Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.L02949 Eucalyptus grandis HOM05D005617 ORTHO05D006847 1.2e-155 553.1 285 100.0
Eucgr.B02145 Eucalyptus grandis HOM05D005617 ORTHO05D006847 3.3e-153 545.0 285 98.2
PGR142G1895 Punica granatum HOM05D005617 ORTHO05D006847 3.3e-116 422.2 285 77.5
Dinv07760 Davidia involucrata HOM05D005617 ORTHO05D006847 1.5e-113 413.3 254 83.9
Prupe.6G349300 Prunus persica HOM05D005617 ORTHO05D006847 2.0e-113 412.9 258 81.8
MD09G1286500 Malus domestica HOM05D005617 ORTHO05D006847 6.3e-112 407.9 286 74.1
GSVIVG01023530001 Vitis vinifera HOM05D005617 ORTHO05D006847 5.4e-111 404.8 254 81.5
MD17G1278900 Malus domestica HOM05D005617 ORTHO05D006847 1.6e-110 403.3 286 73.4
CSS0012605 Camellia sinensis var. sinensis HOM05D005617 ORTHO05D006847 4.5e-110 401.7 254 79.5
TAR636G3199 Trochodendron aralioides HOM05D005617 ORTHO05D006847 2.3e-109 399.4 254 79.9
TWI56G1032 Tripterygium wilfordii HOM05D005617 ORTHO05D006847 6.6e-109 397.9 291 70.4
CANSAT54G2044 Cannabis sativa HOM05D005617 ORTHO05D006847 3.3e-108 395.6 289 72.3
Gohir.A11G299400 Gossypium hirsutum HOM05D005617 ORTHO05D006847 5.6e-108 394.8 282 73.0
Gorai.007G345400 Gossypium raimondii HOM05D005617 ORTHO05D006847 5.6e-108 394.8 278 73.7
Hma1.2p1_0075F.1_g039170 Hydrangea macrophylla HOM05D005617 ORTHO05D006847 5.6e-108 394.8 256 78.9
CiPaw.08G118100 Carya illinoinensis HOM05D005617 ORTHO05D006847 7.3e-108 394.4 285 72.6
Thecc.05G271700 Theobroma cacao HOM05D005617 ORTHO05D006847 9.5e-108 394.0 243 80.2
COL.COLO4_15469 Corchorus olitorius HOM05D005617 ORTHO05D006847 1.2e-107 393.7 244 79.9
Gohir.D11G314200 Gossypium hirsutum HOM05D005617 ORTHO05D006847 1.2e-107 393.7 278 73.7
CsaV3_1G036020 Cucumis sativus L. HOM05D005617 ORTHO05D006847 8.9e-106 387.5 289 71.3
MBI10_g30078_MAGBIO Magnolia biondii HOM05D005617 ORTHO05D006847 7.5e-105 384.4 254 77.6
QL03p030835 Quercus lobata HOM05D005617 ORTHO05D006847 1.3e-104 383.6 275 73.1
Duzib177G1169 Durio zibethinus HOM05D005617 ORTHO05D006847 2.9e-104 382.5 243 79.4
Aqoxy2G03651 Aquilegia oxysepala HOM05D005617 ORTHO05D006847 6.4e-104 381.3 289 69.2
Manes.08G138800 Manihot esculenta HOM05D005617 ORTHO05D006847 6.4e-104 381.3 257 73.9
Sed0027621 Sechium edule HOM05D005617 ORTHO05D006847 8.3e-104 380.9 289 69.6
Sc06g0003230 Simmondsia chinensis HOM05D005617 ORTHO05D006847 3.2e-103 379.0 269 72.9
Lj2A41G63 Lonicera japonica HOM05D005617 ORTHO05D006847 5.4e-103 378.3 258 74.4
Glyma.19G248200 Glycine max HOM05D005617 ORTHO05D006847 3.5e-102 375.6 286 68.2
Ciclev10021517m.g Citrus clementina HOM05D005617 ORTHO05D006847 4.6e-102 375.2 289 69.6
Glyma.03G250700 Glycine max HOM05D005617 ORTHO05D006847 7.8e-102 374.4 286 67.8
VMungo0540G0455 Vigna mungo HOM05D005617 ORTHO05D006847 1.3e-101 373.6 260 72.7
RcHm_v2.0_Chr3g0449811 Rosa chinensis HOM05D005617 ORTHO05D006847 1.7e-101 373.2 286 67.5
Potri.013G046200 Populus trichocarpa HOM05D005617 ORTHO05D006847 3.0e-101 372.5 239 78.2
Phvul.006G105300 Phaseolus vulgaris HOM05D005617 ORTHO05D006847 8.6e-101 370.9 287 67.6
ECA238G4125 Erigeron canadensis HOM05D005617 ORTHO05D006847 1.5e-100 370.2 243 75.7
arahy.Tifrunner.gnm1.ann1.X65E39 Arachis hypogaea HOM05D005617 ORTHO05D006847 3.3e-100 369.0 287 67.6
MSTRG.27377 Avicennia marina HOM05D005617 ORTHO05D006847 3.3e-100 369.0 290 65.9
Actinidia34747 Actinidia chinensis HOM05D005617 ORTHO05D006847 5.6e-100 368.2 256 73.8
arahy.Tifrunner.gnm1.ann1.9NRB0Q Arachis hypogaea HOM05D005617 ORTHO05D006847 5.6e-100 368.2 287 67.2
HanXRQChr14g0455191 Helianthus annuus HOM05D005617 ORTHO05D006847 7.3e-100 367.9 286 71.0
Lj1g0025948 Lotus japonicus HOM05D005617 ORTHO05D006847 9.5e-100 367.5 286 67.8
Migut.F00803 Erythranthe guttata HOM05D005617 ORTHO05D006847 2.1e-99 366.3 255 73.3
PSO017G5929 Papaver somniferum HOM05D005617 ORTHO05D006847 3.6e-99 365.5 286 68.5
AUR62004851 Chenopodium quinoa HOM05D005617 ORTHO05D006847 1.1e-98 364.0 255 73.3
Cc02_g08910 Coffea canephora HOM05D005617 ORTHO05D006847 1.8e-98 363.2 278 68.0
Lalb_Chr04g0262061 Lupinus albus HOM05D005617 ORTHO05D006847 2.3e-98 362.8 280 70.0
Oeu012233.2 Olea europaea HOM05D005617 ORTHO05D006847 5.2e-98 361.7 275 68.7
SalBow3G1639 Salvia bowleyana HOM05D005617 ORTHO05D006847 1.5e-97 360.1 289 66.1
PSO063G2686 Papaver somniferum HOM05D005617 ORTHO05D006847 5.8e-97 358.2 244 74.2
Psat3g006600 Pisum sativum HOM05D005617 ORTHO05D006847 5.8e-97 358.2 285 66.3
EL10Ac4g09040 Beta vulgaris HOM05D005617 ORTHO05D006847 7.5e-97 357.8 243 74.9
FAN14G0582 Fragaria x ananassa HOM05D005617 ORTHO05D006847 2.2e-96 356.3 286 64.7
TPR.G6961 Trifolium pratense HOM05D005617 ORTHO05D006847 4.9e-96 355.1 258 69.0
CARHR008550 Cardamine hirsuta HOM05D005617 ORTHO05D006847 4.1e-95 352.1 292 65.4
HPP92_002964 Vanilla planifolia HOM05D005617 ORTHO05D006847 5.4e-95 351.7 256 69.5
Potri.019G018300 Populus trichocarpa HOM05D005617 ORTHO05D006847 9.2e-95 350.9 272 68.8
THA.LOC104805778 Tarenaya hassleriana HOM05D005617 ORTHO05D006847 1.2e-94 350.5 290 65.2
Ah.06g191860 Amaranthus hybridus HOM05D005617 ORTHO05D006847 1.6e-94 350.1 221 78.3
FAN05G0714 Fragaria x ananassa HOM05D001473 ORTHO05D003934 2.1e-94 349.7 285 64.2
PGSC0003DMG400011501 Solanum tuberosum HOM05D005617 ORTHO05D006847 2.1e-94 349.7 225 77.3
Solyc04g009940.4 Solanum lycopersicum HOM05D005617 ORTHO05D006847 4.6e-94 348.6 223 78.0
Sopen04g005070 Solanum pennellii HOM05D005617 ORTHO05D006847 4.6e-94 348.6 223 78.0
DCAR_023096 Daucus carota HOM05D005617 ORTHO05D006847 7.8e-94 347.8 283 66.1
Thhalv10008167m.g Eutrema salsugineum HOM05D005617 ORTHO05D006847 1.0e-93 347.4 291 64.9
FAN05G5604 Fragaria x ananassa HOM05D001473 ORTHO05D003934 2.3e-93 346.3 285 63.9
Sp1g07300 Schrenkiella parvula HOM05D005617 ORTHO05D006847 6.6e-93 344.7 286 64.7
C05p06720 Brassica napus HOM05D005617 ORTHO05D006847 8.6e-93 344.4 288 61.8
CAN.G1609.4 Capsicum annuum HOM05D005617 ORTHO05D006847 1.5e-92 343.6 223 77.1
Medtr7g115670 Medicago truncatula HOM05D005617 ORTHO05D006847 1.5e-92 343.6 236 74.2
BraA06t23768Z Brassica rapa HOM05D005617 ORTHO05D006847 1.9e-92 343.2 292 62.3
AL1G19070 Arabidopsis lyrata HOM05D005617 ORTHO05D006847 3.3e-92 342.4 289 65.4
BcaC05g24795 Brassica carinata HOM05D005617 ORTHO05D006847 4.3e-92 342.0 288 61.5
BolC5t29432H Brassica oleracea HOM05D005617 ORTHO05D006847 4.3e-92 342.0 288 61.5
Cfa006341 Carpinus fangiana HOM05D005617 ORTHO05D006548 5.6e-92 341.7 253 71.1
Carub.0001s0800 Capsella rubella HOM05D005617 ORTHO05D006847 7.3e-92 341.3 290 64.5
ATR0736G212 Amborella trichopoda HOM05D005617 ORTHO05D006847 1.6e-91 340.1 233 71.7
AT1G08640 Arabidopsis thaliana HOM05D005617 ORTHO05D006847 1.6e-91 340.1 290 65.2
Nitab4.5_0003768g0040 Nicotiana tabacum HOM05D005617 ORTHO05D006847 2.1e-91 339.7 222 77.5
Lsat_1_v5_gn_2_108021 Lactuca sativa HOM05D005617 ORTHO05D006847 3.6e-91 339.0 219 76.3
Peaxi162Scf00135g00418 Petunia axillaris HOM05D005617 ORTHO05D006847 3.6e-91 339.0 243 72.4
Rhsim09G0137600 Rhododendron simsii HOM05D005617 ORTHO05D006847 1.8e-90 336.7 279 63.8
BcaB03g13320 Brassica carinata HOM05D005617 ORTHO05D006847 1.2e-89 334.0 285 63.5
BcaB07g34105 Brassica carinata HOM05D005617 ORTHO05D006847 5.8e-89 331.6 275 64.7
Nitab4.5_0003780g0030 Nicotiana tabacum HOM05D005617 ORTHO05D006847 2.2e-88 329.7 221 76.5
unitig_32.g10679 Utricularia gibba HOM05D005617 ORTHO05D006847 2.9e-88 329.3 247 69.2
FAN14G1026 Fragaria x ananassa HOM05D001473 ORTHO05D003934 1.9e-87 326.6 265 64.2
A06p05600 Brassica napus HOM05D005617 ORTHO05D006847 1.0e-85 320.9 279 61.6
Aa31sc110G20 Aethionema arabicum HOM05D005617 ORTHO05D006847 1.9e-84 316.6 222 70.7
MELO3C020566.2 Cucumis melo HOM05D005617 ORTHO05D006847 8.1e-83 311.2 298 59.4
CDE04G1987 Ceratophyllum demersum HOM05D005617 ORTHO05D006847 1.5e-81 307.0 244 68.0
Hund22155 Selenicereus undatus HOM05D005617 ORTHO05D006847 5.8e-81 305.1 295 59.3
Sabra13G0042400 Salix brachista HOM05D005617 ORTHO05D006847 1.7e-80 303.5 277 60.6
SEGI_39921 Sequoiadendron giganteum HOM05D005617 ORTHO05D006847 2.2e-80 303.1 253 60.1
Haze_04439 Corylus avellana HOM05D005617 ORTHO05D006847 8.4e-80 301.2 284 60.6
FAN09G1753 Fragaria x ananassa HOM05D001473 ORTHO05D003934 7.1e-79 298.1 244 64.8
FvH4_6g01960 Fragaria vesca HOM05D005617 ORTHO05D006847 2.7e-78 296.2 243 64.2
ClCG03G000920 Citrullus lanatus HOM05D005617 ORTHO05D006847 3.0e-77 292.7 196 78.6
AUR62040935 Chenopodium quinoa HOM05D005617 ORTHO05D006847 6.2e-75 285.0 184 76.6
Nn1g08261 Nelumbo nucifera HOM05D005617 ORTHO05D006847 6.2e-75 285.0 235 66.4
Atru.chr2.967 Acer truncatum HOM05D005617 ORTHO05D006847 1.2e-70 270.8 176 77.3
Mapoly0036s0041 Marchantia polymorpha HOM05D005617 ORTHO05D006847 2.1e-70 270.0 255 54.5
Zm00001eb261540 Zea mays HOM05D005617 ORTHO05D006847 2.1e-70 270.0 290 50.7
Ca_09461_v3 Cicer arietinum L. HOM05D005617 ORTHO05D006847 4.6e-70 268.9 174 76.4
SGA_v2.0_scaffold380G50362 Striga asiatica HOM05D005617 ORTHO05D006847 1.0e-69 267.7 288 54.2
Os08g0127600 Oryza sativa ssp. japonica HOM05D005617 ORTHO05D006847 2.3e-69 266.5 223 58.3
Os10g0478100 Oryza sativa ssp. japonica HOM05D005617 ORTHO05D006847 1.7e-64 250.4 297 47.8
SMO116G0251 Selaginella moellendorffii HOM05D005617 ORTHO05D006847 3.8e-64 249.2 238 53.8
AagrBONN_evm.TU.Sc2ySwM_344.3205 Anthoceros agrestis HOM05D005617 ORTHO05D006847 1.9e-60 236.9 255 49.0
Pp3c23_15250 Physcomitrium patens HOM05D005617 ORTHO05D006847 4.3e-60 235.7 233 52.8
vmacro10358 Vaccinium macrocarpon HOM05D005617 ORTHO05D006847 2.6e-57 226.5 249 49.8
FAN02G1215 Fragaria x ananassa HOM05D001473 ORTHO05D003934 2.9e-56 223.0 269 49.1
Zm00001eb173360 Zea mays HOM05D005617 ORTHO05D006847 3.8e-56 222.6 255 49.4
C08p12050 Brassica napus HOM05D005617 ORTHO05D006847 5.1e-53 212.2 237 54.0
Cpa.g.sc162.39 Carica papaya HOM05D005617 ORTHO05D006847 9.3e-47 191.4 169 60.4
CDE04G2248 Ceratophyllum demersum HOM05D005617 ORTHO05D006847 3.0e-45 186.4 113 82.3
TAR365G0454 Trochodendron aralioides HOM05D005617 ORTHO05D006847 3.9e-45 186.0 227 49.8
Sabra19G0030400 Salix brachista HOM05D001473 ORTHO05D003934 1.1e-39 167.9 131 68.7
CBR_g63068 Chara braunii HOM05D005617 ORTHO05D006847 1.5e-36 157.5 224 40.2
TPR.G11236 Trifolium pratense HOM05D005617 ORTHO05D006847 1.7e-35 154.1 112 67.0
BcaC07g38407 Brassica carinata HOM05D005617 ORTHO05D006847 9.4e-31 138.3 133 54.1
SHI23140 Sapria himalayana HOM05D005617 ORTHO05D001257 1.2e-30 137.9 192 41.7
Cpa.g.c45301 Carica papaya HOM05D005617 ORTHO05D006847 1.7e-27 127.5 75 82.7
C08p11620 Brassica napus HOM05D005617 ORTHO05D006847 8.2e-27 125.2 81 70.4
C08p11690 Brassica napus HOM05D005617 ORTHO05D006847 8.2e-27 125.2 81 69.1
C08p11650 Brassica napus HOM05D005617 ORTHO05D006847 7.0e-26 122.1 81 69.1
BolC8t48841H Brassica oleracea HOM05D005617 ORTHO05D006847 6.5e-24 115.5 82 68.3
PRCOL_00003784 Prasinoderma coloniale HOM05D005182 ORTHO05D006847 1.8e-18 97.4 140 35.0
PRCOL_00005829 Prasinoderma coloniale HOM05D005617 ORTHO05D006847 7.7e-17 92.0 198 30.8
BcaC07g38438 Brassica carinata HOM05D005617 ORTHO05D006847 6.5e-16 89.0 80 60.0
TPR.G6979 Trifolium pratense HOM05D005617 ORTHO05D006847 1.0e-13 81.6 76 53.9
Atru.chr2.966 Acer truncatum HOM05D005617 ORTHO05D006847 1.2e-12 78.2 54 72.2
BcaB01g02218 Brassica carinata HOM05D005617 ORTHO05D006847 5.7e-12 75.9 53 73.6
Rhsim04G0044500 Rhododendron simsii HOM05D005617 ORTHO05D000521 9.7e-12 75.1 70 55.7
TPR.G21937 Trifolium pratense HOM05D005617 ORTHO05D006847 9.7e-12 75.1 60 65.0
FvH4_6g01860 Fragaria vesca HOM05D005617 ORTHO05D006847 3.1e-10 70.1 101 41.6
FAN14G4186 Fragaria x ananassa HOM05D005617 ORTHO05D006847 3.1e-10 70.1 101 41.6
FAN14G5978 Fragaria x ananassa HOM05D005617 ORTHO05D006847 3.1e-10 70.1 101 41.6
FAN14G3066 Fragaria x ananassa HOM05D005617 ORTHO05D006847 5.3e-10 69.3 101 41.6
FAN09G3889 Fragaria x ananassa HOM05D005617 ORTHO05D006847 1.2e-09 68.2 101 40.6
Phvul.005G084700 Phaseolus vulgaris HOM05D005617 ORTHO05D006847 2.2e-08 63.9 129 38.0
Cre03.g171100 Chlamydomonas reinhardtii HOM05D005617 ORTHO05D006847 6.5e-08 62.4 274 26.3


User provided reference genes

Program Settings