOM05D002477 ORTHO05D001927 1.1e-09 66.6 96 38.5
Sc25g0005240 Simmondsia chinensis HOM05D002477 ORTHO05D001927 1.1e-09 66.6 87 36.8
Sopen03g016980 Solanum pennellii HOM05D002477 ORTHO05D001927 1.1e-09 66.6 92 39.1
arahy.Tifrunner.gnm1.ann1.C30FA8 Arachis hypogaea HOM05D002477 ORTHO05D001927 1.5e-09 66.2 89 40.4
ECA247G2430 Erigeron canadensis HOM05D002477 ORTHO05D001927 1.5e-09 66.2 84 40.5
EL10Ac3g07024 Beta vulgaris HOM05D002477 ORTHO05D001927 2.0e-09 65.9 86 40.7
Migut.D00049 Erythranthe guttata HOM05D002477 ORTHO05D001927 2.0e-09 65.9 94 41.5
Lalb_Chr20g0110841 Lupinus albus HOM05D002477 ORTHO05D001927 2.5e-09 65.5 88 36.4
SHI33651 Sapria himalayana HOM05D002477 ORTHO05D001927 3.3e-09 65.1 89 39.3
arahy.Tifrunner.gnm1.ann1.PZF5CH Arachis hypogaea HOM05D002477 ORTHO05D001927 4.3e-09 64.7 89 39.3
CAN.G77.2 Capsicum annuum HOM05D002477 ORTHO05D001927 4.3e-09 64.7 93 37.6
Nitab4.5_0005201g0030 Nicotiana tabacum HOM05D002477 ORTHO05D001927 7.4e-09 63.9 93 37.6
AUR62025998 Chenopodium quinoa HOM05D002477 ORTHO05D001927 9.7e-09 63.5 90 36.7
FAN09G0645 Fragaria x ananassa HOM05D002477 ORTHO05D001927 9.7e-09 63.5 96 35.4
Carub.0002s1451 Capsella rubella HOM05D002477 ORTHO05D001927 2.2e-08 62.4 81 40.7
Phvul.007G255000 Phaseolus vulgaris HOM05D002477 ORTHO05D001927 2.2e-08 62.4 93 37.6
AUR62024404 Chenopodium quinoa HOM05D002477 ORTHO05D001927 3.7e-08 61.6 90 35.6
Solyc03g063720.4 Solanum lycopersicum HOM05D002477 ORTHO05D001927 4.8e-08 61.2 83 37.3
CANSAT80G0265 Cannabis sativa HOM05D002477 ORTHO05D001927 8.2e-08 60.5 81 45.7
CsaV3_3G039260 Cucumis sativus L. HOM05D002477 ORTHO05D001927 8.2e-08 60.5 89 38.2
HanXRQChr15g0491211 Helianthus annuus HOM05D002477 ORTHO05D001927 8.2e-08 60.5 82 36.6
MSTRG.9604 Avicennia marina HOM05D002477 ORTHO05D001927 1.1e-07 60.1 93 36.6
SGA_v2.0_scaffold7G04035 Striga asiatica HOM05D001894 ORTHO05D001752 1.8e-07 59.3 86 44.2
Migut.D01681 Erythranthe guttata HOM05D002477 ORTHO05D001927 4.1e-07 58.2 93 36.6
FAN14G5266 Fragaria x ananassa HOM05D002477 ORTHO05D001927 6.9e-07 57.4 129 31.0
C06p41990 Brassica napus HOM05D002477 ORTHO05D001927 1.2e-06 56.6 93 37.6
BolC6t39229H Brassica oleracea HOM05D002477 ORTHO05D001927 1.2e-06 56.6 93 37.6
Nitab4.5_0002220g0010 Nicotiana tabacum HOM05D002477 ORTHO05D001927 1.2e-06 56.6 93 33.3
FAN05G1216 Fragaria x ananassa HOM05D002477 ORTHO05D001927 2.0e-06 55.8 129 31.0
HanXRQChr05g0132191 Helianthus annuus HOM05D002477 ORTHO05D001927 2.0e-06 55.8 93 37.6
Peaxi162Scf00650g00229 Petunia axillaris HOM05D002477 ORTHO05D001927 3.4e-06 55.1 92 35.9
unitig_744.g24381 Utricularia gibba HOM05D002477 ORTHO05D001927 4.5e-06 54.7 86 34.9


User provided reference genes

Program Settings