Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.L02754 Eucalyptus grandis HOM05D006367 ORTHO05D007942 2.5e-203 711.8 346 100.0
Eucgr.I00312 Eucalyptus grandis HOM05D006367 ORTHO05D007942 3.8e-135 485.3 325 76.6
Ciclev10025312m.g Citrus clementina HOM05D006367 ORTHO05D007942 2.4e-113 412.9 323 62.5
Manes.12G144300 Manihot esculenta HOM05D006367 ORTHO05D007942 6.5e-111 404.8 317 63.1
Atru.chr7.1822 Acer truncatum HOM05D006367 ORTHO05D007942 2.5e-110 402.9 337 61.1
COL.COLO4_10985 Corchorus olitorius HOM05D006367 ORTHO05D007942 5.5e-110 401.7 301 65.8
Gohir.A02G136100 Gossypium hirsutum HOM05D006367 ORTHO05D007942 1.2e-109 400.6 303 63.7
Rhsim10G0148300 Rhododendron simsii HOM05D006367 ORTHO05D007942 2.1e-109 399.8 321 62.0
Gorai.003G048000 Gossypium raimondii HOM05D006367 ORTHO05D007942 2.7e-109 399.4 303 63.7
Potri.005G085800 Populus trichocarpa HOM05D006367 ORTHO05D007942 3.6e-109 399.1 300 64.0
TAR625G1249 Trochodendron aralioides HOM05D006367 ORTHO05D007942 6.1e-109 398.3 301 65.1
QL06p031689 Quercus lobata HOM05D006367 ORTHO05D007942 1.8e-108 396.7 304 63.5
Thecc.01G115500 Theobroma cacao HOM05D006367 ORTHO05D007942 5.2e-108 395.2 301 63.5
RcHm_v2.0_Chr2g0117461 Rosa chinensis HOM05D006367 ORTHO05D007942 8.8e-108 394.4 299 63.9
Sabra05G0070700 Salix brachista HOM05D006367 ORTHO05D007942 1.2e-107 394.0 300 64.7
FAN19G1918 Fragaria x ananassa HOM05D006367 ORTHO05D007942 3.3e-107 392.5 299 63.9
CiPaw.04G090000 Carya illinoinensis HOM05D006367 ORTHO05D007942 7.5e-107 391.3 316 61.7
RcHm_v2.0_Chr2g0117401 Rosa chinensis HOM05D006367 ORTHO05D007942 1.3e-106 390.6 299 63.9
FAN23G0352 Fragaria x ananassa HOM05D006367 ORTHO05D007942 1.7e-106 390.2 353 57.5
Nn5g28853 Nelumbo nucifera HOM05D006367 ORTHO05D007942 1.7e-106 390.2 300 62.7
Duzib187G0980 Durio zibethinus HOM05D006367 ORTHO05D007942 3.7e-106 389.0 301 63.1
Prupe.6G168900 Prunus persica HOM05D006367 ORTHO05D007942 3.7e-106 389.0 333 59.2
FAN26G2292 Fragaria x ananassa HOM05D006367 ORTHO05D007942 4.8e-106 388.7 349 58.2
MD10G1028700 Malus domestica HOM05D006367 ORTHO05D007942 1.1e-105 387.5 326 58.6
TWI75G1400 Tripterygium wilfordii HOM05D006367 ORTHO05D007942 7.0e-105 384.8 309 61.8
Gohir.D03G046900 Gossypium hirsutum HOM05D006367 ORTHO05D007942 2.0e-104 383.3 223 77.6
Haze_25063 Corylus avellana HOM05D006367 ORTHO05D007942 1.0e-103 380.9 317 61.8
Cc07_g16470 Coffea canephora HOM05D006367 ORTHO05D007942 1.7e-103 380.2 317 58.7
PGR004G1961 Punica granatum HOM05D006367 ORTHO05D007942 1.7e-103 380.2 346 59.5
CSS0012231 Camellia sinensis var. sinensis HOM05D006367 ORTHO05D007942 3.8e-103 379.0 227 76.7
FvH4_1g22940 Fragaria vesca HOM05D006367 ORTHO05D007942 3.8e-103 379.0 223 77.6
Aqoxy6G00434 Aquilegia oxysepala HOM05D006367 ORTHO05D007942 5.0e-103 378.6 305 60.7
RcHm_v2.0_Chr2g0117441 Rosa chinensis HOM05D006367 ORTHO05D007942 6.5e-103 378.3 223 78.0
Dinv42673 Davidia involucrata HOM05D006367 ORTHO05D007942 1.9e-102 376.7 223 77.1
VMungo0251G2542 Vigna mungo HOM05D006367 ORTHO05D007942 2.5e-102 376.3 317 58.4
Cfa002770 Carpinus fangiana HOM05D006367 ORTHO05D007942 7.2e-102 374.8 349 58.2
arahy.Tifrunner.gnm1.ann1.511U58 Arachis hypogaea HOM05D006367 ORTHO05D007942 1.6e-101 373.6 338 57.1
arahy.Tifrunner.gnm1.ann1.GSD986 Arachis hypogaea HOM05D006367 ORTHO05D007942 1.6e-101 373.6 301 60.5
CANSAT21G2601 Cannabis sativa HOM05D006367 ORTHO05D007942 1.6e-101 373.6 340 57.9
MBI04_g33338_MAGBIO Magnolia biondii HOM05D006367 ORTHO05D007942 1.6e-101 373.6 299 59.9
PSO675G5206 Papaver somniferum HOM05D006367 ORTHO05D007942 6.1e-101 371.7 314 58.6
HanXRQChr03g0078741 Helianthus annuus HOM05D006367 ORTHO05D007942 8.0e-101 371.3 314 60.5
Oeu028362.1 Olea europaea HOM05D006367 ORTHO05D007942 8.0e-101 371.3 351 56.4
SalBow6G4439 Salvia bowleyana HOM05D006367 ORTHO05D007942 1.4e-100 370.5 299 60.2
AUR62040525 Chenopodium quinoa HOM05D006367 ORTHO05D007942 2.3e-100 369.8 312 57.7
Cc04_g11230 Coffea canephora HOM05D006367 ORTHO05D007942 2.0e-99 366.7 336 55.1
Psat7g050440 Pisum sativum HOM05D006367 ORTHO05D007942 2.6e-99 366.3 305 58.4
AUR62039784 Chenopodium quinoa HOM05D006367 ORTHO05D007942 3.4e-99 365.9 312 57.1
Hund02300 Selenicereus undatus HOM05D006367 ORTHO05D007942 2.2e-98 363.2 298 59.4
MSTRG.23307 Avicennia marina HOM05D006367 ORTHO05D007942 4.8e-98 362.1 300 60.0
THA.LOC104807726 Tarenaya hassleriana HOM05D006367 ORTHO05D007942 8.3e-98 361.3 303 60.1
Thhalv10000126m.g Eutrema salsugineum HOM05D006367 ORTHO05D007942 1.8e-97 360.1 301 59.5
EL10Ac7g17324 Beta vulgaris HOM05D006367 ORTHO05D007942 3.1e-97 359.4 299 57.2
ECA240G4594 Erigeron canadensis HOM05D006367 ORTHO05D007942 5.4e-97 358.6 302 59.3
Carub.0004s0089 Capsella rubella HOM05D006367 ORTHO05D007942 1.6e-96 357.1 301 57.8
Ah.15g092040 Amaranthus hybridus HOM05D006367 ORTHO05D007942 2.7e-96 356.3 299 58.9
BcaC02g08760 Brassica carinata HOM05D006367 ORTHO05D007942 2.7e-96 356.3 299 58.2
C04p50960 Brassica napus HOM05D006367 ORTHO05D007942 2.7e-96 356.3 299 58.2
AT2G21860 Arabidopsis thaliana HOM05D006367 ORTHO05D007942 4.5e-96 355.5 301 57.1
Hma1.2p1_0696F.1_g204660 Hydrangea macrophylla HOM05D006367 ORTHO05D007942 5.9e-96 355.1 223 73.1
BcaB06g27790 Brassica carinata HOM05D006367 ORTHO05D007942 7.7e-96 354.8 306 57.2
MELO3C034581.2 Cucumis melo HOM05D006367 ORTHO05D007942 7.7e-96 354.8 342 54.7
Sopen04g022980 Solanum pennellii HOM05D006367 ORTHO05D007942 1.3e-95 354.0 299 59.2
CARHR112860 Cardamine hirsuta HOM05D006367 ORTHO05D007942 1.7e-95 353.6 301 57.5
Nitab4.5_0009050g0050 Nicotiana tabacum HOM05D006367 ORTHO05D007942 2.9e-95 352.8 299 58.5
Sp4g00950 Schrenkiella parvula HOM05D006367 ORTHO05D007942 2.9e-95 352.8 301 58.8
Sed0027379 Sechium edule HOM05D006367 ORTHO05D007942 2.9e-95 352.8 224 72.8
Sc14g0009250 Simmondsia chinensis HOM05D006367 ORTHO05D007942 3.8e-95 352.4 343 56.0
Solyc04g051610.3 Solanum lycopersicum HOM05D006367 ORTHO05D007942 2.5e-94 349.7 299 58.9
A04p16450 Brassica napus HOM05D006367 ORTHO05D007942 4.2e-94 349.0 299 57.2
BraA04t17280Z Brassica rapa HOM05D006367 ORTHO05D007942 4.2e-94 349.0 299 57.2
Nitab4.5_0000184g0160 Nicotiana tabacum HOM05D006367 ORTHO05D007942 4.2e-94 349.0 312 56.1
AL4G11170 Arabidopsis lyrata HOM05D006367 ORTHO05D007942 7.2e-94 348.2 301 56.8
SGA_v2.0_scaffold2G01287 Striga asiatica HOM05D006367 ORTHO05D007942 9.5e-94 347.8 305 58.4
ClCG02G000950 Citrullus lanatus HOM05D006367 ORTHO05D007942 2.1e-93 346.7 340 54.4
CDE06G2209 Ceratophyllum demersum HOM05D006367 ORTHO05D007942 8.0e-93 344.7 223 70.9
Glyma.05G184900 Glycine max HOM05D006367 ORTHO05D007942 8.0e-93 344.7 332 53.6
Aa31LG7G14760 Aethionema arabicum HOM05D006367 ORTHO05D007942 5.2e-92 342.0 311 55.9
Os01g0716400 Oryza sativa ssp. japonica HOM05D006367 ORTHO05D007942 6.8e-92 341.7 295 56.9
CAN.G1044.2 Capsicum annuum HOM05D006367 ORTHO05D007942 8.9e-92 341.3 277 61.4
Lsat_1_v5_gn_5_44981 Lactuca sativa HOM05D006367 ORTHO05D007942 1.5e-91 340.5 300 58.0
CARHR112850 Cardamine hirsuta HOM05D006367 ORTHO05D007942 2.6e-91 339.7 336 53.6
Zm00001eb361490 Zea mays HOM05D006367 ORTHO05D007942 2.6e-91 339.7 323 54.2
Ca_17687_v3 Cicer arietinum L. HOM05D006367 ORTHO05D007942 1.7e-90 337.0 327 52.6
CsaV3_2G017740 Cucumis sativus L. HOM05D006367 ORTHO05D007942 3.7e-90 335.9 330 53.0
Phvul.002G265800 Phaseolus vulgaris HOM05D006367 ORTHO05D007942 3.7e-90 335.9 317 53.3
MELO3C020965.2 Cucumis melo HOM05D006367 ORTHO05D007942 1.4e-89 334.0 342 52.3
Lj4g0025161 Lotus japonicus HOM05D006367 ORTHO05D007942 1.4e-89 334.0 317 52.4
Migut.H02447 Erythranthe guttata HOM05D006367 ORTHO05D007942 5.4e-89 332.0 303 56.1
TPR.G2178 Trifolium pratense HOM05D006367 ORTHO05D007942 7.0e-89 331.6 307 53.4
Medtr8g092050 Medicago truncatula HOM05D006367 ORTHO05D007942 1.6e-88 330.5 335 51.6
CDE04G0187 Ceratophyllum demersum HOM05D006367 ORTHO05D007942 2.7e-88 329.7 331 51.1
Lj4P863T60 Lonicera japonica HOM05D006367 ORTHO05D007942 4.5e-88 328.9 244 65.2
Lalb_Chr07g0184731 Lupinus albus HOM05D006367 ORTHO05D007942 2.3e-87 326.6 327 53.2
PGSC0003DMG400023291 Solanum tuberosum HOM05D006367 ORTHO05D007942 1.4e-84 317.4 288 56.6
DCAR_011462 Daucus carota HOM05D006367 ORTHO05D007942 1.5e-83 313.9 300 54.0
ATR1120G154 Amborella trichopoda HOM05D006367 ORTHO05D007942 2.2e-82 310.1 341 47.2
Actinidia05379 Actinidia chinensis HOM05D006367 ORTHO05D007942 5.4e-81 305.4 227 65.2
unitig_899.g14612 Utricularia gibba HOM05D006367 ORTHO05D007942 1.6e-69 267.3 182 68.7
SMO367G0721 Selaginella moellendorffii HOM05D006367 ORTHO05D007942 7.1e-65 251.9 298 44.0
Pp3c8_810 Physcomitrium patens HOM05D006367 ORTHO05D007942 1.7e-63 247.3 342 39.5
AagrBONN_evm.TU.Sc2ySwM_344.2769 Anthoceros agrestis HOM05D006367 ORTHO05D007942 3.3e-62 243.0 293 43.3
Peaxi162Scf00106g01216 Petunia axillaris HOM05D006367 ORTHO05D007942 4.0e-60 236.1 224 55.8
Nitab4.5_0005102g0010 Nicotiana tabacum HOM05D006367 ORTHO05D007942 1.2e-59 234.6 222 53.6
CBR_g8843 Chara braunii HOM05D006367 ORTHO05D007942 3.2e-57 226.5 184 55.4
Hma1.2p1_0696F.1_g204650 Hydrangea macrophylla HOM05D006367 ORTHO05D007942 6.6e-47 192.2 203 50.7
Glyma.08G142900 Glycine max HOM05D006367 ORTHO05D007942 1.1e-46 191.4 246 44.7
HPP92_027992 Vanilla planifolia HOM05D006367 ORTHO05D007942 1.4e-44 184.5 227 44.5
PGSC0003DMG400020963 Solanum tuberosum HOM05D006367 ORTHO05D007942 2.3e-39 167.2 222 41.4
AagrBONN_evm.TU.Sc2ySwM_344.1355 Anthoceros agrestis HOM05D006367 ORTHO05D007942 3.9e-39 166.4 265 33.2
Cre09.g388060 Chlamydomonas reinhardtii HOM05D006367 ORTHO05D007942 4.3e-38 162.9 181 45.9
MCO11G553 Micromonas commoda HOM05D006367 ORTHO05D007942 5.8e-27 125.9 174 35.6
PRCOL_00006729 Prasinoderma coloniale HOM05D006367 ORTHO05D007942 2.7e-24 117.1 174 36.2
PGSC0003DMG400004546 Solanum tuberosum HOM05D006367 ORTHO05D007942 1.5e-14 84.7 43 83.7
Haze_24492 Corylus avellana HOM05D001078 ORTHO05D000927 9.7e-14 82.0 53 79.2
GSVIVG01022252001 Vitis vinifera HOM05D006367 ORTHO05D007942 2.6e-11 73.9 118 39.8
CARHR293120 Cardamine hirsuta HOM05D006367 ORTHO05D007942 3.4e-11 73.6 91 42.9
PGSC0003DMG400031203 Solanum tuberosum HOM05D006367 ORTHO05D007942 4.5e-11 73.2 39 76.9
Psat3g005000 Pisum sativum HOM05D006573 ORTHO05D008073 3.9e-07 60.1 121 24.0
Ca_09476_v3 Cicer arietinum L. HOM05D006573 ORTHO05D008073 6.7e-07 59.3 121 24.0
Medtr7g116630 Medicago truncatula HOM05D006573 ORTHO05D008073 6.7e-07 59.3 121 24.0
TPR.G4727 Trifolium pratense HOM05D006573 ORTHO05D008073 6.7e-07 59.3 121 24.0
arahy.Tifrunner.gnm1.ann1.ZGZX3T Arachis hypogaea HOM05D006573 ORTHO05D008073 8.8e-07 58.9 121 24.0
Glyma.03G253500 Glycine max HOM05D006573 ORTHO05D008073 1.1e-06 58.5 146 24.0
Glyma.19G251000 Glycine max HOM05D006573 ORTHO05D008073 1.5e-06 58.2 145 23.4
VMungo0540G0667 Vigna mungo HOM05D006573 ORTHO05D008073 2.6e-06 57.4 121 24.0
Phvul.006G108200 Phaseolus vulgaris HOM05D006573 ORTHO05D008073 4.4e-06 56.6 121 23.1
Zm00001eb085840 Zea mays HOM05D006573 ORTHO05D008073 4.4e-06 56.6 121 21.5
arahy.Tifrunner.gnm1.ann1.L0KK3Q Arachis hypogaea HOM05D006573 ORTHO05D008073 7.4e-06 55.8 121 23.1


User provided reference genes

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