Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.L02747 Eucalyptus grandis HOM05D005592 ORTHO05D006067 1.1e-209 733.0 362 100.0
Eucgr.H00237 Eucalyptus grandis HOM05D005592 ORTHO05D006067 1.6e-181 639.4 359 89.4
Eucgr.E00005 Eucalyptus grandis HOM05D005592 ORTHO05D006067 2.1e-107 393.3 267 78.7
PGR083G1109 Punica granatum HOM05D005592 ORTHO05D006067 8.6e-98 361.3 386 50.0
Cfa001174 Carpinus fangiana HOM05D005592 ORTHO05D006067 1.1e-97 360.9 375 50.4
CiPaw.01G308100 Carya illinoinensis HOM05D005592 ORTHO05D006067 1.1e-95 354.4 375 48.8
TWI75G0267 Tripterygium wilfordii HOM05D005592 ORTHO05D006067 2.6e-94 349.7 375 50.4
MD07G1239100 Malus domestica HOM05D005592 ORTHO05D006067 7.6e-94 348.2 382 48.4
GSVIVG01032876001 Vitis vinifera HOM05D005592 ORTHO05D006067 9.9e-94 347.8 364 50.3
Thecc.10G188900 Theobroma cacao HOM05D005592 ORTHO05D006067 3.2e-92 342.8 378 49.2
COL.COLO4_19504 Corchorus olitorius HOM05D005592 ORTHO05D006067 7.1e-92 341.7 361 50.1
Potri.016G144200 Populus trichocarpa HOM05D005592 ORTHO05D006067 9.3e-92 341.3 374 50.0
CANSAT56G3301 Cannabis sativa HOM05D005592 ORTHO05D006067 4.6e-91 339.0 372 48.1
RcHm_v2.0_Chr1g0372931 Rosa chinensis HOM05D005592 ORTHO05D006067 1.0e-90 337.8 359 49.9
Hma1.2p1_0264F.1_g105710 Hydrangea macrophylla HOM05D005592 ORTHO05D006067 3.9e-90 335.9 358 48.6
Actinidia13627 Actinidia chinensis HOM05D005592 ORTHO05D006067 5.1e-90 335.5 376 48.9
Lj1C971G13 Lonicera japonica HOM05D005592 ORTHO05D006067 1.1e-89 334.3 377 46.9
Gohir.A13G008900 Gossypium hirsutum HOM05D005592 ORTHO05D006067 2.8e-88 329.7 349 50.1
Gorai.013G010300 Gossypium raimondii HOM05D005592 ORTHO05D006067 6.2e-88 328.6 349 49.6
FAN01G0671 Fragaria x ananassa HOM05D005592 ORTHO05D006067 1.4e-87 327.4 375 46.9
Gohir.D13G009600 Gossypium hirsutum HOM05D005592 ORTHO05D006067 1.4e-87 327.4 347 49.6
Duzib066G0005 Durio zibethinus HOM05D005592 ORTHO05D006067 4.0e-87 325.9 364 49.5
Ciclev10030128m.g Citrus clementina HOM05D005592 ORTHO05D006067 9.0e-87 324.7 375 47.5
Hma1.2p1_0264F.1_g105700 Hydrangea macrophylla HOM05D005592 ORTHO05D006067 1.5e-86 323.9 358 47.8
FAN03G0809 Fragaria x ananassa HOM05D005592 ORTHO05D006067 2.6e-86 323.2 375 46.4
CsaV3_1G032540 Cucumis sativus L. HOM05D005592 ORTHO05D006067 4.9e-85 318.9 375 45.9
FvH4_7g26380 Fragaria vesca HOM05D005592 ORTHO05D006067 1.1e-84 317.8 375 45.9
ClCG03G006970 Citrullus lanatus HOM05D005592 ORTHO05D006067 1.4e-84 317.4 375 45.3
MELO3C002725.2 Cucumis melo HOM05D005592 ORTHO05D006067 1.4e-84 317.4 375 45.6
Atru.chr12.227 Acer truncatum HOM05D005592 ORTHO05D006067 4.2e-84 315.8 358 46.1
Manes.18G121600 Manihot esculenta HOM05D005592 ORTHO05D006067 5.4e-84 315.5 375 46.1
TAR369G0313 Trochodendron aralioides HOM05D005592 ORTHO05D006067 7.1e-84 315.1 365 46.0
THA.LOC104813079 Tarenaya hassleriana HOM05D005592 ORTHO05D006067 1.2e-83 314.3 371 43.4
Sed0013074 Sechium edule HOM05D005592 ORTHO05D006067 2.7e-83 313.2 372 44.6
Nn5g26734 Nelumbo nucifera HOM05D005592 ORTHO05D006067 5.1e-82 308.9 362 45.6
Medtr3g093440 Medicago truncatula HOM05D005592 ORTHO05D006067 1.9e-81 307.0 359 44.3
Aqoxy2G00637 Aquilegia oxysepala HOM05D005592 ORTHO05D006067 2.5e-81 306.6 349 46.1
TPR.G13972 Trifolium pratense HOM05D005592 ORTHO05D006067 7.4e-81 305.1 359 43.7
Migut.F00557 Erythranthe guttata HOM05D005592 ORTHO05D006067 9.6e-81 304.7 374 45.5
SalBow3G4308 Salvia bowleyana HOM05D005592 ORTHO05D006067 6.2e-80 302.0 375 43.7
SHI08066 Sapria himalayana HOM05D005592 ORTHO05D006067 1.4e-79 300.8 360 45.3
Ah.10g029720 Amaranthus hybridus HOM05D005592 ORTHO05D006067 1.8e-79 300.4 368 46.7
BcaC05g27807 Brassica carinata HOM05D005592 ORTHO05D006067 2.4e-79 300.1 358 44.1
C05p38090 Brassica napus HOM05D005592 ORTHO05D006067 2.4e-79 300.1 358 44.1
BolC5t32537H Brassica oleracea HOM05D005592 ORTHO05D006067 2.4e-79 300.1 358 44.1
BcaB03g13702 Brassica carinata HOM05D005592 ORTHO05D006067 3.1e-79 299.7 377 43.2
Glyma.04G225100 Glycine max HOM05D005592 ORTHO05D006067 3.1e-79 299.7 359 44.3
Lalb_Chr23g0272061 Lupinus albus HOM05D005592 ORTHO05D006067 6.9e-79 298.5 359 44.6
Thhalv10006832m.g Eutrema salsugineum HOM05D005592 ORTHO05D006067 7.6e-78 295.0 377 43.0
Glyma.06G139600 Glycine max HOM05D005592 ORTHO05D006067 2.2e-77 293.5 358 43.6
A05p24340 Brassica napus HOM05D005592 ORTHO05D006067 2.9e-77 293.1 358 43.9
BraA05t21327Z Brassica rapa HOM05D005592 ORTHO05D006067 2.9e-77 293.1 358 43.9
EL10Ac2g02700 Beta vulgaris HOM05D005592 ORTHO05D006067 3.8e-77 292.7 367 43.6
Sabra04G0160100 Salix brachista HOM05D005592 ORTHO05D006067 6.4e-77 292.0 366 47.0
Sopen03g025240 Solanum pennellii HOM05D005592 ORTHO05D006067 1.1e-76 291.2 370 43.0
Aa31LG6G7910 Aethionema arabicum HOM05D005592 ORTHO05D006067 1.4e-76 290.8 359 41.5
Cc02_g04980 Coffea canephora HOM05D005592 ORTHO05D006067 1.4e-76 290.8 358 42.2
Lj1g0017160 Lotus japonicus HOM05D005592 ORTHO05D006067 3.2e-76 289.7 367 43.3
Peaxi162Scf00073g02027 Petunia axillaris HOM05D005592 ORTHO05D006067 7.1e-76 288.5 371 42.0
Prupe.2G267900 Prunus persica HOM05D005592 ORTHO05D006067 7.1e-76 288.5 317 48.6
arahy.Tifrunner.gnm1.ann1.IE8JUR Arachis hypogaea HOM05D005592 ORTHO05D006067 9.3e-76 288.1 358 43.6
Psat5g070400 Pisum sativum HOM05D005592 ORTHO05D006067 9.3e-76 288.1 353 42.5
Hund15772 Selenicereus undatus HOM05D005592 ORTHO05D006067 2.1e-75 287.0 378 42.9
arahy.Tifrunner.gnm1.ann1.8FW391 Arachis hypogaea HOM05D005592 ORTHO05D006067 3.5e-75 286.2 358 43.3
Ca_16843_v3 Cicer arietinum L. HOM05D005592 ORTHO05D006067 4.6e-75 285.8 365 41.9
Dinv21875 Davidia involucrata HOM05D005592 ORTHO05D006067 4.6e-75 285.8 368 44.0
Sp1g28850 Schrenkiella parvula HOM05D005592 ORTHO05D006067 4.6e-75 285.8 358 42.7
AT1G33400 Arabidopsis thaliana HOM05D005592 ORTHO05D006067 6.0e-75 285.4 358 41.3
HanXRQChr09g0252351 Helianthus annuus HOM05D005592 ORTHO05D006067 1.0e-74 284.6 357 43.1
DCAR_018065 Daucus carota HOM05D005592 ORTHO05D006067 3.9e-74 282.7 325 47.4
AL1G47780 Arabidopsis lyrata HOM05D005592 ORTHO05D006067 5.1e-74 282.3 358 42.2
ATR1126G052 Amborella trichopoda HOM05D005592 ORTHO05D006067 1.9e-73 280.4 338 45.9
Carub.0001s3159 Capsella rubella HOM05D005592 ORTHO05D006067 3.7e-72 276.2 358 41.6
PSO339G4695 Papaver somniferum HOM05D005592 ORTHO05D006067 6.2e-72 275.4 376 41.0
Sc10g0003140 Simmondsia chinensis HOM05D005592 ORTHO05D006067 1.4e-71 274.2 360 43.1
Rhsim03G0155100 Rhododendron simsii HOM05D005592 ORTHO05D006067 2.4e-71 273.5 434 36.6
Lsat_1_v5_gn_9_60521 Lactuca sativa HOM05D005592 ORTHO05D006067 1.5e-70 270.8 353 43.6
Nitab4.5_0001130g0030 Nicotiana tabacum HOM05D005592 ORTHO05D006067 2.1e-67 260.4 373 37.8
FAN06G1899 Fragaria x ananassa HOM05D005592 ORTHO05D006067 4.6e-67 259.2 302 46.7
HPP92_022562 Vanilla planifolia HOM05D005592 ORTHO05D006067 4.3e-65 252.7 349 41.8
ECA232G3941 Erigeron canadensis HOM05D005592 ORTHO05D006067 7.4e-65 251.9 378 38.9
Os10g0506800 Oryza sativa ssp. japonica HOM05D005592 ORTHO05D006067 3.4e-62 243.0 343 39.9
AUR62032559 Chenopodium quinoa HOM05D005592 ORTHO05D006067 2.5e-60 236.9 341 41.1
Oeu008098.1 Olea europaea HOM05D005592 ORTHO05D006067 2.5e-60 236.9 321 42.7
unitig_37.g12479 Utricularia gibba HOM05D005592 ORTHO05D006067 1.2e-59 234.6 364 38.5
Nitab4.5_0000103g0070 Nicotiana tabacum HOM05D005592 ORTHO05D006067 1.6e-59 234.2 353 38.5
Zm00001eb044040 Zea mays HOM05D005592 ORTHO05D006067 1.7e-56 224.2 344 39.0
Phvul.009G040900 Phaseolus vulgaris HOM05D005592 ORTHO05D006067 1.8e-55 220.7 355 38.6
Haze_17388 Corylus avellana HOM05D005592 ORTHO05D006067 1.7e-53 214.2 168 59.5
VMungo1309G2057 Vigna mungo HOM05D005592 ORTHO05D006067 3.9e-50 203.0 309 38.2
Mapoly0086s0022 Marchantia polymorpha HOM05D005592 ORTHO05D006067 5.5e-44 182.6 368 32.9
CAN.G1151.3 Capsicum annuum HOM05D005592 ORTHO05D006067 7.0e-39 165.6 168 47.0
vmacro06869 Vaccinium macrocarpon HOM05D005592 ORTHO05D006067 5.9e-38 162.5 176 47.2
AUR62031675 Chenopodium quinoa HOM05D005592 ORTHO05D006067 2.9e-37 160.2 355 30.7
Pp3c22_7900 Physcomitrium patens HOM05D005592 ORTHO05D006067 2.5e-36 157.1 337 31.5
SMO165G0048 Selaginella moellendorffii HOM05D005592 ORTHO05D006067 2.5e-36 157.1 332 31.3
CARHR032840 Cardamine hirsuta HOM05D005592 ORTHO05D006067 5.2e-34 149.4 248 36.7
Cpa.g.sc41.43 Carica papaya HOM05D005592 ORTHO05D006067 8.8e-34 148.7 117 55.6
SGA_v2.0_scaffold60G20866 Striga asiatica HOM05D005592 ORTHO05D006067 3.2e-28 130.2 213 38.0
MBI17_g23520_MAGBIO Magnolia biondii HOM05D005592 ORTHO05D006067 5.7e-25 119.4 222 32.9
SMO139G0018 Selaginella moellendorffii HOM05D005592 ORTHO05D006067 1.7e-24 117.9 303 30.0
vmacro06868 Vaccinium macrocarpon HOM05D005592 ORTHO05D006067 3.7e-24 116.7 138 44.2
SEGI_10878 Sequoiadendron giganteum HOM05D001800 ORTHO05D000007 3.5e-22 110.2 104 48.1
AagrBONN_evm.TU.Sc2ySwM_344.3534 Anthoceros agrestis HOM05D005592 ORTHO05D006067 4.5e-22 109.8 165 36.4
Actinidia27253 Actinidia chinensis HOM05D005592 ORTHO05D006067 1.3e-21 108.2 212 34.9
CARHR032830 Cardamine hirsuta HOM05D005592 ORTHO05D006067 1.3e-21 108.2 101 48.5
VMungo1309G2865 Vigna mungo HOM05D005592 ORTHO05D006067 3.1e-15 87.0 65 55.4
Actinidia27252 Actinidia chinensis HOM05D005592 ORTHO05D006067 1.7e-13 81.3 105 41.0
SEGI_39178 Sequoiadendron giganteum HOM05D005592 ORTHO05D006067 2.9e-13 80.5 170 30.6
Hma1.2p1_0053F.1_g030850 Hydrangea macrophylla HOM05D003724 ORTHO05D004367 1.5e-12 78.2 53 67.9
Cpa.g.sc41.44 Carica papaya HOM05D005592 ORTHO05D006067 3.3e-12 77.0 162 34.0
AagrBONN_evm.TU.Sc2ySwM_344.3533 Anthoceros agrestis HOM05D005592 ORTHO05D006067 3.4e-09 67.0 144 30.6
CDE04G2082 Ceratophyllum demersum HOM05D005592 ORTHO05D006067 7.5e-09 65.9 92 40.2
VMungo1309G2182 Vigna mungo HOM05D004492 ORTHO05D005602 7.5e-09 65.9 129 34.1
ATR0684G004 Amborella trichopoda HOM05D004492 ORTHO05D005602 3.7e-08 63.5 115 33.9
Phvul.009G121500 Phaseolus vulgaris HOM05D004492 ORTHO05D005602 4.9e-08 63.2 129 33.3
RcHm_v2.0_Chr6g0294881 Rosa chinensis HOM05D004492 ORTHO05D005602 6.4e-08 62.8 133 29.3
Thecc.08G119300 Theobroma cacao HOM05D004492 ORTHO05D005602 6.4e-08 62.8 153 30.7
CDE11G0913 Ceratophyllum demersum HOM05D004492 ORTHO05D005602 1.1e-07 62.0 108 34.3
Lalb_Chr08g0241631 Lupinus albus HOM05D004492 ORTHO05D005602 1.1e-07 62.0 132 32.6
ClCG03G009360 Citrullus lanatus HOM05D004492 ORTHO05D005602 1.4e-07 61.6 126 31.0
Lj1g0007587 Lotus japonicus HOM05D004492 ORTHO05D005602 1.4e-07 61.6 129 32.6
Cpa.g.sc36.10 Carica papaya HOM05D004492 ORTHO05D005602 1.9e-07 61.2 127 33.9
Ca_15216_v3 Cicer arietinum L. HOM05D004492 ORTHO05D005602 1.9e-07 61.2 130 33.1
Thecc.08G119000 Theobroma cacao HOM05D004492 ORTHO05D005602 2.4e-07 60.8 138 32.6
CsaV3_5G023260 Cucumis sativus L. HOM05D004492 ORTHO05D005602 3.2e-07 60.5 126 31.0
QL09p035929 Quercus lobata HOM05D004492 ORTHO05D005602 3.2e-07 60.5 129 32.6
Ah.05g172340 Amaranthus hybridus HOM05D004492 ORTHO05D005602 5.4e-07 59.7 154 27.9
Eucgr.G00611 Eucalyptus grandis HOM05D004492 ORTHO05D005602 5.4e-07 59.7 123 32.5
Sed0009263 Sechium edule HOM05D004492 ORTHO05D005602 5.4e-07 59.7 126 31.0
Mapoly0101s0047 Marchantia polymorpha HOM05D004492 ORTHO05D005602 7.0e-07 59.3 124 30.6
Oeu047923.1 Olea europaea HOM05D004492 ORTHO05D005602 7.0e-07 59.3 129 31.8
CAN.G1396.8 Capsicum annuum HOM05D004492 ORTHO05D005602 9.2e-07 58.9 135 31.1
Medtr3g073000 Medicago truncatula HOM05D004492 ORTHO05D005602 9.2e-07 58.9 130 30.8
Psat5g133640 Pisum sativum HOM05D004492 ORTHO05D005602 9.2e-07 58.9 130 31.5
DCAR_002659 Daucus carota HOM05D004492 ORTHO05D005602 1.2e-06 58.5 126 33.3
MELO3C003048.2 Cucumis melo HOM05D004492 ORTHO05D005602 1.6e-06 58.2 126 29.4
Glyma.04G252800 Glycine max HOM05D004492 ORTHO05D005602 1.6e-06 58.2 127 32.3
Aqoxy5G02431 Aquilegia oxysepala HOM05D004492 ORTHO05D005602 2.0e-06 57.8 106 33.0
Peaxi162Scf00051g00731 Petunia axillaris HOM05D004492 ORTHO05D005602 2.0e-06 57.8 174 28.7
PGR042G0918 Punica granatum HOM05D004492 ORTHO05D005602 2.0e-06 57.8 110 30.9
Sc23g0000850 Simmondsia chinensis HOM05D004492 ORTHO05D005602 2.0e-06 57.8 154 27.9
Thecc.08G119200 Theobroma cacao HOM05D004492 ORTHO05D005602 2.0e-06 57.8 135 31.9
Ciclev10001105m.g Citrus clementina HOM05D004492 ORTHO05D005602 2.7e-06 57.4 132 31.8
HanXRQChr05g0149221 Helianthus annuus HOM05D004492 ORTHO05D005602 2.7e-06 57.4 123 29.3
MD15G1356600 Malus domestica HOM05D004492 ORTHO05D005602 2.7e-06 57.4 127 31.5
TPR.G22341 Trifolium pratense HOM05D004492 ORTHO05D005602 2.7e-06 57.4 133 30.8
CiPaw.06G026300 Carya illinoinensis HOM05D004492 ORTHO05D005602 4.6e-06 56.6 129 31.0
Haze_00500 Corylus avellana HOM05D004492 ORTHO05D005602 4.6e-06 56.6 129 31.8
Rhsim11G0066100 Rhododendron simsii HOM05D004492 ORTHO05D005602 4.6e-06 56.6 120 30.0
HPP92_009359 Vanilla planifolia HOM05D004492 ORTHO05D005602 4.6e-06 56.6 127 32.3
Lsat_1_v5_gn_6_109160 Lactuca sativa HOM05D004492 ORTHO05D005602 6.0e-06 56.2 137 29.2
Migut.C01175 Erythranthe guttata HOM05D004492 ORTHO05D005602 7.8e-06 55.8 148 29.1
Thecc.08G118900 Theobroma cacao HOM05D004492 ORTHO05D005602 7.8e-06 55.8 275 23.3


User provided reference genes

Program Settings