Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.L02719 Eucalyptus grandis HOM05D006323 ORTHO05D007827 6.5e-116 420.6 196 100.0
Eucgr.F00088 Eucalyptus grandis HOM05D006323 ORTHO05D007827 3.4e-80 302.0 151 92.7
Cfa013771 Carpinus fangiana HOM05D006323 ORTHO05D007827 1.5e-51 206.8 151 65.6
Haze_22429 Corylus avellana HOM05D006323 ORTHO05D007827 2.5e-51 206.1 151 64.9
CSS0010458 Camellia sinensis var. sinensis HOM05D006323 ORTHO05D007827 8.4e-47 191.0 150 61.3
CSS0050369 Camellia sinensis var. sinensis HOM05D006323 ORTHO05D007827 1.4e-46 190.3 150 61.3
Hma1.2p1_0819F.1_g223630 Hydrangea macrophylla HOM05D006323 ORTHO05D007827 1.4e-46 190.3 151 62.3
Lj4A71T64 Lonicera japonica HOM05D006323 ORTHO05D007827 1.4e-46 190.3 151 61.6
CSS0045238 Camellia sinensis var. sinensis HOM05D006323 ORTHO05D007827 3.2e-46 189.1 150 60.0
CSS0024022 Camellia sinensis var. sinensis HOM05D006323 ORTHO05D007827 4.2e-46 188.7 150 60.0
Nn5g30609 Nelumbo nucifera HOM05D006323 ORTHO05D007827 7.1e-46 188.0 150 60.7
Eucgr.C01112 Eucalyptus grandis HOM05D006323 ORTHO05D007827 1.2e-45 187.2 92 93.5
vmacro22049 Vaccinium macrocarpon HOM05D006323 ORTHO05D007827 2.1e-45 186.4 150 58.7
CiPaw.07G174200 Carya illinoinensis HOM05D006323 ORTHO05D007827 3.5e-45 185.7 150 60.7
QL12p038177 Quercus lobata HOM05D006323 ORTHO05D007827 6.0e-45 184.9 150 60.0
Actinidia38108 Actinidia chinensis HOM05D006323 ORTHO05D007827 3.9e-44 182.2 149 61.1
Ca_13213_v3 Cicer arietinum L. HOM05D006323 ORTHO05D007827 5.1e-44 181.8 164 54.3
Dinv44950 Davidia involucrata HOM05D006323 ORTHO05D007827 6.6e-44 181.4 150 58.0
Glyma.17G234600 Glycine max HOM05D006323 ORTHO05D007827 6.6e-44 181.4 163 54.0
Rhsim07G0219300 Rhododendron simsii HOM05D006323 ORTHO05D007827 6.6e-44 181.4 150 56.7
TAR381G0342 Trochodendron aralioides HOM05D006323 ORTHO05D007827 8.7e-44 181.0 150 59.3
TAR381G1608 Trochodendron aralioides HOM05D006323 ORTHO05D007827 8.7e-44 181.0 150 59.3
GSVIVG01009337001 Vitis vinifera HOM05D006323 ORTHO05D007827 1.9e-43 179.9 150 57.3
TAR625G0711 Trochodendron aralioides HOM05D006323 ORTHO05D007827 1.6e-42 176.8 144 59.0
Psat6g018000 Pisum sativum HOM05D006323 ORTHO05D007827 3.6e-42 175.6 164 51.8
Medtr1g017940 Medicago truncatula HOM05D006323 ORTHO05D007827 4.8e-42 175.3 164 52.4
EL10Ac1g02373 Beta vulgaris HOM05D006323 ORTHO05D007827 4.0e-41 172.2 149 56.4
ClCG08G016540 Citrullus lanatus HOM05D006323 ORTHO05D007827 5.3e-41 171.8 150 54.0
HanXRQChr10g0298611 Helianthus annuus HOM05D006323 ORTHO05D007827 5.3e-41 171.8 150 58.7
Hund05295 Selenicereus undatus HOM05D006323 ORTHO05D007827 5.3e-41 171.8 150 57.3
Glyma.14G089027 Glycine max HOM05D006323 ORTHO05D007827 9.0e-41 171.0 163 51.5
Sed0007452 Sechium edule HOM05D006323 ORTHO05D007827 1.2e-40 170.6 150 54.7
MELO3C010800.2 Cucumis melo HOM05D006323 ORTHO05D007827 1.5e-40 170.2 150 52.7
CsaV3_2G026070 Cucumis sativus L. HOM05D006323 ORTHO05D007827 1.5e-40 170.2 150 52.7
PGR083G0013 Punica granatum HOM05D006323 ORTHO05D007827 1.5e-40 170.2 151 56.3
Lj5g0017088 Lotus japonicus HOM05D006323 ORTHO05D007827 2.6e-40 169.5 163 52.8
Sabra02G0092600 Salix brachista HOM05D006323 ORTHO05D007827 5.8e-40 168.3 149 54.4
Phvul.001G028300 Phaseolus vulgaris HOM05D006323 ORTHO05D007827 7.6e-40 167.9 157 50.3
arahy.Tifrunner.gnm1.ann1.JK4I75 Arachis hypogaea HOM05D006323 ORTHO05D007827 9.9e-40 167.5 164 53.0
ECA247G3150 Erigeron canadensis HOM05D006323 ORTHO05D007827 9.9e-40 167.5 150 57.3
Potri.002G117900 Populus trichocarpa HOM05D006323 ORTHO05D007827 9.9e-40 167.5 149 53.7
arahy.Tifrunner.gnm1.ann1.694GR7 Arachis hypogaea HOM05D006323 ORTHO05D007827 1.7e-39 166.8 164 50.0
AUR62037416 Chenopodium quinoa HOM05D006323 ORTHO05D007827 1.7e-39 166.8 181 47.5
PSO541G5960 Papaver somniferum HOM05D006323 ORTHO05D007827 1.7e-39 166.8 149 55.0
PSO675G0675 Papaver somniferum HOM05D006323 ORTHO05D007827 1.7e-39 166.8 149 55.0
CAN.G724.32 Capsicum annuum HOM05D006323 ORTHO05D007827 2.2e-39 166.4 150 54.7
Nitab4.5_0003725g0070 Nicotiana tabacum HOM05D006323 ORTHO05D007827 2.2e-39 166.4 146 54.1
Aqoxy6G02596 Aquilegia oxysepala HOM05D006323 ORTHO05D007827 3.8e-39 165.6 151 54.3
Oeu016579.1 Olea europaea HOM05D006323 ORTHO05D007827 3.8e-39 165.6 149 56.4
Cpa.g.sc142.34 Carica papaya HOM05D006323 ORTHO05D007827 6.4e-39 164.9 150 54.0
AUR62022472 Chenopodium quinoa HOM05D006323 ORTHO05D007827 6.4e-39 164.9 149 53.7
Sopen04g031380 Solanum pennellii HOM05D006323 ORTHO05D007827 8.4e-39 164.5 150 53.3
PGSC0003DMG400010620 Solanum tuberosum HOM05D006323 ORTHO05D007827 1.1e-38 164.1 150 54.0
Migut.N02786 Erythranthe guttata HOM05D006323 ORTHO05D007827 1.4e-38 163.7 150 52.7
Nitab4.5_0000497g0170 Nicotiana tabacum HOM05D006323 ORTHO05D007827 1.4e-38 163.7 147 53.7
TPR.G13155 Trifolium pratense HOM05D006323 ORTHO05D007827 2.4e-38 162.9 164 51.2
SalBow2G0555 Salvia bowleyana HOM05D006323 ORTHO05D007827 5.4e-38 161.8 151 53.6
Cpa.g.sc142.31 Carica papaya HOM05D006323 ORTHO05D007827 7.1e-38 161.4 150 53.3
Cc10_g05020 Coffea canephora HOM05D006323 ORTHO05D007827 1.2e-37 160.6 150 53.3
Lalb_Chr14g0368151 Lupinus albus HOM05D006323 ORTHO05D007827 1.2e-37 160.6 164 51.2
Manes.18G047100 Manihot esculenta HOM05D006323 ORTHO05D007827 2.7e-37 159.5 150 52.7
TWI56G0563 Tripterygium wilfordii HOM05D006323 ORTHO05D007827 3.0e-36 156.0 150 52.0
Thecc.08G088000 Theobroma cacao HOM05D006323 ORTHO05D007827 3.9e-36 155.6 150 52.7
ATR0739G201 Amborella trichopoda HOM05D006323 ORTHO05D007827 6.7e-36 154.8 149 51.7
Sc26g0004210 Simmondsia chinensis HOM05D006323 ORTHO05D007827 8.7e-36 154.5 151 50.3
CANSAT25G0442 Cannabis sativa HOM05D006323 ORTHO05D007827 1.1e-35 154.1 150 50.0
Prupe.1G422100 Prunus persica HOM05D006323 ORTHO05D007827 2.5e-35 152.9 156 51.3
Gohir.D05G213700 Gossypium hirsutum HOM05D006323 ORTHO05D007827 1.4e-33 147.1 150 51.3
Gorai.009G220400 Gossypium raimondii HOM05D006323 ORTHO05D007827 1.4e-33 147.1 150 52.0
HPP92_013407 Vanilla planifolia HOM05D006323 ORTHO05D007827 1.8e-33 146.7 149 47.0
CDE04G3275 Ceratophyllum demersum HOM05D006323 ORTHO05D007827 3.1e-33 146.0 149 46.3
Ciclev10001174m.g Citrus clementina HOM05D006323 ORTHO05D007827 1.2e-32 144.1 153 50.3
SGA_v2.0_scaffold28G11834 Striga asiatica HOM05D006323 ORTHO05D007827 1.2e-32 144.1 152 49.3
Gohir.A05G210400 Gossypium hirsutum HOM05D006323 ORTHO05D007827 1.5e-32 143.7 150 50.7
FAN15G2783 Fragaria x ananassa HOM05D006323 ORTHO05D007827 2.6e-32 142.9 158 46.8
Atru.chr13.839 Acer truncatum HOM05D006323 ORTHO05D007827 3.4e-32 142.5 150 50.0
Lsat_1_v5_gn_1_1301 Lactuca sativa HOM05D006323 ORTHO05D007827 4.5e-32 142.1 149 51.0
Os12g0511000 Oryza sativa ssp. japonica HOM05D006323 ORTHO05D007827 2.2e-31 139.8 149 45.0
FAN20G1244 Fragaria x ananassa HOM05D006323 ORTHO05D007827 3.8e-31 139.0 158 46.8
Duzib093G0619 Durio zibethinus HOM05D006323 ORTHO05D007827 4.9e-31 138.7 148 48.6
FvH4_2g32960 Fragaria vesca HOM05D006323 ORTHO05D007827 4.9e-31 138.7 158 46.2
FAN24G0652 Fragaria x ananassa HOM05D006323 ORTHO05D007827 4.9e-31 138.7 158 46.2
FAN27G3326 Fragaria x ananassa HOM05D006323 ORTHO05D007827 8.4e-31 137.9 158 46.2
RcHm_v2.0_Chr6g0309741 Rosa chinensis HOM05D006323 ORTHO05D007827 3.5e-29 132.5 157 45.9
Ah.05g167080 Amaranthus hybridus HOM05D006323 ORTHO05D007827 3.3e-27 125.9 149 43.0
Sp6g10510 Schrenkiella parvula HOM05D006323 ORTHO05D007827 1.6e-26 123.6 149 43.6
Thhalv10028685m.g Eutrema salsugineum HOM05D006323 ORTHO05D007827 8.2e-26 121.3 141 44.7
CAN.G724.31 Capsicum annuum HOM05D006323 ORTHO05D007827 1.1e-25 120.9 150 42.7
Carub.0003s1171 Capsella rubella HOM05D006323 ORTHO05D007827 1.8e-25 120.2 149 41.6
VMungo0647G1220 Vigna mungo HOM05D006323 ORTHO05D007827 1.2e-24 117.5 163 39.9
AL3G24000 Arabidopsis lyrata HOM05D006323 ORTHO05D007827 3.4e-24 115.9 141 43.3
AT3G12350 Arabidopsis thaliana HOM05D006323 ORTHO05D007827 4.5e-24 115.5 141 44.0
CARHR287100 Cardamine hirsuta HOM05D006323 ORTHO05D007827 1.0e-23 114.4 143 42.0
C03p33680 Brassica napus HOM05D006323 ORTHO05D007827 4.9e-23 112.1 149 40.3
BolC3t15688H Brassica oleracea HOM05D006323 ORTHO05D007827 4.9e-23 112.1 149 40.3
THA.LOC104825780 Tarenaya hassleriana HOM05D006323 ORTHO05D007827 8.4e-23 111.3 149 40.3
BcaC01g04786 Brassica carinata HOM05D006323 ORTHO05D007827 1.4e-22 110.5 149 40.9
BcaC01g04794 Brassica carinata HOM05D006323 ORTHO05D007827 1.4e-22 110.5 149 40.9
A03p27900 Brassica napus HOM05D006323 ORTHO05D007827 1.9e-22 110.2 149 40.3
BraA03t12002Z Brassica rapa HOM05D006323 ORTHO05D007827 4.2e-22 109.0 149 39.6
COL.COLO4_28497 Corchorus olitorius HOM05D006323 ORTHO05D007827 1.2e-21 107.5 129 41.1
BcaB01g02882 Brassica carinata HOM05D006323 ORTHO05D007827 3.5e-21 105.9 149 40.3
MD08G1081200 Malus domestica HOM05D006323 ORTHO05D007827 9.7e-19 97.8 122 47.5
Eucgr.D02664 Eucalyptus grandis HOM05D061342 ORTHO05D194758 3.1e-17 92.8 43 95.3
Eucgr.E03153 Eucalyptus grandis HOM05D061342 ORTHO05D193387 3.1e-17 92.8 43 95.3
SEGI_04434 Sequoiadendron giganteum HOM05D006323 ORTHO05D007827 2.0e-16 90.1 143 36.4
Eucgr.C00901 Eucalyptus grandis HOM05D001256 ORTHO05D001141 4.5e-16 89.0 52 76.9
unitig_8.g4875 Utricularia gibba HOM05D006323 ORTHO05D007827 1.7e-15 87.0 102 44.1
Aa31LG5G21510 Aethionema arabicum HOM05D006323 ORTHO05D007827 6.5e-15 85.1 143 36.4
Mapoly0007s0129 Marchantia polymorpha HOM05D006323 ORTHO05D007827 4.2e-14 82.4 160 33.8
HPP92_013383 Vanilla planifolia HOM05D006323 ORTHO05D007827 6.3e-10 68.6 67 41.8
Pp3c15_12240 Physcomitrium patens HOM05D006323 ORTHO05D007827 2.6e-08 63.2 154 27.3


User provided reference genes

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