Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.L02862 Eucalyptus grandis HOM05D000681 ORTHO05D194551 1.7e-54 215.7 104 100.0
Eucgr.B00896 Eucalyptus grandis HOM05D000681 ORTHO05D195126 7.8e-52 206.8 104 96.2
Eucgr.B00981 Eucalyptus grandis HOM05D000681 ORTHO05D193828 1.9e-50 202.2 104 95.2
Eucgr.B01879 Eucalyptus grandis HOM05D000681 ORTHO05D191187 3.5e-36 154.8 103 74.8
Eucgr.B01238 Eucalyptus grandis HOM05D000681 ORTHO05D193531 2.6e-31 138.7 91 75.8
Eucgr.B02970 Eucalyptus grandis HOM05D000681 ORTHO05D045318 3.4e-15 85.1 44 86.4
Eucgr.B01233 Eucalyptus grandis HOM05D000681 ORTHO05D045318 1.0e-14 83.6 44 84.1
COL.COLO4_10754 Corchorus olitorius HOM05D000681 ORTHO05D007906 1.4e-13 79.7 41 85.4
Manes.02G005700 Manihot esculenta HOM05D000681 ORTHO05D007906 1.9e-13 79.3 41 85.4
FAN08G3564 Fragaria x ananassa HOM05D000681 ORTHO05D007906 2.5e-13 79.0 40 85.0
FAN13G0722 Fragaria x ananassa HOM05D000681 ORTHO05D007906 2.5e-13 79.0 40 85.0
RcHm_v2.0_Chr7g0186321 Rosa chinensis HOM05D000681 ORTHO05D007906 2.5e-13 79.0 40 85.0
Prupe.5G126100 Prunus persica HOM05D000681 ORTHO05D007906 3.2e-13 78.6 41 80.5
Thecc.03G303300 Theobroma cacao HOM05D000681 ORTHO05D007906 3.2e-13 78.6 41 82.9
FvH4_5g11480 Fragaria vesca HOM05D000681 ORTHO05D007906 4.2e-13 78.2 40 82.5
FAN04G2935 Fragaria x ananassa HOM05D000681 ORTHO05D007906 4.2e-13 78.2 40 82.5
FAN18G3277 Fragaria x ananassa HOM05D000681 ORTHO05D007906 4.2e-13 78.2 40 82.5
FAN18G3879 Fragaria x ananassa HOM05D000681 ORTHO05D007906 4.2e-13 78.2 40 82.5
Glyma.13G002500 Glycine max HOM05D000681 ORTHO05D007906 4.2e-13 78.2 41 82.9
Sabra01G0063600 Salix brachista HOM05D000681 ORTHO05D007906 5.5e-13 77.8 41 82.9
CiPaw.11G115800 Carya illinoinensis HOM05D000681 ORTHO05D007906 7.2e-13 77.4 41 80.5
Glyma.20G066600 Glycine max HOM05D000681 ORTHO05D007906 7.2e-13 77.4 41 82.9
Lj6g0006526 Lotus japonicus HOM05D000681 ORTHO05D007906 9.4e-13 77.0 41 82.9
Gohir.A08G111500 Gossypium hirsutum HOM05D000681 ORTHO05D007906 1.2e-12 76.6 41 80.5
Gohir.D08G124500 Gossypium hirsutum HOM05D000681 ORTHO05D007906 1.2e-12 76.6 41 80.5
Gorai.004G131200 Gossypium raimondii HOM05D000681 ORTHO05D007906 1.2e-12 76.6 41 80.5
MD06G1113200 Malus domestica HOM05D000681 ORTHO05D007906 1.2e-12 76.6 41 78.0
MD14G1134300 Malus domestica HOM05D000681 ORTHO05D007906 1.2e-12 76.6 41 78.0
Potri.001G087300 Populus trichocarpa HOM05D000681 ORTHO05D007906 1.2e-12 76.6 41 82.9
Cfa011960 Carpinus fangiana HOM05D000681 ORTHO05D007906 1.6e-12 76.3 40 82.5
Duzib205G1886 Durio zibethinus HOM05D000681 ORTHO05D007906 1.6e-12 76.3 41 82.9
Eucgr.E01026 Eucalyptus grandis HOM05D000681 ORTHO05D007906 1.6e-12 76.3 41 80.5
GSVIVG01019609001 Vitis vinifera HOM05D000681 ORTHO05D007906 1.6e-12 76.3 41 80.5
Aa31LG2G1560 Aethionema arabicum HOM05D000681 ORTHO05D007906 2.1e-12 75.9 41 78.0
AL2G10220 Arabidopsis lyrata HOM05D000681 ORTHO05D007906 2.1e-12 75.9 41 78.0
AT1G64550 Arabidopsis thaliana HOM05D000681 ORTHO05D007906 2.1e-12 75.9 41 78.0
BcaB07g31474 Brassica carinata HOM05D000681 ORTHO05D007906 2.1e-12 75.9 41 78.0
A09p14590 Brassica napus HOM05D000681 ORTHO05D007906 2.1e-12 75.9 41 78.0
BraA09t37107Z Brassica rapa HOM05D000681 ORTHO05D007906 2.1e-12 75.9 41 78.0
Carub.0002s0020 Capsella rubella HOM05D000681 ORTHO05D007906 2.1e-12 75.9 41 78.0
CARHR046390 Cardamine hirsuta HOM05D000681 ORTHO05D007906 2.1e-12 75.9 41 78.0
Thhalv10023304m.g Eutrema salsugineum HOM05D000681 ORTHO05D007906 2.1e-12 75.9 41 78.0
Sp2g00200 Schrenkiella parvula HOM05D000681 ORTHO05D007906 2.1e-12 75.9 41 78.0
Hund11369 Selenicereus undatus HOM05D000681 ORTHO05D007906 2.1e-12 75.9 41 80.5
Peaxi162Scf00074g00436 Petunia axillaris HOM05D000681 ORTHO05D007906 2.7e-12 75.5 41 80.5
VMungo0540G0066 Vigna mungo HOM05D000681 ORTHO05D007906 2.7e-12 75.5 41 78.0
Phvul.006G000500 Phaseolus vulgaris HOM05D000681 ORTHO05D007906 3.6e-12 75.1 41 78.0
arahy.Tifrunner.gnm1.ann1.3Z5EIP Arachis hypogaea HOM05D000681 ORTHO05D007906 6.1e-12 74.3 40 80.0
arahy.Tifrunner.gnm1.ann1.7SWW0C Arachis hypogaea HOM05D000681 ORTHO05D007906 6.1e-12 74.3 40 80.0
arahy.Tifrunner.gnm1.ann1.NV1IU0 Arachis hypogaea HOM05D000681 ORTHO05D007906 6.1e-12 74.3 40 80.0
Dinv02365 Davidia involucrata HOM05D000681 ORTHO05D007906 6.1e-12 74.3 41 75.6
QL02p029270 Quercus lobata HOM05D000681 ORTHO05D007906 1.0e-11 73.6 40 77.5
PGR042G3327 Punica granatum HOM05D000681 ORTHO05D007906 1.4e-11 73.2 41 75.6
TWI60G0289 Tripterygium wilfordii HOM05D000681 ORTHO05D007906 1.4e-11 73.2 41 75.6
C09p17670 Brassica napus HOM05D000681 ORTHO05D007906 1.8e-11 72.8 41 75.6
BolC9t54661H Brassica oleracea HOM05D000681 ORTHO05D007906 1.8e-11 72.8 41 75.6
Ca_16302_v3 Cicer arietinum L. HOM05D000681 ORTHO05D007906 2.3e-11 72.4 41 73.2
ClCG01G001830 Citrullus lanatus HOM05D000681 ORTHO05D007906 2.3e-11 72.4 41 78.0
MELO3C005755.2 Cucumis melo HOM05D000681 ORTHO05D007906 2.3e-11 72.4 41 78.0
CsaV3_5G001980 Cucumis sativus L. HOM05D000681 ORTHO05D007906 2.3e-11 72.4 41 78.0
vmacro11525 Vaccinium macrocarpon HOM05D000681 ORTHO05D007906 2.3e-11 72.4 58 56.9
CAN.G567.63 Capsicum annuum HOM05D000681 ORTHO05D007906 3.0e-11 72.0 41 75.6
Cc08_g16470 Coffea canephora HOM05D000681 ORTHO05D007906 3.0e-11 72.0 41 75.6
Nn3g18935 Nelumbo nucifera HOM05D000681 ORTHO05D007906 3.0e-11 72.0 41 78.0
THA.LOC104823617 Tarenaya hassleriana HOM05D000681 ORTHO05D007906 3.0e-11 72.0 41 73.2
TPR.G22979 Trifolium pratense HOM05D000681 ORTHO05D007906 3.0e-11 72.0 41 73.2
Cpa.g.sc1802.2 Carica papaya HOM05D000681 ORTHO05D007906 3.9e-11 71.6 40 77.5
Ciclev10019068m.g Citrus clementina HOM05D000681 ORTHO05D007906 3.9e-11 71.6 40 75.0
Ciclev10033898m.g Citrus clementina HOM05D000681 ORTHO05D007906 3.9e-11 71.6 40 75.0
SEGI_25059 Sequoiadendron giganteum HOM05D000681 ORTHO05D007906 3.9e-11 71.6 41 73.2
CSS0003751 Camellia sinensis var. sinensis HOM05D000681 ORTHO05D007906 5.1e-11 71.2 40 77.5
CSS0011347 Camellia sinensis var. sinensis HOM05D000681 ORTHO05D007906 5.1e-11 71.2 40 77.5
SMO174G0206 Selaginella moellendorffii HOM05D000681 ORTHO05D007906 5.1e-11 71.2 39 74.4
CANSAT21G2350 Cannabis sativa HOM05D000681 ORTHO05D007906 6.7e-11 70.9 40 75.0
Medtr3g080970 Medicago truncatula HOM05D000681 ORTHO05D007906 6.7e-11 70.9 41 70.7
Sed0022208 Sechium edule HOM05D000681 ORTHO05D007906 6.7e-11 70.9 40 75.0
PGSC0003DMG400012253 Solanum tuberosum HOM05D000681 ORTHO05D007906 6.7e-11 70.9 40 75.0
TAR629G1351 Trochodendron aralioides HOM05D000681 ORTHO05D007906 6.7e-11 70.9 41 75.6
Atru.chr9.1961 Acer truncatum HOM05D000681 ORTHO05D007906 8.8e-11 70.5 40 75.0
Nitab4.5_0002367g0160 Nicotiana tabacum HOM05D000681 ORTHO05D007906 8.8e-11 70.5 40 75.0
Nitab4.5_0002439g0090 Nicotiana tabacum HOM05D000681 ORTHO05D007906 8.8e-11 70.5 40 75.0
Solyc08g082850.3 Solanum lycopersicum HOM05D000681 ORTHO05D007906 8.8e-11 70.5 40 75.0
Sopen08g031080 Solanum pennellii HOM05D000681 ORTHO05D007906 8.8e-11 70.5 40 75.0
unitig_748.g8249 Utricularia gibba HOM05D001832 ORTHO05D007906 8.8e-11 70.5 41 73.2
HPP92_025719 Vanilla planifolia HOM05D000681 ORTHO05D007906 8.8e-11 70.5 41 75.6
Psat5g108480 Pisum sativum HOM05D000681 ORTHO05D007906 1.1e-10 70.1 41 68.3
Actinidia22187 Actinidia chinensis HOM05D000681 ORTHO05D007906 1.5e-10 69.7 41 70.7
DCAR_029862 Daucus carota HOM05D000681 ORTHO05D007906 1.5e-10 69.7 40 72.5
SGA_v2.0_scaffold36G14288 Striga asiatica HOM05D000681 ORTHO05D007906 1.5e-10 69.7 41 70.7
Lsat_1_v5_gn_6_8920 Lactuca sativa HOM05D000681 ORTHO05D007906 2.0e-10 69.3 41 73.2
PSO135G0585 Papaver somniferum HOM05D000681 ORTHO05D007906 2.0e-10 69.3 41 73.2
PSO384G3259 Papaver somniferum HOM05D000681 ORTHO05D007906 2.0e-10 69.3 41 73.2
ATR0680G411 Amborella trichopoda HOM05D000681 ORTHO05D007906 4.3e-10 68.2 41 70.7
Lj2A160G61 Lonicera japonica HOM05D000681 ORTHO05D007906 4.3e-10 68.2 39 71.8
Rhsim02G0248800 Rhododendron simsii HOM05D000681 ORTHO05D007906 4.3e-10 68.2 41 68.3
Aqoxy7G00050 Aquilegia oxysepala HOM05D000681 ORTHO05D007906 5.7e-10 67.8 40 75.0
ECA233G2785 Erigeron canadensis HOM05D000681 ORTHO05D007906 5.7e-10 67.8 40 72.5
HanXRQChr07g0189311 Helianthus annuus HOM05D000681 ORTHO05D007906 5.7e-10 67.8 40 72.5
CDE06G2334 Ceratophyllum demersum HOM05D000681 ORTHO05D007906 7.4e-10 67.4 41 73.2
Mapoly0102s0020 Marchantia polymorpha HOM05D000681 ORTHO05D007906 7.4e-10 67.4 39 71.8
Lalb_Chr14g0362721 Lupinus albus HOM05D000681 ORTHO05D007906 9.7e-10 67.0 40 67.5
MBI18_g16983_MAGBIO Magnolia biondii HOM05D000681 ORTHO05D007906 9.7e-10 67.0 41 70.7
MSTRG.24855 Avicennia marina HOM05D000681 ORTHO05D007906 1.3e-09 66.6 41 68.3
Migut.C00616 Erythranthe guttata HOM05D000681 ORTHO05D007906 1.7e-09 66.2 40 67.5
Zm00001eb259290 Zea mays HOM05D000681 ORTHO05D007906 1.7e-09 66.2 39 69.2
EL10Ac5g12474 Beta vulgaris HOM05D000681 ORTHO05D007906 2.2e-09 65.9 41 70.7
AUR62007024 Chenopodium quinoa HOM05D000681 ORTHO05D007906 2.2e-09 65.9 41 70.7
AUR62019886 Chenopodium quinoa HOM05D000681 ORTHO05D007906 2.2e-09 65.9 41 70.7
Pp3c3_23080 Physcomitrium patens HOM05D000681 ORTHO05D007906 4.8e-09 64.7 39 69.2
SalBow6G2752 Salvia bowleyana HOM05D000681 ORTHO05D007906 1.1e-08 63.5 41 63.4
CBR_g19498 Chara braunii HOM05D000681 ORTHO05D007906 1.5e-07 59.7 38 63.2


User provided reference genes

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