Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.L02881 Eucalyptus grandis HOM05D000204 ORTHO05D003771 8.8e-50 199.9 96 100.0
COL.COLO4_38479 Corchorus olitorius HOM05D000204 ORTHO05D003771 4.1e-15 84.7 111 44.1
FAN06G2042 Fragaria x ananassa HOM05D000204 ORTHO05D003771 2.1e-14 82.4 113 43.4
FAN10G2769 Fragaria x ananassa HOM05D000204 ORTHO05D003771 3.5e-14 81.6 113 42.5
FAN10G3417 Fragaria x ananassa HOM05D000204 ORTHO05D003771 6.0e-14 80.9 113 41.6
TWI77G0312 Tripterygium wilfordii HOM05D000204 ORTHO05D003771 7.8e-14 80.5 104 48.1
FvH4_7g19120 Fragaria vesca HOM05D000204 ORTHO05D003771 1.7e-13 79.3 113 42.5
FAN06G4492 Fragaria x ananassa HOM05D000204 ORTHO05D003771 1.7e-13 79.3 113 42.5
TAR633G0048 Trochodendron aralioides HOM05D000204 ORTHO05D003771 1.7e-13 79.3 90 51.1
Lalb_Chr01g0018731 Lupinus albus HOM05D000204 ORTHO05D003771 2.3e-13 79.0 113 43.4
Lj5g0019447 Lotus japonicus HOM05D000204 ORTHO05D003771 3.0e-13 78.6 97 46.4
QL08p055331 Quercus lobata HOM05D000204 ORTHO05D003771 3.9e-13 78.2 81 51.9
QL07p044058 Quercus lobata HOM05D000204 ORTHO05D003771 5.1e-13 77.8 114 42.1
VMungo0720G3008 Vigna mungo HOM05D000204 ORTHO05D003771 6.6e-13 77.4 107 44.9
TAR636G1559 Trochodendron aralioides HOM05D000204 ORTHO05D003771 1.1e-12 76.6 86 51.2
TAR636G2405 Trochodendron aralioides HOM05D000204 ORTHO05D003771 1.5e-12 76.3 86 50.0
CSS0000549 Camellia sinensis var. sinensis HOM05D000204 ORTHO05D003771 3.3e-12 75.1 86 47.7
Gohir.D09G144300 Gossypium hirsutum HOM05D000204 ORTHO05D003771 4.3e-12 74.7 104 41.3
Gorai.006G165600 Gossypium raimondii HOM05D000204 ORTHO05D003771 4.3e-12 74.7 104 41.3
Medtr1g063950 Medicago truncatula HOM05D000204 ORTHO05D003771 4.3e-12 74.7 100 44.0
Prupe.2G211600 Prunus persica HOM05D000057 ORTHO05D003771 4.3e-12 74.7 78 52.6
Thecc.10G076800 Theobroma cacao HOM05D000204 ORTHO05D003771 5.6e-12 74.3 123 38.2
Gohir.A09G148500 Gossypium hirsutum HOM05D000204 ORTHO05D003771 7.3e-12 73.9 104 41.3
CiPaw.09G174100 Carya illinoinensis HOM05D000204 ORTHO05D003771 1.2e-11 73.2 86 45.3
Lj1g0017132 Lotus japonicus HOM05D000204 ORTHO05D003771 1.2e-11 73.2 86 44.2
Manes.08G008700 Manihot esculenta HOM05D000204 ORTHO05D003771 1.2e-11 73.2 86 47.7
Nn2g11521 Nelumbo nucifera HOM05D000204 ORTHO05D003771 1.2e-11 73.2 88 43.2
GSVIVG01025708001 Vitis vinifera HOM05D000204 ORTHO05D003771 1.2e-11 73.2 86 46.5
Psat6g072240 Pisum sativum HOM05D000204 ORTHO05D003771 1.6e-11 72.8 110 41.8
Rhsim04G0145000 Rhododendron simsii HOM05D000204 ORTHO05D003771 1.6e-11 72.8 87 46.0
ClCG04G009170 Citrullus lanatus HOM05D000204 ORTHO05D003771 2.1e-11 72.4 86 46.5
MELO3C014219.2 Cucumis melo HOM05D000204 ORTHO05D003771 2.1e-11 72.4 86 46.5
Peaxi162Scf00123g01125 Petunia axillaris HOM05D000204 ORTHO05D003771 2.1e-11 72.4 91 45.1
Thecc.05G063000 Theobroma cacao HOM05D000204 ORTHO05D003771 2.1e-11 72.4 114 42.1
Ciclev10033937m.g Citrus clementina HOM05D000204 ORTHO05D003771 2.8e-11 72.0 84 50.0
Glyma.13G144700 Glycine max HOM05D000204 ORTHO05D003771 2.8e-11 72.0 87 48.3
FAN01G1815 Fragaria x ananassa HOM05D000204 ORTHO05D003771 3.6e-11 71.6 112 40.2
TPR.G35224 Trifolium pratense HOM05D000204 ORTHO05D003771 3.6e-11 71.6 100 44.0
Gorai.009G416100 Gossypium raimondii HOM05D000204 ORTHO05D003771 6.2e-11 70.9 114 39.5
Manes.09G064000 Manihot esculenta HOM05D000204 ORTHO05D003771 6.2e-11 70.9 86 45.3
Potri.016G091500 Populus trichocarpa HOM05D000204 ORTHO05D003771 6.2e-11 70.9 93 43.0
Phvul.007G150200 Phaseolus vulgaris HOM05D000204 ORTHO05D003771 8.1e-11 70.5 101 44.6
Potri.010G224500 Populus trichocarpa HOM05D000204 ORTHO05D003771 8.1e-11 70.5 80 47.5
TPR.G9364 Trifolium pratense HOM05D000204 ORTHO05D003771 8.1e-11 70.5 82 48.8
arahy.Tifrunner.gnm1.ann1.RF4W67 Arachis hypogaea HOM05D000204 ORTHO05D003771 1.1e-10 70.1 72 52.8
arahy.Tifrunner.gnm1.ann1.Z2K0CV Arachis hypogaea HOM05D000204 ORTHO05D003771 1.1e-10 70.1 72 52.8
Ca_11486_v3 Cicer arietinum L. HOM05D000204 ORTHO05D003771 1.1e-10 70.1 82 47.6
COL.COLO4_26988 Corchorus olitorius HOM05D000204 ORTHO05D003771 1.1e-10 70.1 122 40.2
Dinv35768 Davidia involucrata HOM05D000057 ORTHO05D003771 1.1e-10 70.1 114 39.5
Duzib106G0717 Durio zibethinus HOM05D000204 ORTHO05D003771 1.1e-10 70.1 105 41.9
Lj2P115T39 Lonicera japonica HOM05D000204 ORTHO05D003771 1.1e-10 70.1 80 46.2
Sabra16G0096700 Salix brachista HOM05D000204 ORTHO05D003771 1.1e-10 70.1 76 50.0
Gohir.D04G112000 Gossypium hirsutum HOM05D000204 ORTHO05D003771 1.4e-10 69.7 114 38.6
Haze_20574 Corylus avellana HOM05D000204 ORTHO05D003771 1.8e-10 69.3 87 43.7
Glyma.10G057900 Glycine max HOM05D000204 ORTHO05D003771 1.8e-10 69.3 89 48.3
Gohir.A04G073100 Gossypium hirsutum HOM05D000204 ORTHO05D003771 1.8e-10 69.3 114 40.4
Phvul.001G178200 Phaseolus vulgaris HOM05D000204 ORTHO05D003771 1.8e-10 69.3 93 43.0
Thhalv10011019m.g Eutrema salsugineum HOM05D000204 ORTHO05D003771 2.4e-10 68.9 108 37.0
Nitab4.5_0000101g0320 Nicotiana tabacum HOM05D000204 ORTHO05D003771 2.4e-10 68.9 91 44.0
RcHm_v2.0_Chr1g0362991 Rosa chinensis HOM05D000057 ORTHO05D003771 2.4e-10 68.9 113 38.9
Sed0026948 Sechium edule HOM05D000204 ORTHO05D003771 3.1e-10 68.6 86 44.2
Cc06_g04040 Coffea canephora HOM05D000204 ORTHO05D003771 4.0e-10 68.2 83 42.2
Ciclev10013508m.g Citrus clementina HOM05D000204 ORTHO05D003771 5.2e-10 67.8 113 38.1
PSO339G3068 Papaver somniferum HOM05D000057 ORTHO05D003771 5.2e-10 67.8 71 47.9
SalBow3G0674 Salvia bowleyana HOM05D000057 ORTHO05D003771 5.2e-10 67.8 103 39.8
Atru.chr8.1849 Acer truncatum HOM05D000204 ORTHO05D003771 6.8e-10 67.4 112 40.2
CANSAT80G0770 Cannabis sativa HOM05D000057 ORTHO05D003771 6.8e-10 67.4 72 44.4
CAN.G622.8 Capsicum annuum HOM05D000204 ORTHO05D003771 6.8e-10 67.4 91 42.9
Potri.008G037900 Populus trichocarpa HOM05D000204 ORTHO05D003771 6.8e-10 67.4 68 52.9
Sp5g09090 Schrenkiella parvula HOM05D000057 ORTHO05D003771 6.8e-10 67.4 115 36.5
Duzib128G1331 Durio zibethinus HOM05D000204 ORTHO05D003771 8.9e-10 67.0 120 39.2
PSO063G0963 Papaver somniferum HOM05D000057 ORTHO05D003771 8.9e-10 67.0 74 44.6
Phvul.007G096400 Phaseolus vulgaris HOM05D000204 ORTHO05D003771 1.2e-09 66.6 101 46.5
Glyma.03G182100 Glycine max HOM05D000204 ORTHO05D003771 1.5e-09 66.2 94 43.6
Nn2g13730 Nelumbo nucifera HOM05D000204 ORTHO05D003771 1.5e-09 66.2 84 45.2
Prupe.6G234900 Prunus persica HOM05D000204 ORTHO05D003771 1.5e-09 66.2 86 46.5
RcHm_v2.0_Chr3g0469951 Rosa chinensis HOM05D000204 ORTHO05D003771 1.5e-09 66.2 88 46.6
Solyc09g007970.3 Solanum lycopersicum HOM05D000204 ORTHO05D003771 1.5e-09 66.2 94 40.4
PGSC0003DMG400021565 Solanum tuberosum HOM05D000204 ORTHO05D003771 1.5e-09 66.2 94 40.4
THA.LOC104823459 Tarenaya hassleriana HOM05D000204 ORTHO05D003771 2.0e-09 65.9 110 39.1
BcaB01g00296 Brassica carinata HOM05D000204 ORTHO05D003771 2.6e-09 65.5 74 44.6
BcaC07g39686 Brassica carinata HOM05D000204 ORTHO05D003771 2.6e-09 65.5 116 36.2
A09p46280 Brassica napus HOM05D000204 ORTHO05D003771 2.6e-09 65.5 116 36.2
BraA09t40091Z Brassica rapa HOM05D000204 ORTHO05D003771 2.6e-09 65.5 116 36.2
CAN.G509.14 Capsicum annuum HOM05D000057 ORTHO05D003771 2.6e-09 65.5 92 41.3
MSTRG.5752 Avicennia marina HOM05D000057 ORTHO05D003771 3.4e-09 65.1 89 42.7
A07p21480 Brassica napus HOM05D000057 ORTHO05D003771 3.4e-09 65.1 106 36.8
C06p21080 Brassica napus HOM05D000057 ORTHO05D003771 3.4e-09 65.1 106 37.7
C08p28480 Brassica napus HOM05D000057 ORTHO05D003771 3.4e-09 65.1 74 44.6
BolC6t37293H Brassica oleracea HOM05D000057 ORTHO05D003771 3.4e-09 65.1 106 37.7
BraA07t29835Z Brassica rapa HOM05D000057 ORTHO05D003771 3.4e-09 65.1 106 36.8
HanXRQChr01g0027501 Helianthus annuus HOM05D000204 ORTHO05D003771 3.4e-09 65.1 77 45.5
Medtr7g101740 Medicago truncatula HOM05D000204 ORTHO05D003771 3.4e-09 65.1 105 41.9
BcaB02g07798 Brassica carinata HOM05D000204 ORTHO05D003771 4.4e-09 64.7 74 44.6
Lalb_Chr02g0156061 Lupinus albus HOM05D000204 ORTHO05D003771 4.4e-09 64.7 75 50.7
Aa31LG5G22290 Aethionema arabicum HOM05D000204 ORTHO05D003771 5.8e-09 64.3 110 36.4
MD01G1106100 Malus domestica HOM05D000057 ORTHO05D003771 5.8e-09 64.3 81 44.4
Aqoxy1G01201 Aquilegia oxysepala HOM05D000204 ORTHO05D003771 7.6e-09 63.9 73 47.9
DCAR_020828 Daucus carota HOM05D000204 ORTHO05D003771 7.6e-09 63.9 82 43.9
ECA248G1313 Erigeron canadensis HOM05D000204 ORTHO05D003771 7.6e-09 63.9 75 48.0
FvH4_6g16110 Fragaria vesca HOM05D000204 ORTHO05D003771 7.6e-09 63.9 88 44.3
FAN02G1080 Fragaria x ananassa HOM05D000204 ORTHO05D003771 7.6e-09 63.9 88 44.3
FAN14G3042 Fragaria x ananassa HOM05D000204 ORTHO05D003771 7.6e-09 63.9 88 44.3
FAN14G3398 Fragaria x ananassa HOM05D000204 ORTHO05D003771 7.6e-09 63.9 88 44.3
FAN14G4360 Fragaria x ananassa HOM05D000204 ORTHO05D003771 7.6e-09 63.9 88 44.3
Glyma.19G182600 Glycine max HOM05D000204 ORTHO05D003771 7.6e-09 63.9 74 48.6
VMungo0720G1045 Vigna mungo HOM05D000057 ORTHO05D003771 9.9e-09 63.5 77 45.5
CsaV3_6G036570 Cucumis sativus L. HOM05D000057 ORTHO05D003771 1.7e-08 62.8 84 39.3
MD04G1095800 Malus domestica HOM05D000204 ORTHO05D003771 1.7e-08 62.8 116 37.9
MD12G1115800 Malus domestica HOM05D000204 ORTHO05D003771 1.7e-08 62.8 86 41.9
PGSC0003DMG400031363 Solanum tuberosum HOM05D000057 ORTHO05D003771 1.7e-08 62.8 109 37.6
Lsat_1_v5_gn_1_53120 Lactuca sativa HOM05D000204 ORTHO05D003771 2.2e-08 62.4 79 45.6
Potri.006G126500 Populus trichocarpa HOM05D000204 ORTHO05D003771 2.2e-08 62.4 93 40.9
Atru.chr12.806 Acer truncatum HOM05D000204 ORTHO05D003771 2.9e-08 62.0 75 46.7
AT2G37030 Arabidopsis thaliana HOM05D000204 ORTHO05D003771 2.9e-08 62.0 101 40.6
Migut.J00527 Erythranthe guttata HOM05D000057 ORTHO05D003771 2.9e-08 62.0 89 38.2
Solyc10g086200.1 Solanum lycopersicum HOM05D000057 ORTHO05D003771 2.9e-08 62.0 109 37.6
MELO3C019811.2 Cucumis melo HOM05D000057 ORTHO05D003771 3.8e-08 61.6 99 39.4
HanXRQChr11g0350261 Helianthus annuus HOM05D000204 ORTHO05D003771 3.8e-08 61.6 78 46.2
ATR0048G025 Amborella trichopoda HOM05D000204 ORTHO05D003771 4.9e-08 61.2 68 51.5
A05p08810 Brassica napus HOM05D000204 ORTHO05D003771 4.9e-08 61.2 109 34.9
Sp4g19330 Schrenkiella parvula HOM05D000204 ORTHO05D003771 4.9e-08 61.2 110 37.3
CARHR131520 Cardamine hirsuta HOM05D000204 ORTHO05D003771 6.4e-08 60.8 110 36.4
Medtr1g094750 Medicago truncatula HOM05D000204 ORTHO05D003771 6.4e-08 60.8 96 41.7
BcaB02g09309 Brassica carinata HOM05D000204 ORTHO05D003771 8.4e-08 60.5 111 36.0
Carub.0004s1890 Capsella rubella HOM05D000204 ORTHO05D003771 8.4e-08 60.5 101 40.6
AL4G33350 Arabidopsis lyrata HOM05D000204 ORTHO05D003771 1.1e-07 60.1 101 39.6
BraA05t19848Z Brassica rapa HOM05D000204 ORTHO05D003771 1.1e-07 60.1 109 34.9
Glyma.20G180900 Glycine max HOM05D000204 ORTHO05D003771 1.1e-07 60.1 102 38.2
HanXRQChr14g0454541 Helianthus annuus HOM05D000204 ORTHO05D003771 1.1e-07 60.1 72 41.7
THA.LOC104806489 Tarenaya hassleriana HOM05D000204 ORTHO05D003771 1.1e-07 60.1 116 36.2
BcaC02g11828 Brassica carinata HOM05D000204 ORTHO05D003771 1.4e-07 59.7 109 34.9
Glyma.10G209700 Glycine max HOM05D000204 ORTHO05D003771 1.4e-07 59.7 69 47.8
Lsat_1_v5_gn_2_106561 Lactuca sativa HOM05D000204 ORTHO05D003771 1.4e-07 59.7 76 46.1
Lalb_Chr02g0142271 Lupinus albus HOM05D000204 ORTHO05D003771 1.4e-07 59.7 72 48.6
Thhalv10017913m.g Eutrema salsugineum HOM05D000204 ORTHO05D003771 1.9e-07 59.3 122 35.2
Manes.07G098100 Manihot esculenta HOM05D000204 ORTHO05D003771 1.9e-07 59.3 80 42.5
Os04g0517900 Oryza sativa ssp. japonica HOM05D000204 ORTHO05D003771 1.9e-07 59.3 79 40.5
BolC4t22686H Brassica oleracea HOM05D000204 ORTHO05D003771 2.4e-07 58.9 109 34.9
Zm00001eb077260 Zea mays HOM05D000204 ORTHO05D003771 2.4e-07 58.9 68 38.2
EL10Ac7g17925 Beta vulgaris HOM05D000057 ORTHO05D003771 4.2e-07 58.2 66 45.5
DCAR_020829 Daucus carota HOM05D000204 ORTHO05D003771 4.2e-07 58.2 66 47.0
PGR004G0754 Punica granatum HOM05D000204 ORTHO05D003771 4.2e-07 58.2 82 39.0
C04p10930 Brassica napus HOM05D000204 ORTHO05D003771 5.4e-07 57.8 109 33.9
Eucgr.A01140 Eucalyptus grandis HOM05D000204 ORTHO05D003771 5.4e-07 57.8 71 43.7
TPR.G23638 Trifolium pratense HOM05D000204 ORTHO05D003771 5.4e-07 57.8 96 38.5
BcaB01g03797 Brassica carinata HOM05D000204 ORTHO05D003771 7.1e-07 57.4 111 36.0
BcaB01g03799 Brassica carinata HOM05D000204 ORTHO05D003771 9.3e-07 57.0 111 36.0
HanXRQChr13g0399891 Helianthus annuus HOM05D000057 ORTHO05D003771 9.3e-07 57.0 66 47.0
SGA_v2.0_scaffold75G24854 Striga asiatica HOM05D000057 ORTHO05D003771 1.2e-06 56.6 92 37.0
Carub.0006s0212 Capsella rubella HOM05D000204 ORTHO05D003771 1.6e-06 56.2 103 38.8
CARHR210030 Cardamine hirsuta HOM05D000204 ORTHO05D003771 1.6e-06 56.2 80 43.8
ECA238G2736 Erigeron canadensis HOM05D000204 ORTHO05D003771 1.6e-06 56.2 76 44.7
MD07G1172500 Malus domestica HOM05D000204 ORTHO05D003771 1.6e-06 56.2 80 38.8
AT3G53250 Arabidopsis thaliana HOM05D000204 ORTHO05D003771 2.1e-06 55.8 116 34.5
Carub.0005s1979 Capsella rubella HOM05D000204 ORTHO05D003771 2.7e-06 55.5 102 38.2
Cpa.g.sc2443.1 Carica papaya HOM05D000204 ORTHO05D003771 2.7e-06 55.5 67 44.8
Lj5g0024285 Lotus japonicus HOM05D000204 ORTHO05D003771 2.7e-06 55.5 66 47.0
Aa31LG10G8460 Aethionema arabicum HOM05D000204 ORTHO05D003771 3.5e-06 55.1 108 36.1
CiPaw.01G271200 Carya illinoinensis HOM05D000057 ORTHO05D003771 3.5e-06 55.1 45 62.2
AUR62001144 Chenopodium quinoa HOM05D000204 ORTHO05D003771 3.5e-06 55.1 66 42.4
AUR62016533 Chenopodium quinoa HOM05D000204 ORTHO05D003771 3.5e-06 55.1 66 42.4
Thhalv10015803m.g Eutrema salsugineum HOM05D000204 ORTHO05D003771 3.5e-06 55.1 75 46.7
Ah.08g214740 Amaranthus hybridus HOM05D000204 ORTHO05D003771 4.6e-06 54.7 66 42.4
AL6G12630 Arabidopsis lyrata HOM05D000204 ORTHO05D003771 4.6e-06 54.7 75 45.3
Lalb_Chr03g0025241 Lupinus albus HOM05D000057 ORTHO05D000021 6.0e-06 54.3 49 53.1
BcaC02g07557 Brassica carinata HOM05D000204 ORTHO05D003771 7.8e-06 53.9 106 34.9
A04p28300 Brassica napus HOM05D000204 ORTHO05D003771 7.8e-06 53.9 106 34.9
GSVIVG01024130001 Vitis vinifera HOM05D000057 ORTHO05D000021 7.8e-06 53.9 51 49.0


User provided reference genes

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