Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.L02935 Eucalyptus grandis HOM05D005943 ORTHO05D007328 1.3e-97 359.8 180 100.0
Ciclev10002634m.g Citrus clementina HOM05D005943 ORTHO05D007328 3.8e-94 348.2 177 96.0
CSS0008719 Camellia sinensis var. sinensis HOM05D005943 ORTHO05D007328 1.4e-93 346.3 177 96.0
CiPaw.07G023200 Carya illinoinensis HOM05D005943 ORTHO05D007328 1.4e-93 346.3 177 96.0
Thecc.05G315300 Theobroma cacao HOM05D005943 ORTHO05D007328 1.4e-93 346.3 177 96.0
Cpa.g.sc48.107 Carica papaya HOM05D005943 ORTHO05D007328 1.9e-93 345.9 177 95.5
CANSAT35G1584 Cannabis sativa HOM05D005943 ORTHO05D007328 3.2e-93 345.1 177 94.9
PGR031G0471 Punica granatum HOM05D005943 ORTHO05D007328 3.2e-93 345.1 177 96.6
Dinv40356 Davidia involucrata HOM05D005943 ORTHO05D007328 4.2e-93 344.7 177 94.9
Duzib177G0451 Durio zibethinus HOM05D005943 ORTHO05D007328 5.4e-93 344.4 177 95.5
Dinv30834 Davidia involucrata HOM05D005943 ORTHO05D007328 7.1e-93 344.0 177 94.9
TWI56G0702 Tripterygium wilfordii HOM05D005943 ORTHO05D007328 9.3e-93 343.6 177 95.5
GSVIVG01031169001 Vitis vinifera HOM05D005943 ORTHO05D007328 1.2e-92 343.2 177 94.4
Gohir.A11G269200 Gossypium hirsutum HOM05D005943 ORTHO05D007328 1.6e-92 342.8 177 94.9
Gohir.D11G279400 Gossypium hirsutum HOM05D005943 ORTHO05D007328 1.6e-92 342.8 177 94.9
Potri.005G023600 Populus trichocarpa HOM05D005943 ORTHO05D007328 1.6e-92 342.8 177 94.4
Potri.013G013700 Populus trichocarpa HOM05D005943 ORTHO05D007328 1.6e-92 342.8 177 94.4
unitig_0.g32 Utricularia gibba HOM05D005943 ORTHO05D007328 1.6e-92 342.8 177 94.9
RcHm_v2.0_Chr3g0456101 Rosa chinensis HOM05D005943 ORTHO05D007328 2.1e-92 342.4 177 95.5
MSTRG.4510 Avicennia marina HOM05D005943 ORTHO05D007328 2.7e-92 342.0 177 94.9
CsaV3_1G038680 Cucumis sativus L. HOM05D005943 ORTHO05D007328 2.7e-92 342.0 177 94.9
Gorai.007G301600 Gossypium raimondii HOM05D005943 ORTHO05D007328 3.5e-92 341.7 177 94.4
Migut.E01764 Erythranthe guttata HOM05D005943 ORTHO05D007328 1.0e-91 340.1 177 94.4
QL03p019642 Quercus lobata HOM05D005943 ORTHO05D007328 1.0e-91 340.1 177 94.4
Cc02_g34350 Coffea canephora HOM05D005943 ORTHO05D007328 1.3e-91 339.7 177 93.2
Glyma.06G132000 Glycine max HOM05D005943 ORTHO05D007328 1.3e-91 339.7 177 92.7
Haze_04120 Corylus avellana HOM05D005943 ORTHO05D007328 1.8e-91 339.3 173 96.0
Lj1g0013041 Lotus japonicus HOM05D005943 ORTHO05D007328 1.8e-91 339.3 177 93.2
Phvul.009G047900 Phaseolus vulgaris HOM05D005943 ORTHO05D007328 1.8e-91 339.3 177 92.7
Solyc01g099890.3 Solanum lycopersicum HOM05D005943 ORTHO05D007328 1.8e-91 339.3 177 94.4
Sopen01g043410 Solanum pennellii HOM05D005943 ORTHO05D007328 1.8e-91 339.3 177 94.4
Ca_16733_v3 Cicer arietinum L. HOM05D005943 ORTHO05D007328 2.3e-91 339.0 177 92.7
HanXRQChr11g0339821 Helianthus annuus HOM05D005943 ORTHO05D007328 2.3e-91 339.0 177 93.8
Manes.08G116100 Manihot esculenta HOM05D005943 ORTHO05D007328 3.0e-91 338.6 177 92.7
ATR0796G119 Amborella trichopoda HOM05D005943 ORTHO05D007328 3.9e-91 338.2 176 94.3
Glyma.04G232900 Glycine max HOM05D005943 ORTHO05D007328 3.9e-91 338.2 177 92.7
Lalb_Chr11g0067091 Lupinus albus HOM05D005943 ORTHO05D007328 6.7e-91 337.4 177 91.5
Lalb_Chr23g0271691 Lupinus albus HOM05D005943 ORTHO05D007328 6.7e-91 337.4 177 92.1
MD12G1211900 Malus domestica HOM05D005943 ORTHO05D007328 6.7e-91 337.4 177 92.7
Aqoxy5G00777 Aquilegia oxysepala HOM05D005943 ORTHO05D007328 8.7e-91 337.0 177 92.7
MD04G1198400 Malus domestica HOM05D005943 ORTHO05D007328 8.7e-91 337.0 177 92.7
COL.COLO4_10548 Corchorus olitorius HOM05D005943 ORTHO05D007328 1.1e-90 336.7 174 94.3
Prupe.6G319400 Prunus persica HOM05D005943 ORTHO05D007328 1.1e-90 336.7 177 93.8
Nn3g21529 Nelumbo nucifera HOM05D005943 ORTHO05D007328 1.5e-90 336.3 177 91.0
Nn4g25770 Nelumbo nucifera HOM05D005943 ORTHO05D007328 1.5e-90 336.3 176 92.6
Sed0012379 Sechium edule HOM05D005943 ORTHO05D007328 1.9e-90 335.9 177 92.7
Duzib128G1848 Durio zibethinus HOM05D005943 ORTHO05D007328 2.5e-90 335.5 176 94.9
Psat3g152320 Pisum sativum HOM05D005943 ORTHO05D007328 3.3e-90 335.1 177 91.0
TPR.G33656 Trifolium pratense HOM05D005943 ORTHO05D007328 3.3e-90 335.1 176 90.9
ECA236G0332 Erigeron canadensis HOM05D005943 ORTHO05D007328 4.3e-90 334.7 177 92.1
PSO170G5805 Papaver somniferum HOM05D005943 ORTHO05D007328 7.4e-90 334.0 177 91.5
PSO407G0008 Papaver somniferum HOM05D005943 ORTHO05D007328 7.4e-90 334.0 177 91.5
Sed0027178 Sechium edule HOM05D005943 ORTHO05D007328 9.6e-90 333.6 177 92.1
Sabra13G0012200 Salix brachista HOM05D001727 ORTHO05D007328 1.3e-89 333.2 176 92.0
Atru.chr2.102 Acer truncatum HOM05D001727 ORTHO05D001758 1.6e-89 332.8 172 94.8
CDE02G2801 Ceratophyllum demersum HOM05D005943 ORTHO05D007328 1.6e-89 332.8 177 91.0
AUR62005222 Chenopodium quinoa HOM05D005943 ORTHO05D007328 1.6e-89 332.8 177 89.8
MELO3C015293.2 Cucumis melo HOM05D001727 ORTHO05D001758 2.8e-89 332.0 173 93.6
Sc06g0003910 Simmondsia chinensis HOM05D005943 ORTHO05D007328 2.8e-89 332.0 177 91.0
PGSC0003DMG400024722 Solanum tuberosum HOM05D005943 ORTHO05D007328 3.6e-89 331.6 177 92.1
TWI12G0949 Tripterygium wilfordii HOM05D005943 ORTHO05D007328 3.6e-89 331.6 172 95.9
Medtr3g091920 Medicago truncatula HOM05D005943 ORTHO05D007328 4.8e-89 331.3 174 91.4
Rhsim05G0137500 Rhododendron simsii HOM05D005943 ORTHO05D007328 4.8e-89 331.3 196 85.7
HPP92_018258 Vanilla planifolia HOM05D005943 ORTHO05D007328 8.1e-89 330.5 177 89.3
SGA_v2.0_scaffold42G16032 Striga asiatica HOM05D005943 ORTHO05D007328 1.8e-88 329.3 194 86.6
Sabra05G0029200 Salix brachista HOM05D001727 ORTHO05D050481 2.4e-88 328.9 173 92.5
Lsat_1_v5_gn_7_72860 Lactuca sativa HOM05D005943 ORTHO05D007328 3.1e-88 328.6 174 91.4
Os01g0314300 Oryza sativa ssp. japonica HOM05D005943 ORTHO05D007328 5.3e-88 327.8 177 89.3
Oeu048875.1 Olea europaea HOM05D005943 ORTHO05D007328 2.6e-87 325.5 177 92.7
Mapoly0028s0141 Marchantia polymorpha HOM05D005943 ORTHO05D007328 3.4e-87 325.1 176 88.6
AagrBONN_evm.TU.Sc2ySwM_228.5507 Anthoceros agrestis HOM05D005943 ORTHO05D007328 5.8e-87 324.3 176 88.6
DCAR_022176 Daucus carota HOM05D005943 ORTHO05D007328 5.8e-87 324.3 189 86.2
Hund07108 Selenicereus undatus HOM05D005943 ORTHO05D007328 2.2e-86 322.4 173 89.6
Pp3c25_690 Physcomitrium patens HOM05D005943 ORTHO05D007328 7.1e-85 317.4 176 85.8
THA.LOC104805894 Tarenaya hassleriana HOM05D005943 ORTHO05D007328 1.2e-84 316.6 177 85.9
Thhalv10008886m.g Eutrema salsugineum HOM05D005943 ORTHO05D007328 3.5e-84 315.1 177 86.4
Sp1g07730 Schrenkiella parvula HOM05D005943 ORTHO05D007328 6.0e-84 314.3 177 85.9
CARHR009020 Cardamine hirsuta HOM05D005943 ORTHO05D007328 1.3e-83 313.2 177 85.3
BcaC05g24766 Brassica carinata HOM05D005943 ORTHO05D007328 1.8e-83 312.8 177 85.9
Peaxi162Scf00037g01419 Petunia axillaris HOM05D005943 ORTHO05D007328 3.0e-83 312.0 173 89.6
BraA06t23801Z Brassica rapa HOM05D005943 ORTHO05D007328 5.1e-83 311.2 177 85.3
THA.LOC104820740 Tarenaya hassleriana HOM05D005943 ORTHO05D007328 1.1e-82 310.1 173 87.3
AT1G09150 Arabidopsis thaliana HOM05D005943 ORTHO05D007328 1.9e-82 309.3 177 84.7
AL1G19590 Arabidopsis lyrata HOM05D005943 ORTHO05D007328 2.5e-82 308.9 177 84.2
C08p12460 Brassica napus HOM05D005943 ORTHO05D007328 4.3e-82 308.1 176 84.1
BolC8t48886H Brassica oleracea HOM05D005943 ORTHO05D007328 5.6e-82 307.8 175 84.6
Carub.0001s0844 Capsella rubella HOM05D005943 ORTHO05D007328 9.6e-82 307.0 177 83.6
EL10Ac4g09897 Beta vulgaris HOM05D005943 ORTHO05D007328 1.3e-81 306.6 177 85.3
MD04G1083700 Malus domestica HOM05D005943 ORTHO05D007328 1.6e-81 306.2 203 77.8
A06p05940 Brassica napus HOM05D005943 ORTHO05D007328 6.2e-81 304.3 174 84.5
C05p07140 Brassica napus HOM05D005943 ORTHO05D007328 6.2e-81 304.3 174 84.5
C08p12470 Brassica napus HOM05D005943 ORTHO05D007328 8.1e-81 303.9 176 83.0
A08p34800 Brassica napus HOM05D005943 ORTHO05D007328 2.4e-80 302.4 174 83.3
Nitab4.5_0003113g0010 Nicotiana tabacum HOM05D005943 ORTHO05D007328 1.5e-79 299.7 177 86.4
Nitab4.5_0003497g0010 Nicotiana tabacum HOM05D005943 ORTHO05D007328 6.5e-78 294.3 155 94.8
arahy.Tifrunner.gnm1.ann1.KZ6QJ9 Arachis hypogaea HOM05D005943 ORTHO05D007328 7.1e-77 290.8 155 92.3
FAN02G3650 Fragaria x ananassa HOM05D005943 ORTHO05D007328 2.7e-76 288.9 177 81.4
FAN09G2521 Fragaria x ananassa HOM05D005943 ORTHO05D007328 3.5e-76 288.5 177 81.4
VMungo1309G2765 Vigna mungo HOM05D005943 ORTHO05D007328 3.5e-76 288.5 148 91.2
SMO169G0068 Selaginella moellendorffii HOM05D005943 ORTHO05D007328 6.0e-76 287.7 176 81.2
Lj7A623G46 Lonicera japonica HOM05D005943 ORTHO05D007328 1.0e-75 287.0 151 94.7
BcaC07g38477 Brassica carinata HOM05D005943 ORTHO05D007328 5.7e-74 281.2 178 79.8
AUR62000742 Chenopodium quinoa HOM05D005943 ORTHO05D007328 1.6e-73 279.6 155 87.1
CDE09G0522 Ceratophyllum demersum HOM05D005943 ORTHO05D007328 1.1e-72 276.9 144 90.3
Aa31sc55G100 Aethionema arabicum HOM05D005943 ORTHO05D007328 7.2e-69 264.2 155 84.5
FvH4_6g06770 Fragaria vesca HOM05D005943 ORTHO05D007328 1.3e-67 260.0 184 76.6
Atru.chr6.2339 Acer truncatum HOM05D005943 ORTHO05D007328 3.3e-66 255.4 176 76.1
BraA08t35391Z Brassica rapa HOM05D005943 ORTHO05D007328 6.3e-65 251.1 139 84.2
vmacro19698 Vaccinium macrocarpon HOM05D005943 ORTHO05D007328 2.6e-63 245.7 122 95.1
Zm00001eb339860 Zea mays HOM05D005943 ORTHO05D007328 2.9e-62 242.3 125 92.0
arahy.Tifrunner.gnm1.ann1.2NZ4WG Arachis hypogaea HOM05D000716 ORTHO05D004822 5.0e-62 241.5 126 90.5
PRCOL_00003880 Prasinoderma coloniale HOM05D005943 ORTHO05D007328 1.3e-57 226.9 179 61.5
SalBow1G5257 Salvia bowleyana HOM05D005943 ORTHO05D007328 2.2e-57 226.1 181 69.1
Haze_26177 Corylus avellana HOM05D005943 ORTHO05D007328 5.3e-56 221.5 177 59.3
MCO12G098 Micromonas commoda HOM05D005943 ORTHO05D007328 2.9e-54 215.7 179 60.9
Eucgr.H03253 Eucalyptus grandis HOM05D005943 ORTHO05D007328 6.7e-51 204.5 100 99.0
MBI18_g25341_MAGBIO Magnolia biondii HOM05D005943 ORTHO05D007328 8.2e-49 197.6 100 95.0
Phvul.009G047833 Phaseolus vulgaris HOM05D005943 ORTHO05D007328 1.8e-48 196.4 100 92.0
TAR362G1289 Trochodendron aralioides HOM05D005943 ORTHO05D007328 2.4e-48 196.1 100 94.0
SEGI_36457 Sequoiadendron giganteum HOM05D005943 ORTHO05D007328 3.5e-47 192.2 101 90.1
Duzib106G1343 Durio zibethinus HOM05D005943 ORTHO05D007328 5.0e-46 188.3 179 62.6
TAR633G1587 Trochodendron aralioides HOM05D005943 ORTHO05D007328 2.0e-42 176.4 154 64.3
HPP92_018260 Vanilla planifolia HOM05D005943 ORTHO05D007328 7.5e-42 174.5 95 87.4
Eucgr.H03249 Eucalyptus grandis HOM05D005943 ORTHO05D007328 1.7e-41 173.3 86 97.7
Eucgr.H03239 Eucalyptus grandis HOM05D005943 ORTHO05D007328 4.1e-40 168.7 87 95.4
BcaC07g38474 Brassica carinata HOM05D005943 ORTHO05D007328 3.8e-38 162.2 89 84.3
CBR_g36436 Chara braunii HOM05D005943 ORTHO05D007328 2.5e-37 159.5 89 82.0
Cre50.g761397 Chlamydomonas reinhardtii HOM05D005943 ORTHO05D007328 2.2e-33 146.4 127 57.5
CBR_g20980 Chara braunii HOM05D005943 ORTHO05D007328 2.4e-32 142.9 87 80.5
Eucgr.H03245 Eucalyptus grandis HOM05D005943 ORTHO05D007328 1.0e-30 137.5 87 82.8
ClCG03G017220 Citrullus lanatus HOM05D001727 ORTHO05D001758 1.5e-29 133.7 66 95.5
Eucgr.H03250 Eucalyptus grandis HOM05D005943 ORTHO05D007328 1.5e-26 123.6 70 91.4
EL10Ac5g11162 Beta vulgaris HOM05D005943 ORTHO05D007328 2.2e-25 119.8 77 79.2
Nn1g03974 Nelumbo nucifera HOM05D005943 ORTHO05D007328 1.5e-18 97.1 51 84.3
Duzib093G1290 Durio zibethinus HOM05D005117 ORTHO05D005956 5.9e-15 85.1 182 31.3
SEGI_40081 Sequoiadendron giganteum HOM05D005943 ORTHO05D007328 6.6e-14 81.6 49 81.6
Phvul.011G215800 Phaseolus vulgaris HOM05D005117 ORTHO05D005956 1.9e-13 80.1 182 31.9
Lalb_Chr03g0033811 Lupinus albus HOM05D005117 ORTHO05D005956 2.5e-13 79.7 182 30.2
VMungo1127G0019 Vigna mungo HOM05D005117 ORTHO05D005956 9.5e-13 77.8 182 30.8
PGR004G2811 Punica granatum HOM05D005117 ORTHO05D005956 2.1e-12 76.6 182 30.2
Thecc.08G180900 Theobroma cacao HOM05D005117 ORTHO05D005956 2.1e-12 76.6 182 29.7
Cre03.g168605 Chlamydomonas reinhardtii HOM05D005943 ORTHO05D007328 2.8e-12 76.3 53 69.8
TWI12G0486 Tripterygium wilfordii HOM05D005117 ORTHO05D005956 8.0e-12 74.7 182 29.1
MSTRG.25503 Avicennia marina HOM05D005117 ORTHO05D005956 1.4e-11 73.9 182 29.7
Manes.18G111600 Manihot esculenta HOM05D005117 ORTHO05D005956 1.8e-11 73.6 182 28.0
Ciclev10019359m.g Citrus clementina HOM05D005117 ORTHO05D005956 2.3e-11 73.2 181 28.2
Medtr4g030200 Medicago truncatula HOM05D005117 ORTHO05D005956 1.2e-10 70.9 182 28.6
CBR_g6708 Chara braunii HOM05D005117 ORTHO05D005956 5.8e-10 68.6 180 31.1
Lj9A696G55 Lonicera japonica HOM05D005117 ORTHO05D005956 2.9e-09 66.2 198 25.3
Glyma.09G001900 Glycine max HOM05D005117 ORTHO05D005956 1.1e-08 64.3 137 30.7


User provided reference genes

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